Wall clock time and date at job start Tue Mar 31 2020 15:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37098 * 120.91694 * 2 1 4 4 C 1.38739 * 119.63567 * 179.97438 * 3 2 1 5 5 C 1.50695 * 119.21166 * 179.97438 * 4 3 2 6 6 F 1.39905 * 109.46959 * 90.00378 * 5 4 3 7 7 F 1.39898 * 109.47147 * 210.00166 * 5 4 3 8 8 F 1.39897 * 109.47526 * 330.00487 * 5 4 3 9 9 N 1.31549 * 121.57308 * 359.62790 * 4 3 2 10 10 C 1.32763 * 121.46538 * 0.59749 * 9 4 3 11 11 N 1.36833 * 133.51640 * 179.31859 * 10 9 4 12 12 H 0.96996 * 125.32208 * 359.97200 * 11 10 9 13 13 N 1.39820 * 109.34856 * 179.97438 * 11 10 9 14 14 C 1.30645 * 110.05244 * 0.02562 * 13 11 10 15 15 N 1.39909 * 126.24424 * 179.97438 * 14 13 11 16 16 C 1.34777 * 119.99477 * 0.02562 * 15 14 13 17 17 O 1.21293 * 120.00456 * 0.02562 * 16 15 14 18 18 C 1.50700 * 119.99675 * 179.72987 * 16 15 14 19 19 C 1.50703 * 109.47148 * 180.28037 * 18 16 15 20 20 H 1.08001 * 120.00037 * 359.97438 * 19 18 16 21 21 C 1.37879 * 119.99824 * 179.97438 * 19 18 16 22 22 N 1.31510 * 120.00072 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99575 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47237 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.46786 * 120.00449 * 23 21 19 26 26 H 1.48497 * 109.46988 * 240.00137 * 23 21 19 27 27 C 1.39810 * 120.91189 * 179.97438 * 2 1 3 28 28 H 1.08994 * 109.47231 * 270.02591 * 1 2 3 29 29 H 1.08999 * 109.46746 * 30.02237 * 1 2 3 30 30 H 1.08999 * 109.46830 * 150.01842 * 1 2 3 31 31 H 1.08002 * 120.18734 * 0.02562 * 3 2 1 32 32 H 0.97001 * 120.00038 * 180.02562 * 15 14 13 33 33 H 1.09009 * 109.47352 * 300.27556 * 18 16 15 34 34 H 1.08998 * 109.47585 * 60.27844 * 18 16 15 35 35 H 0.97006 * 119.99375 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2115 1.1762 0.0000 4 6 3.5985 1.1452 0.0005 5 6 4.3632 2.4437 -0.0001 6 9 4.5994 2.8464 1.3188 7 9 5.5843 2.2655 -0.6590 8 9 3.6158 3.4248 -0.6604 9 7 4.2621 0.0093 0.0083 10 6 3.6339 -1.1603 0.0042 11 7 4.0622 -2.4598 -0.0017 12 1 4.9894 -2.7447 -0.0044 13 7 2.9543 -3.3128 -0.0033 14 6 1.8507 -2.6136 0.0008 15 7 0.5481 -3.1241 0.0002 16 6 0.3467 -4.4567 -0.0044 17 8 1.2946 -5.2134 -0.0076 18 6 -1.0564 -5.0067 0.0011 19 6 -1.0056 -6.5129 0.0013 20 1 -0.0526 -7.0210 -0.0027 21 6 -2.1758 -7.2421 0.0065 22 7 -3.3362 -6.6233 0.0108 23 14 -2.1127 -9.1091 0.0059 24 1 -0.6968 -9.5566 0.0000 25 1 -2.7902 -9.6275 1.2214 26 1 -2.8011 -9.6272 -1.2036 27 6 2.2253 -1.1995 0.0005 28 1 -0.3633 0.0005 1.0276 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 1.6896 2.1217 0.0004 32 1 -0.2100 -2.5190 0.0032 33 1 -1.5788 -4.6608 0.8931 34 1 -1.5857 -4.6611 -0.8868 35 1 -4.1594 -7.1364 0.0148 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143189410.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:21 Heat of formation + Delta-G solvation = -82.577339 kcal Electronic energy + Delta-G solvation = -26961.566056 eV Core-core repulsion = 22353.494762 eV Total energy + Delta-G solvation = -4608.071293 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.089 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.47155 -48.01398 -47.90476 -42.01470 -39.35529 -38.30054 -35.36237 -33.82436 -33.09312 -31.46740 -30.42899 -28.89177 -28.11697 -26.89371 -24.26971 -23.18557 -22.64780 -21.40346 -19.99464 -19.04952 -18.84102 -18.48543 -17.82542 -17.32139 -16.68301 -16.25690 -15.91485 -15.77161 -15.41223 -14.87390 -14.71230 -14.52720 -14.51509 -14.36722 -14.11276 -14.06644 -13.80652 -13.73106 -13.47645 -13.09009 -12.94701 -12.84845 -12.30042 -12.18064 -11.62794 -11.07697 -11.01282 -10.87078 -10.74070 -10.18657 -10.08326 -9.93522 -9.41644 -9.25652 -9.01266 -8.56072 -8.16473 -6.18792 -4.19265 0.12182 0.79613 1.83397 2.20374 2.32058 2.96158 3.03987 3.27106 3.29042 3.34945 3.44070 3.54335 3.61893 3.90657 4.05427 4.21196 4.35813 4.42076 4.45248 4.76102 4.92902 5.04872 5.19181 5.20399 5.29634 5.51276 5.73952 5.83143 6.06594 6.60226 6.77680 6.91256 7.02578 7.09391 7.43412 7.75643 7.85455 8.13907 8.79616 8.91916 9.46749 10.93337 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.032406 B = 0.002500 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.819083 B =11197.211401 C =11875.917259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.053 3.947 3 C -0.187 4.187 4 C 0.112 3.888 5 C 0.526 3.474 6 F -0.169 7.169 7 F -0.164 7.164 8 F -0.168 7.168 9 N -0.470 5.470 10 C 0.335 3.665 11 N -0.484 5.484 12 H 0.448 0.552 13 N -0.215 5.215 14 C 0.341 3.659 15 N -0.647 5.647 16 C 0.504 3.496 17 O -0.485 6.485 18 C 0.012 3.988 19 C -0.513 4.513 20 H 0.077 0.923 21 C 0.057 3.943 22 N -0.898 5.898 23 Si 0.903 3.097 24 H -0.270 1.270 25 H -0.283 1.283 26 H -0.283 1.283 27 C -0.206 4.206 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.155 0.845 32 H 0.417 0.583 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.194 21.427 0.019 23.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.042 3.958 3 C -0.211 4.211 4 C -0.038 4.038 5 C 0.471 3.529 6 F -0.150 7.150 7 F -0.145 7.145 8 F -0.149 7.149 9 N -0.185 5.185 10 C 0.092 3.908 11 N -0.202 5.202 12 H 0.295 0.705 13 N -0.039 5.039 14 C 0.072 3.928 15 N -0.303 5.303 16 C 0.294 3.706 17 O -0.353 6.353 18 C -0.028 4.028 19 C -0.551 4.551 20 H 0.096 0.904 21 C -0.144 4.144 22 N -0.538 5.538 23 Si 0.730 3.270 24 H -0.194 1.194 25 H -0.209 1.209 26 H -0.209 1.209 27 C -0.219 4.219 28 H 0.113 0.887 29 H 0.107 0.893 30 H 0.096 0.904 31 H 0.172 0.828 32 H 0.256 0.744 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 11.057 19.457 0.018 22.379 hybrid contribution -0.871 0.232 0.006 0.901 sum 10.186 19.689 0.024 22.168 Atomic orbital electron populations 1.21061 0.88805 1.04415 1.04300 1.19486 0.97003 0.89772 0.89507 1.21055 0.92590 0.99836 1.07608 1.20660 0.91436 0.91031 1.00685 1.17794 0.77525 0.83330 0.74291 1.93251 1.94551 1.91522 1.35680 1.93243 1.45112 1.95312 1.80816 1.93219 1.76436 1.64252 1.81008 1.66073 1.39970 0.95443 1.17028 1.18663 0.88959 0.86843 0.96344 1.46000 1.08958 0.98965 1.66291 0.70525 1.77644 0.91097 1.11431 1.23776 1.20396 0.87849 0.87493 0.97053 1.44230 1.02363 1.09699 1.73987 1.22706 0.95297 0.79024 0.73595 1.90671 1.44323 1.56136 1.44130 1.19306 0.85210 0.98139 1.00108 1.21160 0.93818 0.89295 1.50871 0.90446 1.24987 0.95172 0.99350 0.94880 1.69949 0.97339 1.35813 1.50663 0.86343 0.78427 0.84648 0.77570 1.19404 1.20906 1.20901 1.20156 0.94228 0.92984 1.14539 0.88730 0.89328 0.90436 0.82781 0.74352 0.92714 0.92736 0.92752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.87 9.66 36.01 0.35 -0.52 16 2 C 0.05 0.52 5.91 -104.44 -0.62 -0.09 16 3 C -0.19 -1.70 9.05 -39.81 -0.36 -2.06 16 4 C 0.11 1.23 6.29 -82.53 -0.52 0.72 16 5 C 0.53 5.20 3.42 36.00 0.12 5.32 16 6 F -0.17 -1.69 17.30 2.25 0.04 -1.66 16 7 F -0.16 -1.80 17.02 2.25 0.04 -1.76 16 8 F -0.17 -1.45 16.40 2.25 0.04 -1.41 16 9 N -0.47 -6.10 9.98 -8.58 -0.09 -6.19 16 10 C 0.34 4.63 8.48 -156.11 -1.32 3.31 16 11 N -0.48 -6.84 7.34 31.13 0.23 -6.61 16 12 H 0.45 4.99 8.96 -182.81 -1.64 3.35 16 13 N -0.21 -3.83 10.79 32.59 0.35 -3.47 16 14 C 0.34 5.51 7.97 -152.70 -1.22 4.30 16 15 N -0.65 -10.39 5.41 -9.75 -0.05 -10.44 16 16 C 0.50 10.67 7.79 -10.98 -0.09 10.58 16 17 O -0.49 -12.07 14.20 5.55 0.08 -11.99 16 18 C 0.01 0.27 5.46 -29.03 -0.16 0.11 16 19 C -0.51 -14.06 8.92 -34.44 -0.31 -14.36 16 20 H 0.08 2.24 6.75 -52.49 -0.35 1.88 16 21 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 22 N -0.90 -24.92 13.29 55.43 0.74 -24.19 16 23 Si 0.90 21.32 29.54 -169.99 -5.02 16.29 16 24 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 C -0.21 -2.75 6.17 -105.06 -0.65 -3.40 16 28 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.09 0.40 8.10 -51.93 -0.42 -0.02 16 30 H 0.08 0.55 5.74 -51.93 -0.30 0.25 16 31 H 0.15 0.92 7.57 -52.49 -0.40 0.52 16 32 H 0.42 5.05 6.04 -40.82 -0.25 4.81 16 33 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 34 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 323.08 15.07 4.87 4.87 Total: -1.00 -33.03 323.08 -7.40 -40.44 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -3.76 Total: 0.75 kcal Atomic # 6 Polarization: 10.24 SS G_CDS: -4.86 Total: 5.37 kcal Atomic # 7 Polarization: -52.08 SS G_CDS: 1.18 Total: -50.90 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.08 Total: -11.99 kcal Atomic # 9 Polarization: -4.95 SS G_CDS: 0.11 Total: -4.83 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.03 -7.40 -40.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189410.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.140 kcal (2) G-P(sol) polarization free energy of solvation -33.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds