Wall clock time and date at job start Tue Mar 31 2020 15:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00060 * 2 1 4 4 H 1.48492 * 109.47122 * 269.99760 * 3 2 1 5 5 H 1.48503 * 109.46930 * 29.99863 * 3 2 1 6 6 H 1.48507 * 109.47019 * 149.99774 * 3 2 1 7 7 C 1.37883 * 119.99716 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99687 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00395 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.47553 * 174.43292 * 9 7 2 11 11 C 1.46899 * 111.00240 * 162.61593 * 10 9 7 12 12 C 1.50695 * 109.47173 * 195.58604 * 11 10 9 13 13 C 1.38738 * 120.80467 * 258.84591 * 12 11 10 14 14 Cl 1.73602 * 120.42082 * 359.97438 * 13 12 11 15 15 C 1.38333 * 119.15056 * 179.70660 * 13 12 11 16 16 N 1.31848 * 120.77667 * 0.57956 * 15 13 12 17 17 C 1.31863 * 121.75075 * 359.71120 * 16 15 13 18 18 C 1.38336 * 120.77592 * 359.97438 * 17 16 15 19 19 Cl 1.73595 * 120.42897 * 180.02562 * 18 17 16 20 20 C 1.46906 * 110.99788 * 286.57157 * 10 9 7 21 21 C 1.54890 * 110.48283 * 334.03061 * 20 10 9 22 22 C 1.55238 * 102.58436 * 156.67705 * 21 20 10 23 23 C 1.54264 * 104.23506 * 322.08338 * 22 21 20 24 24 C 1.53878 * 106.59758 * 23.61228 * 23 22 21 25 25 H 0.96996 * 120.00152 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47176 * 54.42541 * 9 7 2 27 27 H 1.09010 * 109.46888 * 294.43432 * 9 7 2 28 28 H 1.08998 * 109.47183 * 315.59251 * 11 10 9 29 29 H 1.09006 * 109.46956 * 75.58559 * 11 10 9 30 30 H 1.08010 * 119.61183 * 180.31755 * 15 13 12 31 31 H 1.08002 * 119.61616 * 179.97438 * 17 16 15 32 32 H 1.08991 * 110.43406 * 211.49200 * 20 10 9 33 33 H 1.08994 * 110.75985 * 275.06695 * 21 20 10 34 34 H 1.09004 * 110.75970 * 38.44665 * 21 20 10 35 35 H 1.09003 * 110.47248 * 203.39357 * 22 21 20 36 36 H 1.09003 * 110.58490 * 80.82936 * 22 21 20 37 37 H 1.09003 * 110.03452 * 264.32879 * 23 22 21 38 38 H 1.08997 * 110.07481 * 142.91628 * 23 22 21 39 39 H 1.09001 * 110.03506 * 240.71814 * 24 23 22 40 40 H 1.08995 * 110.03381 * 119.28195 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2000 -3.6125 -0.1332 11 6 1.5813 -4.8828 0.2688 12 6 2.6550 -5.9173 0.4880 13 6 2.9231 -6.8782 -0.4761 14 17 2.0233 -6.9093 -1.9604 15 6 3.9204 -7.8078 -0.2419 16 7 4.6039 -7.7944 0.8855 17 6 4.3728 -6.9000 1.8265 18 6 3.3955 -5.9350 1.6612 19 17 3.0992 -4.7615 2.9056 20 6 2.7269 -3.6936 -1.5021 21 6 1.7211 -3.0795 -2.5073 22 6 2.6311 -2.6969 -3.7053 23 6 3.9302 -2.1876 -3.0474 24 6 3.9911 -2.8214 -1.6466 25 1 -0.4850 0.8400 0.0004 26 1 0.5520 -2.5151 -0.8356 27 1 0.7009 -2.6011 0.9361 28 1 1.0220 -4.7381 1.1931 29 1 0.9048 -5.2218 -0.5158 30 1 4.1389 -8.5561 -0.9895 31 1 4.9532 -6.9211 2.7371 32 1 2.9454 -4.7285 -1.7651 33 1 0.9748 -3.8157 -2.8056 34 1 1.2450 -2.1943 -2.0855 35 1 2.1690 -1.9075 -4.2982 36 1 2.8346 -3.5695 -4.3261 37 1 3.9059 -1.1010 -2.9649 38 1 4.7939 -2.4979 -3.6355 39 1 3.9963 -2.0423 -0.8842 40 1 4.8839 -3.4399 -1.5551 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137608561.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:56 Heat of formation + Delta-G solvation = 35.616650 kcal Electronic energy + Delta-G solvation = -24570.474326 eV Core-core repulsion = 21051.201708 eV Total energy + Delta-G solvation = -3519.272619 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.49719 -38.49488 -36.79525 -36.43207 -34.92024 -33.10841 -31.87613 -30.98134 -28.04309 -27.72813 -27.21078 -24.74281 -23.64203 -22.24866 -21.67148 -19.70080 -18.58362 -17.16397 -17.11348 -16.53740 -16.02942 -15.53139 -15.03219 -14.62225 -14.51478 -14.43114 -13.70828 -13.36554 -13.17828 -12.81088 -12.43378 -12.32827 -12.14230 -11.78026 -11.70810 -11.45275 -11.20909 -10.98260 -10.91765 -10.78351 -10.67883 -10.50207 -10.31733 -10.29837 -10.12741 -9.79830 -9.55504 -9.46683 -9.15674 -8.91482 -8.86547 -8.40177 -7.21649 -6.02481 -4.01866 0.69739 0.92737 1.81922 2.26363 3.30679 3.37950 3.40383 3.42944 4.25180 4.38768 4.47724 4.53495 4.91248 4.93676 5.06196 5.32041 5.35342 5.40948 5.50502 5.60718 5.69069 5.95799 6.01637 6.06158 6.20261 6.22450 6.28201 6.29548 6.42916 6.54290 6.61592 6.69395 6.96387 6.99672 7.10261 7.34270 7.48492 7.57852 7.92393 8.09592 8.16152 8.51128 9.06537 9.61445 11.07743 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.013177 B = 0.005396 C = 0.004432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.412120 B = 5188.253131 C = 6315.520672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.888 3.112 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.273 1.273 7 C -0.494 4.494 8 H 0.071 0.929 9 C 0.184 3.816 10 N -0.515 5.515 11 C 0.078 3.922 12 C -0.003 4.003 13 C -0.081 4.081 14 Cl -0.041 7.041 15 C 0.109 3.891 16 N -0.462 5.462 17 C 0.108 3.892 18 C -0.059 4.059 19 Cl -0.022 7.022 20 C 0.088 3.912 21 C -0.162 4.162 22 C -0.116 4.116 23 C -0.117 4.117 24 C -0.117 4.117 25 H 0.260 0.740 26 H 0.018 0.982 27 H 0.022 0.978 28 H 0.090 0.910 29 H 0.050 0.950 30 H 0.167 0.833 31 H 0.169 0.831 32 H 0.063 0.937 33 H 0.043 0.957 34 H 0.120 0.880 35 H 0.055 0.945 36 H 0.048 0.952 37 H 0.061 0.939 38 H 0.046 0.954 39 H 0.099 0.901 40 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.588 -13.843 -1.141 14.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.144 4.144 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.198 1.198 7 C -0.533 4.533 8 H 0.089 0.911 9 C 0.060 3.940 10 N -0.238 5.238 11 C -0.050 4.050 12 C -0.013 4.013 13 C -0.110 4.110 14 Cl -0.012 7.012 15 C -0.049 4.049 16 N -0.171 5.171 17 C -0.049 4.049 18 C -0.089 4.089 19 Cl 0.007 6.993 20 C -0.021 4.021 21 C -0.200 4.200 22 C -0.154 4.154 23 C -0.155 4.155 24 C -0.155 4.155 25 H 0.069 0.931 26 H 0.036 0.964 27 H 0.040 0.960 28 H 0.109 0.891 29 H 0.068 0.932 30 H 0.184 0.816 31 H 0.186 0.814 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.138 0.862 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.065 0.935 39 H 0.117 0.883 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 6.360 -14.136 -0.686 15.516 hybrid contribution -0.993 1.509 -0.790 1.971 sum 5.367 -12.627 -1.476 13.800 Atomic orbital electron populations 1.69943 1.05919 1.26618 1.51455 1.24932 0.94744 0.98973 0.95777 0.86639 0.79952 0.83700 0.78036 1.20796 1.21450 1.19821 1.21242 0.93632 0.89352 1.49066 0.91083 1.20046 0.90310 0.87122 0.96532 1.62313 1.37951 1.01045 1.22525 1.21166 0.91859 0.89854 1.02105 1.20323 0.96231 0.94255 0.90491 1.21997 0.98840 0.99674 0.90532 1.98384 1.73627 1.97649 1.31530 1.22767 0.90576 0.96521 0.95009 1.67910 1.25245 1.22909 1.01061 1.22869 0.94270 0.89397 0.98398 1.21919 0.99117 0.95029 0.92814 1.98427 1.94913 1.56130 1.49850 1.22469 0.94731 0.97589 0.87297 1.23420 0.97682 1.03193 0.95687 1.22235 0.96338 0.99362 0.97453 1.22017 0.96505 1.00596 0.96353 1.22351 0.95702 0.99953 0.97490 0.93052 0.96448 0.96026 0.89143 0.93237 0.81595 0.81429 0.91935 0.93854 0.86225 0.92627 0.93315 0.92027 0.93506 0.88284 0.94250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.34 13.29 55.43 0.74 -24.60 16 2 C 0.06 1.51 5.46 -17.82 -0.10 1.42 16 3 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.49 -12.67 7.52 -34.44 -0.26 -12.93 16 8 H 0.07 1.83 5.06 -52.49 -0.27 1.57 16 9 C 0.18 4.34 4.27 -4.98 -0.02 4.32 16 10 N -0.52 -10.10 4.32 -227.53 -0.98 -11.09 16 11 C 0.08 1.33 4.35 -4.98 -0.02 1.31 16 12 C 0.00 -0.05 4.94 -104.25 -0.52 -0.56 16 13 C -0.08 -1.08 5.67 -39.36 -0.22 -1.30 16 14 Cl -0.04 -0.52 25.34 -51.86 -1.31 -1.83 16 15 C 0.11 1.30 10.98 -17.51 -0.19 1.11 16 16 N -0.46 -5.87 10.36 -13.19 -0.14 -6.01 16 17 C 0.11 1.34 10.99 -17.50 -0.19 1.15 16 18 C -0.06 -0.83 6.34 -39.36 -0.25 -1.08 16 19 Cl -0.02 -0.33 27.72 -51.86 -1.44 -1.77 16 20 C 0.09 1.62 2.68 -66.05 -0.18 1.44 16 21 C -0.16 -3.07 5.42 -24.55 -0.13 -3.20 16 22 C -0.12 -1.95 6.84 -24.88 -0.17 -2.12 16 23 C -0.12 -2.00 6.80 -25.61 -0.17 -2.17 16 24 C -0.12 -2.18 6.15 -25.61 -0.16 -2.34 16 25 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 26 H 0.02 0.45 5.28 -51.93 -0.27 0.18 16 27 H 0.02 0.56 7.70 -51.92 -0.40 0.16 16 28 H 0.09 1.57 7.08 -51.93 -0.37 1.20 16 29 H 0.05 0.83 6.54 -51.93 -0.34 0.49 16 30 H 0.17 1.52 8.06 -52.48 -0.42 1.10 16 31 H 0.17 1.63 8.06 -52.49 -0.42 1.21 16 32 H 0.06 1.07 4.34 -51.93 -0.23 0.84 16 33 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.12 2.74 4.62 -51.93 -0.24 2.50 16 35 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.10 2.11 4.77 -51.93 -0.25 1.86 16 40 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 338.96 15.07 5.11 5.11 Total: -1.00 -27.15 338.96 -10.51 -37.66 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -4.88 Total: 1.54 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: -2.58 Total: -14.97 kcal Atomic # 7 Polarization: -41.31 SS G_CDS: -0.38 Total: -41.70 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -2.75 Total: -3.60 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -27.15 -10.51 -37.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137608561.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.274 kcal (2) G-P(sol) polarization free energy of solvation -27.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds