Wall clock time and date at job start Tue Mar 31 2020 15:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00060 * 2 1 4 4 H 1.48492 * 109.47122 * 269.99760 * 3 2 1 5 5 H 1.48503 * 109.46930 * 29.99863 * 3 2 1 6 6 H 1.48507 * 109.47019 * 149.99774 * 3 2 1 7 7 C 1.37883 * 119.99716 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99687 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00395 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.47553 * 174.43292 * 9 7 2 11 11 C 1.46899 * 111.00240 * 162.61593 * 10 9 7 12 12 C 1.50695 * 109.47173 * 195.58604 * 11 10 9 13 13 C 1.38738 * 120.80467 * 258.84591 * 12 11 10 14 14 Cl 1.73602 * 120.42082 * 359.97438 * 13 12 11 15 15 C 1.38333 * 119.15056 * 179.70660 * 13 12 11 16 16 N 1.31848 * 120.77667 * 0.57956 * 15 13 12 17 17 C 1.31863 * 121.75075 * 359.71120 * 16 15 13 18 18 C 1.38336 * 120.77592 * 359.97438 * 17 16 15 19 19 Cl 1.73595 * 120.42897 * 180.02562 * 18 17 16 20 20 C 1.46906 * 110.99788 * 286.57157 * 10 9 7 21 21 C 1.54890 * 110.48283 * 334.03061 * 20 10 9 22 22 C 1.55238 * 102.58436 * 156.67705 * 21 20 10 23 23 C 1.54264 * 104.23506 * 322.08338 * 22 21 20 24 24 C 1.53878 * 106.59758 * 23.61228 * 23 22 21 25 25 H 0.96996 * 120.00152 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47176 * 54.42541 * 9 7 2 27 27 H 1.09010 * 109.46888 * 294.43432 * 9 7 2 28 28 H 1.08998 * 109.47183 * 315.59251 * 11 10 9 29 29 H 1.09006 * 109.46956 * 75.58559 * 11 10 9 30 30 H 1.08010 * 119.61183 * 180.31755 * 15 13 12 31 31 H 1.08002 * 119.61616 * 179.97438 * 17 16 15 32 32 H 1.08991 * 110.43406 * 211.49200 * 20 10 9 33 33 H 1.08994 * 110.75985 * 275.06695 * 21 20 10 34 34 H 1.09004 * 110.75970 * 38.44665 * 21 20 10 35 35 H 1.09003 * 110.47248 * 203.39357 * 22 21 20 36 36 H 1.09003 * 110.58490 * 80.82936 * 22 21 20 37 37 H 1.09003 * 110.03452 * 264.32879 * 23 22 21 38 38 H 1.08997 * 110.07481 * 142.91628 * 23 22 21 39 39 H 1.09001 * 110.03506 * 240.71814 * 24 23 22 40 40 H 1.08995 * 110.03381 * 119.28195 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2000 -3.6125 -0.1332 11 6 1.5813 -4.8828 0.2688 12 6 2.6550 -5.9173 0.4880 13 6 2.9231 -6.8782 -0.4761 14 17 2.0233 -6.9093 -1.9604 15 6 3.9204 -7.8078 -0.2419 16 7 4.6039 -7.7944 0.8855 17 6 4.3728 -6.9000 1.8265 18 6 3.3955 -5.9350 1.6612 19 17 3.0992 -4.7615 2.9056 20 6 2.7269 -3.6936 -1.5021 21 6 1.7211 -3.0795 -2.5073 22 6 2.6311 -2.6969 -3.7053 23 6 3.9302 -2.1876 -3.0474 24 6 3.9911 -2.8214 -1.6466 25 1 -0.4850 0.8400 0.0004 26 1 0.5520 -2.5151 -0.8356 27 1 0.7009 -2.6011 0.9361 28 1 1.0220 -4.7381 1.1931 29 1 0.9048 -5.2218 -0.5158 30 1 4.1389 -8.5561 -0.9895 31 1 4.9532 -6.9211 2.7371 32 1 2.9454 -4.7285 -1.7651 33 1 0.9748 -3.8157 -2.8056 34 1 1.2450 -2.1943 -2.0855 35 1 2.1690 -1.9075 -4.2982 36 1 2.8346 -3.5695 -4.3261 37 1 3.9059 -1.1010 -2.9649 38 1 4.7939 -2.4979 -3.6355 39 1 3.9963 -2.0423 -0.8842 40 1 4.8839 -3.4399 -1.5551 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137608561.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:55 Heat of formation + Delta-G solvation = 21.486015 kcal Electronic energy + Delta-G solvation = -24571.087076 eV Core-core repulsion = 21051.201708 eV Total energy + Delta-G solvation = -3519.885369 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.57941 -39.98384 -37.83945 -37.54645 -36.31986 -34.89250 -33.38526 -31.98888 -29.56485 -29.38035 -28.71662 -26.28314 -24.67000 -23.94757 -22.96525 -21.14217 -20.13034 -18.65589 -18.23144 -17.93488 -17.23550 -17.02482 -16.66310 -16.19877 -15.83993 -15.52029 -15.08258 -14.75395 -14.70688 -14.30101 -13.85061 -13.73992 -13.48005 -13.07513 -13.03621 -12.84383 -12.66491 -12.62834 -12.54907 -12.39276 -12.06020 -11.92505 -11.88153 -11.75272 -11.67783 -11.31015 -10.98650 -10.77829 -10.65308 -10.46928 -10.43413 -9.92175 -8.85064 -8.08937 -6.13277 -0.30516 -0.17149 0.77301 1.17967 1.41075 1.43124 1.52069 2.38229 2.46658 3.21442 3.24754 3.34780 3.42061 3.54280 3.83916 3.91475 3.96486 4.05719 4.23487 4.35683 4.49655 4.57800 4.65543 4.73631 4.78966 4.87235 4.89356 4.97345 5.05847 5.20166 5.21445 5.22205 5.30735 5.35318 5.54013 5.57598 5.74791 5.95518 6.22960 6.45725 6.58534 6.69126 7.03155 7.53722 9.01036 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.013177 B = 0.005396 C = 0.004432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.412120 B = 5188.253131 C = 6315.520672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.009 3.991 3 Si 0.944 3.056 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.268 1.268 7 C -0.490 4.490 8 H 0.070 0.930 9 C 0.203 3.797 10 N -0.517 5.517 11 C 0.082 3.918 12 C -0.018 4.018 13 C -0.085 4.085 14 Cl -0.036 7.036 15 C 0.121 3.879 16 N -0.465 5.465 17 C 0.118 3.882 18 C -0.069 4.069 19 Cl -0.037 7.037 20 C 0.091 3.909 21 C -0.160 4.160 22 C -0.110 4.110 23 C -0.114 4.114 24 C -0.117 4.117 25 H 0.258 0.742 26 H 0.000 1.000 27 H -0.008 1.008 28 H 0.079 0.921 29 H 0.051 0.949 30 H 0.198 0.802 31 H 0.194 0.806 32 H 0.082 0.918 33 H 0.048 0.952 34 H 0.077 0.923 35 H 0.055 0.945 36 H 0.075 0.925 37 H 0.045 0.955 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.687 -15.487 -2.193 17.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.189 4.189 3 Si 0.771 3.229 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.193 1.193 7 C -0.529 4.529 8 H 0.088 0.912 9 C 0.077 3.923 10 N -0.240 5.240 11 C -0.046 4.046 12 C -0.028 4.028 13 C -0.114 4.114 14 Cl -0.007 7.007 15 C -0.037 4.037 16 N -0.174 5.174 17 C -0.039 4.039 18 C -0.099 4.099 19 Cl -0.008 7.008 20 C -0.017 4.017 21 C -0.199 4.199 22 C -0.148 4.148 23 C -0.152 4.152 24 C -0.155 4.155 25 H 0.067 0.933 26 H 0.017 0.983 27 H 0.010 0.990 28 H 0.097 0.903 29 H 0.069 0.931 30 H 0.215 0.785 31 H 0.211 0.789 32 H 0.100 0.900 33 H 0.067 0.933 34 H 0.095 0.905 35 H 0.074 0.926 36 H 0.093 0.907 37 H 0.064 0.936 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.477 -15.794 -1.740 18.010 hybrid contribution -1.632 1.901 -0.467 2.549 sum 6.845 -13.893 -2.207 15.645 Atomic orbital electron populations 1.70062 1.07284 1.27110 1.53130 1.25622 0.95359 1.01997 0.95897 0.85753 0.78867 0.80181 0.78109 1.20264 1.21582 1.19268 1.21506 0.93660 0.90263 1.47443 0.91183 1.19657 0.90235 0.88214 0.94169 1.62178 1.36926 1.01278 1.23655 1.21062 0.92756 0.89260 1.01487 1.20145 0.96329 0.94560 0.91757 1.22058 0.99330 0.99672 0.90366 1.98387 1.73633 1.97591 1.31117 1.23260 0.89153 0.96119 0.95159 1.68038 1.25306 1.22751 1.01314 1.23246 0.93359 0.88208 0.99112 1.22023 0.99966 0.95527 0.92404 1.98423 1.95071 1.56864 1.50445 1.22528 0.94400 0.98529 0.86281 1.23260 0.98200 1.01513 0.96887 1.22230 0.95494 1.00425 0.96698 1.22007 0.97810 0.99577 0.95838 1.22304 0.96317 0.99324 0.97563 0.93272 0.98251 0.98991 0.90297 0.93124 0.78487 0.78914 0.90041 0.93321 0.90479 0.92648 0.90685 0.93565 0.90581 0.91312 0.92737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.39 13.29 21.45 0.28 -54.11 16 2 C 0.01 0.47 5.46 84.66 0.46 0.93 16 3 Si 0.94 43.75 29.54 68.60 2.03 45.77 16 4 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 5 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 6 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 7 C -0.49 -25.85 7.52 25.60 0.19 -25.66 16 8 H 0.07 3.68 5.06 -2.91 -0.01 3.67 16 9 C 0.20 9.96 4.27 85.56 0.36 10.32 16 10 N -0.52 -20.57 4.32 -873.78 -3.78 -24.35 16 11 C 0.08 2.83 4.35 85.56 0.37 3.20 16 12 C -0.02 -0.52 4.94 -19.62 -0.10 -0.62 16 13 C -0.08 -2.06 5.67 22.41 0.13 -1.93 16 14 Cl -0.04 -0.84 25.34 -2.72 -0.07 -0.91 16 15 C 0.12 2.47 10.98 84.71 0.93 3.40 16 16 N -0.47 -10.31 10.36 -195.65 -2.03 -12.34 16 17 C 0.12 2.62 10.99 84.71 0.93 3.56 16 18 C -0.07 -1.88 6.34 22.41 0.14 -1.74 16 19 Cl -0.04 -1.10 27.72 -2.72 -0.08 -1.17 16 20 C 0.09 3.28 2.68 45.99 0.12 3.40 16 21 C -0.16 -6.06 5.42 32.01 0.17 -5.88 16 22 C -0.11 -3.52 6.84 31.79 0.22 -3.30 16 23 C -0.11 -3.69 6.80 31.32 0.21 -3.48 16 24 C -0.12 -4.21 6.15 31.32 0.19 -4.02 16 25 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 26 H 0.00 0.00 5.28 -2.39 -0.01 -0.01 16 27 H -0.01 -0.43 7.70 -2.38 -0.02 -0.45 16 28 H 0.08 2.85 7.08 -2.39 -0.02 2.84 16 29 H 0.05 1.71 6.54 -2.38 -0.02 1.69 16 30 H 0.20 2.75 8.06 -2.91 -0.02 2.72 16 31 H 0.19 3.20 8.06 -2.91 -0.02 3.18 16 32 H 0.08 2.63 4.34 -2.39 -0.01 2.62 16 33 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.08 3.64 4.62 -2.38 -0.01 3.63 16 35 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.07 2.92 4.77 -2.39 -0.01 2.91 16 40 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -59.32 338.96 1.78 -57.54 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: 1.08 Total: 11.39 kcal Atomic # 6 Polarization: -26.16 SS G_CDS: 4.35 Total: -21.82 kcal Atomic # 7 Polarization: -85.28 SS G_CDS: -5.52 Total: -90.80 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 17 Polarization: -1.94 SS G_CDS: -0.14 Total: -2.08 kcal Total: -59.32 1.78 -57.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137608561.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.023 kcal (2) G-P(sol) polarization free energy of solvation -59.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds