Wall clock time and date at job start Tue Mar 31 2020 15:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37098 * 120.91694 * 2 1 4 4 C 1.38739 * 119.63567 * 179.97438 * 3 2 1 5 5 C 1.50695 * 119.21166 * 179.97438 * 4 3 2 6 6 F 1.39905 * 109.46959 * 90.00378 * 5 4 3 7 7 F 1.39898 * 109.47147 * 210.00166 * 5 4 3 8 8 F 1.39897 * 109.47526 * 330.00487 * 5 4 3 9 9 N 1.31549 * 121.57308 * 359.62790 * 4 3 2 10 10 C 1.32763 * 121.46538 * 0.59749 * 9 4 3 11 11 N 1.36833 * 133.51640 * 179.31859 * 10 9 4 12 12 H 0.96996 * 125.32208 * 359.97200 * 11 10 9 13 13 N 1.39820 * 109.34856 * 179.97438 * 11 10 9 14 14 C 1.30645 * 110.05244 * 0.02562 * 13 11 10 15 15 N 1.39909 * 126.24424 * 179.97438 * 14 13 11 16 16 C 1.34777 * 119.99477 * 0.02562 * 15 14 13 17 17 O 1.21293 * 120.00456 * 0.02562 * 16 15 14 18 18 C 1.50700 * 119.99675 * 179.72987 * 16 15 14 19 19 C 1.50703 * 109.47148 * 180.28037 * 18 16 15 20 20 H 1.08001 * 120.00037 * 359.97438 * 19 18 16 21 21 C 1.37879 * 119.99824 * 179.97438 * 19 18 16 22 22 N 1.31510 * 120.00072 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99575 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47237 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.46786 * 120.00449 * 23 21 19 26 26 H 1.48497 * 109.46988 * 240.00137 * 23 21 19 27 27 C 1.39810 * 120.91189 * 179.97438 * 2 1 3 28 28 H 1.08994 * 109.47231 * 270.02591 * 1 2 3 29 29 H 1.08999 * 109.46746 * 30.02237 * 1 2 3 30 30 H 1.08999 * 109.46830 * 150.01842 * 1 2 3 31 31 H 1.08002 * 120.18734 * 0.02562 * 3 2 1 32 32 H 0.97001 * 120.00038 * 180.02562 * 15 14 13 33 33 H 1.09009 * 109.47352 * 300.27556 * 18 16 15 34 34 H 1.08998 * 109.47585 * 60.27844 * 18 16 15 35 35 H 0.97006 * 119.99375 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2115 1.1762 0.0000 4 6 3.5985 1.1452 0.0005 5 6 4.3632 2.4437 -0.0001 6 9 4.5994 2.8464 1.3188 7 9 5.5843 2.2655 -0.6590 8 9 3.6158 3.4248 -0.6604 9 7 4.2621 0.0093 0.0083 10 6 3.6339 -1.1603 0.0042 11 7 4.0622 -2.4598 -0.0017 12 1 4.9894 -2.7447 -0.0044 13 7 2.9543 -3.3128 -0.0033 14 6 1.8507 -2.6136 0.0008 15 7 0.5481 -3.1241 0.0002 16 6 0.3467 -4.4567 -0.0044 17 8 1.2946 -5.2134 -0.0076 18 6 -1.0564 -5.0067 0.0011 19 6 -1.0056 -6.5129 0.0013 20 1 -0.0526 -7.0210 -0.0027 21 6 -2.1758 -7.2421 0.0065 22 7 -3.3362 -6.6233 0.0108 23 14 -2.1127 -9.1091 0.0059 24 1 -0.6968 -9.5566 0.0000 25 1 -2.7902 -9.6275 1.2214 26 1 -2.8011 -9.6272 -1.2036 27 6 2.2253 -1.1995 0.0005 28 1 -0.3633 0.0005 1.0276 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 1.6896 2.1217 0.0004 32 1 -0.2100 -2.5190 0.0032 33 1 -1.5788 -4.6608 0.8931 34 1 -1.5857 -4.6611 -0.8868 35 1 -4.1594 -7.1364 0.0148 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143189410.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:20 Heat of formation + Delta-G solvation = -103.718823 kcal Electronic energy + Delta-G solvation = -26962.482819 eV Core-core repulsion = 22353.494762 eV Total energy + Delta-G solvation = -4608.988057 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.089 amu Computer time = 3.01 seconds Orbital eigenvalues (eV) -51.25429 -48.76504 -48.72198 -43.05376 -40.80266 -39.45541 -36.53707 -35.13090 -34.95588 -32.49037 -31.72597 -30.56664 -28.90180 -27.76323 -26.11824 -24.14872 -23.66210 -22.71779 -21.36203 -19.92152 -19.62665 -19.39099 -18.74102 -18.55980 -18.47471 -17.59241 -17.16348 -17.03901 -16.58844 -16.36079 -16.08507 -15.61528 -15.49130 -15.14433 -14.97574 -14.87468 -14.85768 -14.56020 -14.44247 -14.25400 -14.16201 -13.99652 -13.57293 -13.30276 -12.87474 -12.82626 -12.64720 -12.27690 -12.20461 -12.07286 -11.45516 -11.13994 -10.94171 -10.68807 -10.61955 -10.32755 -9.31376 -8.26346 -6.32423 -0.80381 -0.07577 0.87420 0.94024 1.32841 1.40192 1.42828 1.56040 1.82290 1.88342 2.20657 2.41317 2.45385 2.78591 2.93632 3.10279 3.26175 3.30887 3.42368 3.65618 3.85591 4.01758 4.28963 4.38975 4.46385 4.75830 4.93853 5.01953 5.04368 5.23380 5.31316 5.36577 5.71255 5.77924 5.82881 6.06716 6.41173 6.61956 6.79767 7.19235 7.37761 8.85459 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.032406 B = 0.002500 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.819083 B =11197.211401 C =11875.917259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.061 3.939 3 C -0.173 4.173 4 C 0.107 3.893 5 C 0.533 3.467 6 F -0.169 7.169 7 F -0.172 7.172 8 F -0.156 7.156 9 N -0.489 5.489 10 C 0.324 3.676 11 N -0.481 5.481 12 H 0.456 0.544 13 N -0.260 5.260 14 C 0.330 3.670 15 N -0.627 5.627 16 C 0.512 3.488 17 O -0.530 6.530 18 C 0.016 3.984 19 C -0.539 4.539 20 H 0.053 0.947 21 C 0.017 3.983 22 N -0.918 5.918 23 Si 0.958 3.042 24 H -0.279 1.279 25 H -0.273 1.273 26 H -0.273 1.273 27 C -0.217 4.217 28 H 0.112 0.888 29 H 0.120 0.880 30 H 0.071 0.929 31 H 0.194 0.806 32 H 0.436 0.564 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.133 23.691 0.035 25.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.051 3.949 3 C -0.196 4.196 4 C -0.043 4.043 5 C 0.477 3.523 6 F -0.150 7.150 7 F -0.153 7.153 8 F -0.137 7.137 9 N -0.205 5.205 10 C 0.081 3.919 11 N -0.202 5.202 12 H 0.304 0.696 13 N -0.084 5.084 14 C 0.061 3.939 15 N -0.283 5.283 16 C 0.302 3.698 17 O -0.401 6.401 18 C -0.023 4.023 19 C -0.577 4.577 20 H 0.072 0.928 21 C -0.182 4.182 22 N -0.558 5.558 23 Si 0.784 3.216 24 H -0.204 1.204 25 H -0.198 1.198 26 H -0.198 1.198 27 C -0.229 4.229 28 H 0.130 0.870 29 H 0.138 0.862 30 H 0.090 0.910 31 H 0.211 0.789 32 H 0.279 0.721 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.982 21.798 0.033 23.974 hybrid contribution -0.498 -0.283 0.001 0.572 sum 9.484 21.515 0.034 23.512 Atomic orbital electron populations 1.21251 0.86160 1.05697 1.05754 1.19915 0.98783 0.88552 0.87645 1.21485 0.91694 1.01097 1.05281 1.21069 0.92633 0.90763 0.99847 1.17634 0.77203 0.83143 0.74271 1.93256 1.94540 1.91470 1.35728 1.93231 1.45714 1.95377 1.80998 1.93245 1.76055 1.63667 1.80763 1.66067 1.40594 0.95636 1.18199 1.18774 0.89362 0.86848 0.96875 1.45838 1.08617 0.99104 1.66593 0.69604 1.77493 0.92565 1.13750 1.24630 1.20440 0.87062 0.88899 0.97473 1.43625 1.03536 1.08278 1.72874 1.22186 0.93932 0.80457 0.73250 1.90654 1.45159 1.57867 1.46413 1.19125 0.86687 0.96223 1.00275 1.21349 0.93051 0.91738 1.51569 0.92847 1.25645 0.94882 1.03225 0.94466 1.69994 0.97708 1.37202 1.50863 0.85492 0.77868 0.80063 0.78203 1.20371 1.19823 1.19821 1.20230 0.94248 0.92567 1.15863 0.86969 0.86174 0.90984 0.78864 0.72067 0.92335 0.92373 0.92260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.25 9.66 71.24 0.69 -0.56 16 2 C 0.06 1.03 5.91 -19.75 -0.12 0.92 16 3 C -0.17 -2.48 9.05 22.12 0.20 -2.28 16 4 C 0.11 2.09 6.29 42.72 0.27 2.36 16 5 C 0.53 9.27 3.42 71.23 0.24 9.52 16 6 F -0.17 -3.01 17.30 44.97 0.78 -2.24 16 7 F -0.17 -3.54 17.02 44.97 0.77 -2.77 16 8 F -0.16 -2.19 16.40 44.97 0.74 -1.45 16 9 N -0.49 -12.21 9.98 -181.06 -1.81 -14.01 16 10 C 0.32 8.84 8.48 134.12 1.14 9.97 16 11 N -0.48 -13.97 7.34 -55.43 -0.41 -14.38 16 12 H 0.46 10.70 8.96 -213.50 -1.91 8.79 16 13 N -0.26 -9.54 10.79 -50.82 -0.55 -10.09 16 14 C 0.33 10.68 7.97 135.14 1.08 11.76 16 15 N -0.63 -19.97 5.41 -303.14 -1.64 -21.60 16 16 C 0.51 22.10 7.79 87.66 0.68 22.78 16 17 O -0.53 -27.36 14.20 -3.07 -0.04 -27.40 16 18 C 0.02 0.76 5.46 29.10 0.16 0.92 16 19 C -0.54 -30.11 8.92 25.60 0.23 -29.88 16 20 H 0.05 3.20 6.75 -2.91 -0.02 3.18 16 21 C 0.02 0.94 5.46 84.66 0.46 1.41 16 22 N -0.92 -50.54 13.29 21.45 0.28 -50.25 16 23 Si 0.96 43.82 29.54 68.60 2.03 45.85 16 24 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 25 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 26 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 27 C -0.22 -5.53 6.17 -20.15 -0.12 -5.66 16 28 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.12 0.44 8.10 -2.39 -0.02 0.42 16 30 H 0.07 0.80 5.74 -2.39 -0.01 0.78 16 31 H 0.19 1.23 7.57 -2.91 -0.02 1.21 16 32 H 0.44 10.01 6.04 -92.71 -0.56 9.45 16 33 H 0.06 2.68 8.14 -2.38 -0.02 2.66 16 34 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 35 H 0.27 13.87 8.31 -92.70 -0.77 13.10 16 Total: -1.00 -72.76 323.08 3.80 -68.96 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -1.26 Total: 8.12 kcal Atomic # 6 Polarization: 16.36 SS G_CDS: 4.91 Total: 21.26 kcal Atomic # 7 Polarization: -106.22 SS G_CDS: -4.12 Total: -110.34 kcal Atomic # 8 Polarization: -27.36 SS G_CDS: -0.04 Total: -27.40 kcal Atomic # 9 Polarization: -8.74 SS G_CDS: 2.28 Total: -6.46 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -72.76 3.80 -68.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189410.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.756 kcal (2) G-P(sol) polarization free energy of solvation -72.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.01 seconds