Wall clock time and date at job start Tue Mar 31 2020 14:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00108 * 2 1 4 4 H 1.48500 * 109.46896 * 270.00134 * 3 2 1 5 5 H 1.48501 * 109.47074 * 29.99824 * 3 2 1 6 6 H 1.48494 * 109.47348 * 149.99959 * 3 2 1 7 7 C 1.37874 * 119.99749 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00563 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99827 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47439 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47509 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.47081 * 179.97438 * 11 10 9 13 13 O 1.21286 * 120.00444 * 0.02562 * 12 11 10 14 14 N 1.34781 * 119.99540 * 179.97438 * 12 11 10 15 15 C 1.40111 * 119.99559 * 185.27261 * 14 12 11 16 16 C 1.38874 * 120.01565 * 33.30573 * 15 14 12 17 17 C 1.38066 * 119.98583 * 179.97438 * 16 15 14 18 18 C 1.38747 * 120.01208 * 0.02562 * 17 16 15 19 19 O 1.35969 * 119.98471 * 179.97438 * 18 17 16 20 20 C 1.38695 * 120.03171 * 359.97438 * 18 17 16 21 21 S 1.76202 * 119.99296 * 179.97438 * 20 18 17 22 22 N 1.65596 * 107.21835 * 295.00457 * 21 20 18 23 23 O 1.42111 * 106.40278 * 48.54371 * 21 20 18 24 24 O 1.42096 * 106.40217 * 181.45900 * 21 20 18 25 25 C 1.38109 * 120.01807 * 0.25770 * 20 18 17 26 26 H 0.96997 * 120.00265 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47135 * 60.00393 * 9 7 2 28 28 H 1.09006 * 109.47149 * 300.00331 * 9 7 2 29 29 H 1.09002 * 109.47112 * 59.99797 * 10 9 7 30 30 H 1.09003 * 109.47170 * 300.00261 * 10 9 7 31 31 H 1.09002 * 109.47293 * 59.99671 * 11 10 9 32 32 H 1.09006 * 109.46920 * 299.99652 * 11 10 9 33 33 H 0.96994 * 120.00278 * 5.27470 * 14 12 11 34 34 H 1.07997 * 120.00406 * 359.95305 * 16 15 14 35 35 H 1.07991 * 119.99434 * 179.97438 * 17 16 15 36 36 H 0.96705 * 113.99985 * 270.02205 * 19 18 17 37 37 H 0.97003 * 119.99893 * 180.02562 * 22 21 20 38 38 H 0.97000 * 120.00123 * 359.97438 * 22 21 20 39 39 H 1.07992 * 120.01279 * 179.74403 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0044 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6365 0.0001 11 6 5.5515 -2.6366 0.0001 12 6 6.0538 -4.0574 0.0009 13 8 5.2657 -4.9793 0.0009 14 7 7.3789 -4.3036 0.0005 15 6 7.8468 -5.6197 -0.1103 16 6 7.1425 -6.5459 -0.8683 17 6 7.6044 -7.8424 -0.9775 18 6 8.7717 -8.2201 -0.3297 19 8 9.2258 -9.4972 -0.4372 20 6 9.4756 -7.2956 0.4276 21 16 10.9576 -7.7765 1.2505 22 7 10.5407 -8.8980 2.3954 23 8 11.7474 -8.4608 0.2875 24 8 11.4136 -6.6315 1.9576 25 6 9.0122 -5.9996 0.5416 26 1 -0.4850 0.8400 0.0004 27 1 3.8752 -0.6797 0.8895 28 1 3.8745 -0.6808 -0.8905 29 1 3.6578 -3.1506 -0.8896 30 1 3.6585 -3.1502 0.8903 31 1 5.9149 -2.1226 0.8901 32 1 5.9149 -2.1228 -0.8900 33 1 8.0086 -3.5699 0.0770 34 1 6.2335 -6.2521 -1.3720 35 1 7.0566 -8.5628 -1.5667 36 1 8.8876 -10.0936 0.2448 37 1 11.2238 -9.2899 2.9617 38 1 9.6134 -9.1624 2.5002 39 1 9.5581 -5.2809 1.1346 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153032466.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:23 Heat of formation + Delta-G solvation = -131.828161 kcal Electronic energy + Delta-G solvation = -24791.668128 eV Core-core repulsion = 20826.469100 eV Total energy + Delta-G solvation = -3965.199029 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.97570 -39.62127 -37.71798 -37.10536 -36.15914 -34.62938 -34.44261 -33.66187 -32.20450 -31.84059 -29.71375 -28.08597 -24.44601 -24.03174 -22.79283 -21.01118 -20.04889 -19.88164 -19.27937 -18.66667 -17.88416 -17.50654 -16.99887 -16.67149 -16.34904 -16.06248 -15.83471 -15.62301 -15.16507 -14.54986 -14.36251 -13.98540 -13.75861 -13.42896 -13.12222 -12.72763 -12.67475 -12.54673 -12.38385 -12.26509 -12.14084 -12.05123 -11.78861 -11.11336 -11.05028 -10.96700 -10.86372 -10.70303 -10.21858 -9.98766 -9.84231 -9.77224 -9.59705 -9.21695 -8.56846 -8.51615 -6.06380 -4.04846 -0.03920 0.26834 0.65027 2.35496 2.68056 2.73327 3.01406 3.25444 3.27261 3.34940 3.36810 3.46583 4.10149 4.39660 4.41768 4.60449 4.73377 4.90198 5.02726 5.18029 5.25533 5.26603 5.36956 5.40288 5.48614 5.64149 5.73733 5.86569 5.95495 6.36987 6.42351 6.50121 6.55254 6.80821 6.94993 7.09031 7.26849 7.35650 7.75722 7.95831 8.52176 8.99620 9.55303 11.07189 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.030088 B = 0.002112 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.388270 B =13254.793038 C =13796.882420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.065 3.935 3 Si 0.882 3.118 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.521 4.521 8 H 0.072 0.928 9 C -0.014 4.014 10 C -0.088 4.088 11 C -0.141 4.141 12 C 0.514 3.486 13 O -0.514 6.514 14 N -0.682 5.682 15 C 0.133 3.867 16 C -0.049 4.049 17 C -0.140 4.140 18 C 0.180 3.820 19 O -0.485 6.485 20 C -0.683 4.683 21 S 2.708 3.292 22 N -1.250 6.250 23 O -0.947 6.947 24 O -0.965 6.965 25 C -0.037 4.037 26 H 0.263 0.737 27 H 0.016 0.984 28 H 0.012 0.988 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.415 0.585 34 H 0.152 0.848 35 H 0.144 0.856 36 H 0.395 0.605 37 H 0.421 0.579 38 H 0.414 0.586 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.330 -18.311 3.193 29.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.136 4.136 3 Si 0.709 3.291 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.559 4.559 8 H 0.091 0.909 9 C -0.052 4.052 10 C -0.126 4.126 11 C -0.181 4.181 12 C 0.304 3.696 13 O -0.388 6.388 14 N -0.329 5.329 15 C 0.037 3.963 16 C -0.069 4.069 17 C -0.159 4.159 18 C 0.133 3.867 19 O -0.296 6.296 20 C -0.771 4.771 21 S 2.795 3.205 22 N -0.925 5.925 23 O -0.936 6.936 24 O -0.955 6.955 25 C -0.059 4.059 26 H 0.073 0.927 27 H 0.034 0.966 28 H 0.030 0.970 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.252 0.748 34 H 0.169 0.831 35 H 0.162 0.838 36 H 0.252 0.748 37 H 0.252 0.748 38 H 0.240 0.760 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 23.741 -18.110 2.372 29.954 hybrid contribution -0.497 0.819 0.533 1.096 sum 23.245 -17.290 2.905 29.115 Atomic orbital electron populations 1.69916 1.06323 1.26886 1.51077 1.25056 0.94757 0.99200 0.94625 0.86756 0.80296 0.83605 0.78437 1.20331 1.21405 1.19045 1.21129 0.89433 0.94554 1.50774 0.90948 1.19604 0.97429 0.91914 0.96221 1.21301 0.88722 0.99923 1.02680 1.21935 1.01048 0.90695 1.04376 1.21527 0.80612 0.93370 0.74088 1.90708 1.54845 1.46566 1.46649 1.43895 1.08731 1.06282 1.73995 1.17857 0.94988 0.86270 0.97201 1.21508 0.99456 0.92194 0.93767 1.21445 0.95613 0.97234 1.01646 1.17807 0.90977 0.84345 0.93618 1.85012 1.71610 1.17054 1.55932 1.30576 1.25088 1.02679 1.18721 1.01464 0.72633 0.73186 0.73215 1.53038 1.18824 1.63727 1.56889 1.93650 1.65532 1.73683 1.60738 1.93600 1.78494 1.50434 1.72945 1.20608 0.95414 0.94239 0.95665 0.92723 0.96568 0.97021 0.91954 0.91917 0.88737 0.88649 0.74821 0.83069 0.83773 0.74801 0.74804 0.75989 0.82930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.79 13.96 55.43 0.77 -27.01 16 2 C 0.06 1.87 5.47 -17.82 -0.10 1.77 16 3 Si 0.88 21.24 27.47 -169.99 -4.67 16.57 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.03 6.54 56.52 0.37 -5.67 16 7 C -0.52 -14.74 9.66 -34.44 -0.33 -15.07 16 8 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 9 C -0.01 -0.33 4.04 -27.88 -0.11 -0.44 16 10 C -0.09 -1.68 4.44 -26.73 -0.12 -1.79 16 11 C -0.14 -1.88 5.70 -27.88 -0.16 -2.04 16 12 C 0.51 6.80 7.57 -10.98 -0.08 6.72 16 13 O -0.51 -8.58 13.67 5.55 0.08 -8.50 16 14 N -0.68 -6.76 5.35 -9.82 -0.05 -6.81 16 15 C 0.13 1.39 6.28 -83.62 -0.53 0.87 16 16 C -0.05 -0.53 8.65 -39.41 -0.34 -0.87 16 17 C -0.14 -1.26 9.98 -39.46 -0.39 -1.65 16 18 C 0.18 1.54 6.65 -39.22 -0.26 1.28 16 19 O -0.49 -3.39 12.28 -29.58 -0.36 -3.75 16 20 C -0.68 -6.00 5.89 -39.46 -0.23 -6.23 16 21 S 2.71 22.25 5.86 -107.50 -0.63 21.62 16 22 N -1.25 -4.58 9.55 60.35 0.58 -4.01 16 23 O -0.95 -11.18 17.29 -62.55 -1.08 -12.26 16 24 O -0.97 -10.64 16.97 -57.17 -0.97 -11.61 16 25 C -0.04 -0.35 9.46 -39.41 -0.37 -0.72 16 26 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 27 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 28 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 29 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 30 H 0.06 1.27 8.10 -51.93 -0.42 0.85 16 31 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.42 2.73 8.82 -40.82 -0.36 2.37 16 34 H 0.15 1.80 6.41 -52.49 -0.34 1.47 16 35 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.39 0.57 9.06 45.56 0.41 0.98 16 37 H 0.42 0.87 8.96 -34.47 -0.31 0.56 16 38 H 0.41 0.47 8.92 -34.47 -0.31 0.16 16 39 H 0.15 1.19 7.33 -52.49 -0.38 0.81 16 LS Contribution 348.05 15.07 5.25 5.25 Total: -1.00 -40.33 348.05 -7.87 -48.20 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -3.75 Total: 0.50 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: -3.03 Total: -18.18 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: 1.30 Total: -37.83 kcal Atomic # 8 Polarization: -33.79 SS G_CDS: -2.34 Total: -36.13 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.67 Total: 16.57 kcal Atomic # 16 Polarization: 22.25 SS G_CDS: -0.63 Total: 21.62 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -40.33 -7.87 -48.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153032466.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.628 kcal (2) G-P(sol) polarization free energy of solvation -40.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds