Wall clock time and date at job start Tue Mar 31 2020 15:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86793 * 120.00213 * 2 1 4 4 H 1.48495 * 109.47396 * 240.00321 * 3 2 1 5 5 H 1.48499 * 109.47080 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47053 * 119.99834 * 3 2 1 7 7 C 1.37879 * 119.99860 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00240 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00064 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47203 * 180.02562 * 9 7 2 11 11 S 1.81404 * 109.47465 * 179.97438 * 10 9 7 12 12 O 1.42096 * 110.54309 * 64.12174 * 11 10 9 13 13 O 1.42099 * 110.53860 * 287.37461 * 11 10 9 14 14 N 1.65593 * 104.45238 * 175.74974 * 11 10 9 15 15 C 1.46503 * 120.00199 * 64.00227 * 14 11 10 16 16 H 1.08995 * 109.47111 * 333.38028 * 15 14 11 17 17 C 1.52997 * 109.47455 * 213.37069 * 15 14 11 18 18 C 1.50699 * 109.46798 * 64.55622 * 17 15 14 19 19 O 1.20819 * 120.00298 * 6.01118 * 18 17 15 20 20 O 1.34233 * 119.99944 * 186.01295 * 18 17 15 21 21 C 1.50705 * 109.46909 * 93.37157 * 15 14 11 22 22 C 1.38222 * 119.61925 * 245.00386 * 21 15 14 23 23 C 1.38630 * 119.16377 * 179.97438 * 22 21 15 24 24 C 1.38677 * 118.41840 * 359.97438 * 23 22 21 25 25 C 1.38185 * 119.16213 * 0.27448 * 24 23 22 26 26 N 1.31857 * 119.61744 * 64.97782 * 21 15 14 27 27 H 0.96999 * 120.00067 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.47222 * 59.99880 * 9 7 2 29 29 H 1.09002 * 109.47015 * 299.99739 * 9 7 2 30 30 H 1.08999 * 109.47445 * 59.99418 * 10 9 7 31 31 H 1.09001 * 109.47352 * 299.99512 * 10 9 7 32 32 H 0.96998 * 120.00273 * 244.00622 * 14 11 10 33 33 H 1.08998 * 109.47264 * 184.55759 * 17 15 14 34 34 H 1.09004 * 109.47114 * 304.55950 * 17 15 14 35 35 H 0.96704 * 117.00109 * 180.02562 * 20 18 17 36 36 H 1.08003 * 120.42139 * 359.95257 * 22 21 15 37 37 H 1.08001 * 120.79190 * 180.02562 * 23 22 21 38 38 H 1.07996 * 120.41797 * 180.02562 * 24 23 22 39 39 H 1.07992 * 119.61587 * 179.70237 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0015 11 16 1.3382 -5.2331 -0.0021 12 8 0.5864 -5.3744 -1.1996 13 8 0.7442 -5.4664 1.2676 14 7 2.5165 -6.3905 -0.1206 15 6 3.4996 -6.5478 0.9541 16 1 3.6212 -5.5992 1.4770 17 6 4.8418 -6.9779 0.3588 18 6 5.3747 -5.8791 -0.5242 19 8 4.8024 -4.8164 -0.5783 20 8 6.4853 -6.0810 -1.2505 21 6 3.0205 -7.5976 1.9234 22 6 2.7112 -7.2384 3.2218 23 6 2.2709 -8.2117 4.1054 24 6 2.1571 -9.5158 3.6477 25 6 2.4895 -9.8008 2.3370 26 7 2.9008 -8.8482 1.5229 27 1 -0.4850 0.8400 0.0004 28 1 0.6246 -2.5563 -0.8920 29 1 0.6240 -2.5575 0.8880 30 1 2.8712 -3.6048 0.8890 31 1 2.8724 -3.6040 -0.8910 32 1 2.5559 -6.9644 -0.9016 33 1 5.5504 -7.1732 1.1636 34 1 4.7038 -7.8837 -0.2316 35 1 6.7891 -5.3466 -1.8016 36 1 2.8117 -6.2125 3.5441 37 1 2.0216 -7.9601 5.1257 38 1 1.8168 -10.2994 4.3083 39 1 2.4082 -10.8147 1.9742 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116663105.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:06 Heat of formation + Delta-G solvation = -135.101028 kcal Electronic energy + Delta-G solvation = -26320.478510 eV Core-core repulsion = 22355.137559 eV Total energy + Delta-G solvation = -3965.340951 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.71146 -40.04448 -36.81827 -36.41803 -35.72522 -35.32002 -33.78411 -32.51780 -31.36419 -31.04762 -30.32785 -25.54961 -25.44177 -23.67076 -22.37069 -21.56596 -20.92104 -18.96145 -18.29756 -17.66728 -17.25092 -16.55593 -16.45400 -16.27349 -15.95475 -15.65659 -15.53315 -15.12763 -14.69583 -14.47806 -13.89388 -13.72150 -13.43285 -13.23676 -13.04496 -12.98681 -12.43145 -12.01549 -11.97888 -11.63311 -11.57089 -11.50551 -11.41986 -11.35200 -10.98967 -10.88262 -10.63462 -10.37552 -10.23438 -10.00094 -9.94499 -9.61041 -9.40544 -9.17793 -8.93349 -8.42804 -6.05054 -4.09382 0.81978 1.01798 1.18411 2.12752 2.84224 3.14822 3.31563 3.35825 3.38246 3.67996 4.04928 4.26902 4.38090 4.45174 4.59790 4.73518 4.79192 4.87593 4.97051 4.99151 5.06486 5.29455 5.30189 5.38088 5.41477 5.59651 5.73088 5.86680 5.98641 6.06818 6.09693 6.38162 6.54202 6.73573 7.09263 7.40814 7.46545 7.80355 7.83594 7.89734 8.27733 8.94385 9.54422 11.06180 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.013546 B = 0.004007 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.566373 B = 6986.048390 C = 7925.241522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.056 3.944 3 Si 0.899 3.101 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.514 4.514 8 H 0.062 0.938 9 C 0.028 3.972 10 C -0.572 4.572 11 S 2.585 3.415 12 O -0.968 6.968 13 O -0.968 6.968 14 N -1.110 6.110 15 C 0.223 3.777 16 H 0.110 0.890 17 C -0.112 4.112 18 C 0.473 3.527 19 O -0.494 6.494 20 O -0.521 6.521 21 C 0.111 3.889 22 C -0.139 4.139 23 C -0.075 4.075 24 C -0.171 4.171 25 C 0.093 3.907 26 N -0.469 5.469 27 H 0.264 0.736 28 H 0.032 0.968 29 H 0.029 0.971 30 H 0.117 0.883 31 H 0.131 0.869 32 H 0.415 0.585 33 H 0.117 0.883 34 H 0.122 0.878 35 H 0.412 0.588 36 H 0.140 0.860 37 H 0.136 0.864 38 H 0.133 0.867 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.217 -19.632 5.202 23.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.554 4.554 8 H 0.080 0.920 9 C -0.011 4.011 10 C -0.706 4.706 11 S 2.683 3.317 12 O -0.959 6.959 13 O -0.958 6.958 14 N -0.864 5.864 15 C 0.113 3.887 16 H 0.128 0.872 17 C -0.151 4.151 18 C 0.314 3.686 19 O -0.380 6.380 20 O -0.334 6.334 21 C -0.028 4.028 22 C -0.159 4.159 23 C -0.101 4.101 24 C -0.191 4.191 25 C -0.064 4.064 26 N -0.178 5.178 27 H 0.074 0.926 28 H 0.050 0.950 29 H 0.048 0.952 30 H 0.135 0.865 31 H 0.149 0.851 32 H 0.248 0.752 33 H 0.135 0.865 34 H 0.140 0.860 35 H 0.271 0.729 36 H 0.158 0.842 37 H 0.154 0.846 38 H 0.151 0.849 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 11.001 -19.846 4.770 23.187 hybrid contribution 0.933 1.598 0.212 1.863 sum 11.935 -18.247 4.982 22.366 Atomic orbital electron populations 1.69951 1.06092 1.27138 1.49955 1.25065 0.94945 0.99441 0.95108 0.86542 0.79474 0.82643 0.78660 1.20135 1.21165 1.20147 1.20988 0.93109 0.89695 1.51572 0.92001 1.18967 0.92732 0.90841 0.98581 1.30331 1.12904 1.16431 1.10975 1.05843 0.74628 0.76952 0.74240 1.93544 1.68375 1.85982 1.47983 1.93536 1.74567 1.84449 1.43215 1.55853 1.48691 1.53100 1.28802 1.19267 0.86588 0.96392 0.86409 0.87245 1.21581 0.96508 0.97523 0.99523 1.23324 0.77791 0.88806 0.78649 1.90839 1.57300 1.27133 1.62749 1.84489 1.43049 1.48893 1.56945 1.21366 0.96869 0.92050 0.92559 1.22013 0.98764 1.01164 0.93967 1.21593 0.95500 0.92778 1.00210 1.22157 1.01615 0.97593 0.97747 1.22701 0.95079 0.98430 0.90199 1.67349 1.12672 1.00538 1.37270 0.92602 0.94974 0.95224 0.86475 0.85112 0.75191 0.86490 0.86027 0.72882 0.84202 0.84612 0.84893 0.82781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.11 13.29 55.43 0.74 -26.37 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.51 -14.65 9.11 -34.44 -0.31 -14.96 16 8 H 0.06 1.69 7.74 -52.49 -0.41 1.28 16 9 C 0.03 0.74 4.98 -27.89 -0.14 0.60 16 10 C -0.57 -11.81 4.67 37.15 0.17 -11.64 16 11 S 2.58 49.52 5.39 -107.50 -0.58 48.94 16 12 O -0.97 -21.70 18.08 -57.54 -1.04 -22.74 16 13 O -0.97 -20.37 17.70 -57.54 -1.02 -21.39 16 14 N -1.11 -15.68 4.62 -5.88 -0.03 -15.71 16 15 C 0.22 2.63 1.96 -69.08 -0.14 2.49 16 16 H 0.11 1.25 6.63 -51.93 -0.34 0.91 16 17 C -0.11 -0.98 5.22 -27.89 -0.15 -1.12 16 18 C 0.47 4.88 8.14 36.01 0.29 5.17 16 19 O -0.49 -6.88 13.65 -18.74 -0.26 -7.13 16 20 O -0.52 -4.24 13.42 -39.27 -0.53 -4.76 16 21 C 0.11 1.35 5.62 -82.59 -0.46 0.89 16 22 C -0.14 -1.61 9.71 -39.44 -0.38 -1.99 16 23 C -0.07 -0.73 10.18 -39.27 -0.40 -1.13 16 24 C -0.17 -1.50 10.11 -39.44 -0.40 -1.90 16 25 C 0.09 0.90 11.18 -17.55 -0.20 0.71 16 26 N -0.47 -5.49 9.97 -9.47 -0.09 -5.58 16 27 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 28 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.12 2.19 7.50 -51.92 -0.39 1.80 16 31 H 0.13 2.63 6.83 -51.92 -0.35 2.28 16 32 H 0.41 5.14 8.78 -34.47 -0.30 4.84 16 33 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.12 0.96 8.07 -51.93 -0.42 0.54 16 35 H 0.41 2.01 9.10 45.56 0.41 2.42 16 36 H 0.14 1.48 7.95 -52.48 -0.42 1.06 16 37 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 38 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 39 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 352.82 15.07 5.32 5.32 Total: -1.00 -39.04 352.82 -8.61 -47.65 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -3.89 Total: 6.47 kcal Atomic # 6 Polarization: -19.14 SS G_CDS: -2.21 Total: -21.35 kcal Atomic # 7 Polarization: -48.28 SS G_CDS: 0.61 Total: -47.67 kcal Atomic # 8 Polarization: -53.19 SS G_CDS: -2.84 Total: -56.03 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 49.52 SS G_CDS: -0.58 Total: 48.94 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -39.04 -8.61 -47.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116663105.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.456 kcal (2) G-P(sol) polarization free energy of solvation -39.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds