Wall clock time and date at job start Tue Mar 31 2020 15:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00090 * 2 1 4 4 H 1.48506 * 109.47110 * 269.99618 * 3 2 1 5 5 H 1.48505 * 109.47171 * 29.99654 * 3 2 1 6 6 H 1.48499 * 109.47126 * 149.99621 * 3 2 1 7 7 C 1.37885 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99382 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00086 * 180.02562 * 7 2 1 10 10 N 1.46900 * 109.46795 * 174.39576 * 9 7 2 11 11 C 1.46899 * 110.99803 * 160.83916 * 10 9 7 12 12 C 1.50692 * 109.47259 * 199.52648 * 11 10 9 13 13 C 1.38756 * 120.43189 * 78.44943 * 12 11 10 14 14 Cl 1.73598 * 120.79481 * 0.02562 * 13 12 11 15 15 C 1.38814 * 118.41115 * 180.02562 * 13 12 11 16 16 C 1.38135 * 119.17499 * 359.97438 * 15 13 12 17 17 N 1.31900 * 120.79230 * 0.02562 * 16 15 13 18 18 C 1.32000 * 121.73996 * 359.70614 * 17 16 15 19 19 Cl 1.73602 * 119.62860 * 180.28839 * 18 17 16 20 20 C 1.46895 * 111.00384 * 284.79575 * 10 9 7 21 21 C 1.54972 * 110.92286 * 333.42491 * 20 10 9 22 22 C 1.54263 * 104.16127 * 156.29302 * 21 20 10 23 23 C 1.53875 * 106.64106 * 336.44834 * 22 21 20 24 24 C 1.54270 * 106.59935 * 359.97042 * 23 22 21 25 25 H 0.97000 * 119.99546 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.47175 * 54.39744 * 9 7 2 27 27 H 1.09000 * 109.47070 * 294.39606 * 9 7 2 28 28 H 1.09000 * 109.47431 * 319.53238 * 11 10 9 29 29 H 1.09000 * 109.46815 * 79.52919 * 11 10 9 30 30 H 1.08004 * 120.41814 * 180.02562 * 15 13 12 31 31 H 1.07998 * 119.60251 * 179.97438 * 16 15 13 32 32 H 1.08994 * 110.67444 * 210.11716 * 20 10 9 33 33 H 1.08997 * 110.47236 * 37.63836 * 21 20 10 34 34 H 1.08998 * 110.52547 * 274.97711 * 21 20 10 35 35 H 1.08996 * 110.03441 * 217.13455 * 22 21 20 36 36 H 1.09001 * 110.03137 * 95.75361 * 22 21 20 37 37 H 1.09000 * 110.03592 * 119.25504 * 23 22 21 38 38 H 1.09007 * 110.03403 * 240.64413 * 23 22 21 39 39 H 1.08997 * 110.48362 * 142.28902 * 24 23 22 40 40 H 1.08996 * 110.48844 * 264.80142 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 7 4.0011 -2.5724 0.1369 11 6 5.3981 -2.6807 -0.3042 12 6 5.7183 -4.1212 -0.6096 13 6 5.3056 -4.6951 -1.8037 14 17 4.4140 -3.7714 -2.9722 15 6 5.6229 -6.0254 -2.0415 16 6 6.3342 -6.7287 -1.0889 17 7 6.7106 -6.1511 0.0356 18 6 6.4317 -4.8871 0.2943 19 17 6.9605 -4.1801 1.7890 20 6 3.8459 -3.0529 1.5163 21 6 3.8630 -1.8714 2.5190 22 6 3.1093 -2.4116 3.7518 23 6 2.2041 -3.5506 3.2506 24 6 2.4383 -3.6630 1.7299 25 1 -0.4849 0.8401 -0.0004 26 1 3.8746 -0.5956 0.8367 27 1 3.8753 -0.7698 -0.9347 28 1 5.5439 -2.0782 -1.2008 29 1 6.0575 -2.3216 0.4860 30 1 5.3182 -6.5044 -2.9603 31 1 6.5844 -7.7642 -1.2666 32 1 4.6223 -3.7776 1.7611 33 1 3.3429 -1.0094 2.1014 34 1 4.8875 -1.6089 2.7830 35 1 2.5038 -1.6212 4.1953 36 1 3.8190 -2.7941 4.4854 37 1 2.4751 -4.4860 3.7402 38 1 1.1593 -3.3133 3.4516 39 1 2.4239 -4.7073 1.4179 40 1 1.6863 -3.0926 1.1849 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139479336.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:20 Heat of formation + Delta-G solvation = 41.457947 kcal Electronic energy + Delta-G solvation = -24579.656738 eV Core-core repulsion = 21060.637417 eV Total energy + Delta-G solvation = -3519.019321 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.51329 -38.53591 -36.83828 -36.50778 -34.94920 -32.95870 -32.08007 -31.41991 -28.22255 -27.84787 -27.26414 -24.70406 -23.70844 -21.97538 -21.66113 -19.68085 -18.57480 -17.66270 -17.17939 -16.84491 -15.76986 -15.53913 -15.10134 -14.70866 -14.40030 -14.09484 -13.81562 -13.80162 -13.24121 -12.74754 -12.52155 -12.42087 -12.38104 -12.14430 -11.69273 -11.36471 -11.26071 -11.04942 -10.90689 -10.78136 -10.60915 -10.50233 -10.33217 -10.20306 -9.98283 -9.89348 -9.68086 -9.45890 -9.37886 -8.99051 -8.84629 -8.52065 -7.30756 -6.03159 -3.99108 0.71605 0.88066 1.61944 2.14976 3.26561 3.34025 3.35928 3.39041 4.27115 4.41132 4.54837 4.59094 4.83168 4.89949 5.24292 5.25693 5.28307 5.38594 5.41279 5.57960 5.60688 5.88710 5.93393 5.98180 6.17110 6.20075 6.26581 6.29566 6.39754 6.50118 6.60850 6.63909 6.70849 6.91232 7.00886 7.18698 7.30902 7.50125 7.69445 7.89561 8.04981 8.67266 9.09401 9.58054 11.08863 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.012513 B = 0.005687 C = 0.004635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.127868 B = 4922.260844 C = 6040.011703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.070 3.930 3 Si 0.863 3.137 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.267 1.267 7 C -0.497 4.497 8 H 0.092 0.908 9 C 0.149 3.851 10 N -0.506 5.506 11 C 0.080 3.920 12 C -0.089 4.089 13 C 0.036 3.964 14 Cl -0.017 7.017 15 C -0.166 4.166 16 C 0.120 3.880 17 N -0.478 5.478 18 C 0.184 3.816 19 Cl -0.018 7.018 20 C 0.088 3.912 21 C -0.163 4.163 22 C -0.113 4.113 23 C -0.119 4.119 24 C -0.122 4.122 25 H 0.262 0.738 26 H 0.013 0.987 27 H 0.018 0.982 28 H 0.088 0.912 29 H 0.051 0.949 30 H 0.150 0.850 31 H 0.171 0.829 32 H 0.066 0.934 33 H 0.108 0.892 34 H 0.043 0.957 35 H 0.057 0.943 36 H 0.047 0.953 37 H 0.046 0.954 38 H 0.059 0.941 39 H 0.043 0.957 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.858 -10.444 -0.930 16.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.131 4.131 3 Si 0.690 3.310 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.192 1.192 7 C -0.535 4.535 8 H 0.109 0.891 9 C 0.024 3.976 10 N -0.228 5.228 11 C -0.049 4.049 12 C -0.094 4.094 13 C 0.000 4.000 14 Cl 0.012 6.988 15 C -0.187 4.187 16 C -0.037 4.037 17 N -0.189 5.189 18 C 0.020 3.980 19 Cl 0.011 6.989 20 C -0.021 4.021 21 C -0.201 4.201 22 C -0.151 4.151 23 C -0.157 4.157 24 C -0.159 4.159 25 H 0.072 0.928 26 H 0.030 0.970 27 H 0.036 0.964 28 H 0.106 0.894 29 H 0.069 0.931 30 H 0.168 0.832 31 H 0.188 0.812 32 H 0.084 0.916 33 H 0.126 0.874 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.062 0.938 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 12.841 -10.929 -0.594 16.873 hybrid contribution 0.410 1.970 -0.014 2.012 sum 13.251 -8.959 -0.607 16.007 Atomic orbital electron populations 1.69874 1.05978 1.26605 1.51374 1.24859 0.94623 0.98377 0.95236 0.87061 0.80489 0.84831 0.78579 1.20333 1.21345 1.19166 1.21100 0.88432 0.94599 1.49346 0.89051 1.20567 0.97504 0.83982 0.95594 1.62094 1.13483 1.25871 1.21340 1.21138 0.92956 0.89277 1.01497 1.20525 0.97261 0.99224 0.92389 1.21094 0.94618 0.92612 0.91686 1.98447 1.72271 1.72707 1.55335 1.22188 1.00927 0.93139 1.02426 1.22584 0.93791 0.99969 0.87377 1.67003 1.20914 1.09775 1.21234 1.21412 0.96880 0.90278 0.89462 1.98403 1.88615 1.81294 1.30629 1.22646 0.97533 0.95455 0.86485 1.23178 0.99082 1.01715 0.96124 1.21936 0.97947 0.97943 0.97291 1.22036 0.99490 0.97166 0.96992 1.22699 0.98673 0.99730 0.94824 0.92786 0.96967 0.96382 0.89357 0.93108 0.83187 0.81193 0.91552 0.87444 0.93802 0.92420 0.93429 0.93476 0.92183 0.93831 0.86910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.38 13.96 55.43 0.77 -25.60 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 3 Si 0.86 20.61 27.58 -169.99 -4.69 15.92 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.08 6.38 56.52 0.36 -5.72 16 7 C -0.50 -12.94 8.00 -34.44 -0.28 -13.22 16 8 H 0.09 2.60 5.65 -52.48 -0.30 2.31 16 9 C 0.15 3.32 3.37 -4.98 -0.02 3.30 16 10 N -0.51 -9.80 4.33 -227.09 -0.98 -10.78 16 11 C 0.08 1.33 4.34 -4.98 -0.02 1.31 16 12 C -0.09 -1.35 5.03 -104.41 -0.52 -1.87 16 13 C 0.04 0.49 6.36 -39.18 -0.25 0.24 16 14 Cl -0.02 -0.25 27.76 -51.86 -1.44 -1.69 16 15 C -0.17 -1.81 9.93 -39.41 -0.39 -2.20 16 16 C 0.12 1.28 11.18 -17.56 -0.20 1.08 16 17 N -0.48 -6.50 10.34 -10.38 -0.11 -6.61 16 18 C 0.18 2.69 6.74 -17.46 -0.12 2.57 16 19 Cl -0.02 -0.25 25.21 -51.86 -1.31 -1.56 16 20 C 0.09 1.62 2.72 -65.68 -0.18 1.44 16 21 C -0.16 -3.02 5.45 -25.03 -0.14 -3.16 16 22 C -0.11 -1.91 6.80 -25.61 -0.17 -2.09 16 23 C -0.12 -2.05 6.80 -25.61 -0.17 -2.22 16 24 C -0.12 -2.36 6.32 -25.07 -0.16 -2.52 16 25 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 26 H 0.01 0.29 3.81 -51.93 -0.20 0.09 16 27 H 0.02 0.41 7.32 -51.93 -0.38 0.03 16 28 H 0.09 1.44 6.99 -51.93 -0.36 1.08 16 29 H 0.05 0.81 6.34 -51.93 -0.33 0.48 16 30 H 0.15 1.19 8.06 -52.48 -0.42 0.77 16 31 H 0.17 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.07 1.16 4.53 -51.93 -0.24 0.92 16 33 H 0.11 2.32 4.68 -51.93 -0.24 2.08 16 34 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 1.05 8.14 -51.92 -0.42 0.62 16 39 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.11 2.59 4.49 -51.93 -0.23 2.36 16 LS Contribution 335.40 15.07 5.05 5.05 Total: -1.00 -28.68 335.40 -10.25 -38.93 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -4.84 Total: 1.85 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: -2.71 Total: -15.50 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: -0.32 Total: -43.00 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.69 Total: 15.92 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -2.75 Total: -3.25 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.68 -10.25 -38.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139479336.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.386 kcal (2) G-P(sol) polarization free energy of solvation -28.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds