Wall clock time and date at job start Tue Mar 31 2020 14:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00108 * 2 1 4 4 H 1.48500 * 109.46896 * 270.00134 * 3 2 1 5 5 H 1.48501 * 109.47074 * 29.99824 * 3 2 1 6 6 H 1.48494 * 109.47348 * 149.99959 * 3 2 1 7 7 C 1.37874 * 119.99749 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00563 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99827 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47439 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47509 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.47081 * 179.97438 * 11 10 9 13 13 O 1.21286 * 120.00444 * 0.02562 * 12 11 10 14 14 N 1.34781 * 119.99540 * 179.97438 * 12 11 10 15 15 C 1.40111 * 119.99559 * 185.27261 * 14 12 11 16 16 C 1.38874 * 120.01565 * 33.30573 * 15 14 12 17 17 C 1.38066 * 119.98583 * 179.97438 * 16 15 14 18 18 C 1.38747 * 120.01208 * 0.02562 * 17 16 15 19 19 O 1.35969 * 119.98471 * 179.97438 * 18 17 16 20 20 C 1.38695 * 120.03171 * 359.97438 * 18 17 16 21 21 S 1.76202 * 119.99296 * 179.97438 * 20 18 17 22 22 N 1.65596 * 107.21835 * 295.00457 * 21 20 18 23 23 O 1.42111 * 106.40278 * 48.54371 * 21 20 18 24 24 O 1.42096 * 106.40217 * 181.45900 * 21 20 18 25 25 C 1.38109 * 120.01807 * 0.25770 * 20 18 17 26 26 H 0.96997 * 120.00265 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47135 * 60.00393 * 9 7 2 28 28 H 1.09006 * 109.47149 * 300.00331 * 9 7 2 29 29 H 1.09002 * 109.47112 * 59.99797 * 10 9 7 30 30 H 1.09003 * 109.47170 * 300.00261 * 10 9 7 31 31 H 1.09002 * 109.47293 * 59.99671 * 11 10 9 32 32 H 1.09006 * 109.46920 * 299.99652 * 11 10 9 33 33 H 0.96994 * 120.00278 * 5.27470 * 14 12 11 34 34 H 1.07997 * 120.00406 * 359.95305 * 16 15 14 35 35 H 1.07991 * 119.99434 * 179.97438 * 17 16 15 36 36 H 0.96705 * 113.99985 * 270.02205 * 19 18 17 37 37 H 0.97003 * 119.99893 * 180.02562 * 22 21 20 38 38 H 0.97000 * 120.00123 * 359.97438 * 22 21 20 39 39 H 1.07992 * 120.01279 * 179.74403 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0044 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6365 0.0001 11 6 5.5515 -2.6366 0.0001 12 6 6.0538 -4.0574 0.0009 13 8 5.2657 -4.9793 0.0009 14 7 7.3789 -4.3036 0.0005 15 6 7.8468 -5.6197 -0.1103 16 6 7.1425 -6.5459 -0.8683 17 6 7.6044 -7.8424 -0.9775 18 6 8.7717 -8.2201 -0.3297 19 8 9.2258 -9.4972 -0.4372 20 6 9.4756 -7.2956 0.4276 21 16 10.9576 -7.7765 1.2505 22 7 10.5407 -8.8980 2.3954 23 8 11.7474 -8.4608 0.2875 24 8 11.4136 -6.6315 1.9576 25 6 9.0122 -5.9996 0.5416 26 1 -0.4850 0.8400 0.0004 27 1 3.8752 -0.6797 0.8895 28 1 3.8745 -0.6808 -0.8905 29 1 3.6578 -3.1506 -0.8896 30 1 3.6585 -3.1502 0.8903 31 1 5.9149 -2.1226 0.8901 32 1 5.9149 -2.1228 -0.8900 33 1 8.0086 -3.5699 0.0770 34 1 6.2335 -6.2521 -1.3720 35 1 7.0566 -8.5628 -1.5667 36 1 8.8876 -10.0936 0.2448 37 1 11.2238 -9.2899 2.9617 38 1 9.6134 -9.1624 2.5002 39 1 9.5581 -5.2809 1.1346 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153032466.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:23 Heat of formation + Delta-G solvation = -167.811607 kcal Electronic energy + Delta-G solvation = -24793.228488 eV Core-core repulsion = 20826.469100 eV Total energy + Delta-G solvation = -3966.759388 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.81734 -40.43668 -38.48184 -37.86139 -36.93356 -36.16083 -35.45218 -34.14015 -34.07542 -32.56897 -30.90534 -29.37637 -25.86474 -24.89808 -23.73296 -22.27388 -21.43506 -20.55060 -19.89952 -19.37774 -18.96112 -18.44000 -18.23260 -17.68153 -17.21684 -16.82409 -16.66394 -16.35985 -16.22648 -16.03742 -15.27043 -15.16691 -14.97155 -14.71230 -14.27760 -13.97631 -13.81118 -13.37698 -13.24980 -13.23233 -13.16211 -13.05912 -12.78353 -12.71421 -12.50038 -11.82804 -11.78159 -11.72326 -11.52366 -11.47617 -11.37011 -11.31790 -10.95230 -10.74459 -10.51717 -9.28231 -8.27239 -6.32677 -0.68629 -0.45152 -0.06598 1.39453 1.42441 1.42825 1.54296 1.87819 2.08047 2.29575 2.39311 2.63352 2.88165 3.08261 3.43875 3.60282 3.80101 3.94526 4.08413 4.21416 4.25279 4.28928 4.51861 4.60064 4.76179 4.90968 4.92743 4.97160 4.98868 5.04953 5.17143 5.25320 5.55626 5.61005 5.62821 5.68856 6.29698 6.31633 6.32555 6.57462 6.76557 7.04041 7.31812 8.90267 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.030088 B = 0.002112 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.388270 B =13254.793038 C =13796.882420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.005 4.005 3 Si 0.961 3.039 4 H -0.266 1.266 5 H -0.289 1.289 6 H -0.234 1.234 7 C -0.538 4.538 8 H 0.020 0.980 9 C -0.011 4.011 10 C -0.082 4.082 11 C -0.130 4.130 12 C 0.517 3.483 13 O -0.558 6.558 14 N -0.664 5.664 15 C 0.114 3.886 16 C -0.064 4.064 17 C -0.145 4.145 18 C 0.191 3.809 19 O -0.492 6.492 20 C -0.686 4.686 21 S 2.733 3.267 22 N -1.232 6.232 23 O -0.984 6.984 24 O -0.993 6.993 25 C -0.035 4.035 26 H 0.266 0.734 27 H 0.031 0.969 28 H 0.029 0.971 29 H 0.039 0.961 30 H 0.039 0.961 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.433 0.567 34 H 0.134 0.866 35 H 0.160 0.840 36 H 0.420 0.580 37 H 0.432 0.568 38 H 0.428 0.572 39 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.491 -17.728 3.786 32.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.200 4.200 3 Si 0.783 3.217 4 H -0.191 1.191 5 H -0.215 1.215 6 H -0.157 1.157 7 C -0.576 4.576 8 H 0.039 0.961 9 C -0.048 4.048 10 C -0.120 4.120 11 C -0.169 4.169 12 C 0.307 3.693 13 O -0.436 6.436 14 N -0.311 5.311 15 C 0.018 3.982 16 C -0.084 4.084 17 C -0.164 4.164 18 C 0.144 3.856 19 O -0.307 6.307 20 C -0.774 4.774 21 S 2.820 3.180 22 N -0.913 5.913 23 O -0.973 6.973 24 O -0.983 6.983 25 C -0.056 4.056 26 H 0.074 0.926 27 H 0.050 0.950 28 H 0.048 0.952 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.142 0.858 32 H 0.142 0.858 33 H 0.273 0.727 34 H 0.152 0.848 35 H 0.178 0.822 36 H 0.282 0.718 37 H 0.266 0.734 38 H 0.258 0.742 39 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 26.957 -17.561 2.988 32.311 hybrid contribution -1.542 0.421 0.364 1.639 sum 25.415 -17.139 3.352 30.837 Atomic orbital electron populations 1.70103 1.08696 1.28237 1.52773 1.26196 0.95727 1.04129 0.93986 0.85512 0.79736 0.77157 0.79306 1.19051 1.21469 1.15681 1.21562 0.92775 0.92783 1.50517 0.96117 1.19559 0.93397 0.94460 0.97412 1.21058 0.93164 0.97163 1.00607 1.21769 0.96470 0.91470 1.07219 1.21427 0.81377 0.92804 0.73660 1.90705 1.56225 1.47636 1.48990 1.43585 1.07843 1.06932 1.72773 1.17947 0.95683 0.86360 0.98182 1.21496 0.99205 0.93257 0.94458 1.21613 0.96049 0.96898 1.01862 1.17811 0.90278 0.85031 0.92529 1.84958 1.71742 1.16720 1.57312 1.30633 1.25028 1.02711 1.19023 1.00483 0.71829 0.72831 0.72854 1.52590 1.20148 1.62678 1.55861 1.93612 1.66929 1.74345 1.62374 1.93566 1.79233 1.52087 1.73382 1.20763 0.94866 0.94725 0.95263 0.92571 0.95044 0.95225 0.94165 0.94220 0.85812 0.85776 0.72738 0.84810 0.82245 0.71842 0.73448 0.74218 0.81461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.88 13.96 21.45 0.30 -60.58 16 2 C 0.00 -0.26 5.47 84.65 0.46 0.20 16 3 Si 0.96 42.91 27.47 68.60 1.88 44.79 16 4 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 5 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.23 -9.20 6.54 99.48 0.65 -8.55 16 7 C -0.54 -31.36 9.66 25.60 0.25 -31.11 16 8 H 0.02 1.36 7.99 -2.91 -0.02 1.33 16 9 C -0.01 -0.48 4.04 29.85 0.12 -0.36 16 10 C -0.08 -3.10 4.44 30.59 0.14 -2.97 16 11 C -0.13 -3.15 5.70 29.85 0.17 -2.98 16 12 C 0.52 13.10 7.57 87.66 0.66 13.76 16 13 O -0.56 -19.00 13.67 -3.05 -0.04 -19.04 16 14 N -0.66 -11.91 5.35 -303.38 -1.62 -13.53 16 15 C 0.11 2.25 6.28 38.11 0.24 2.49 16 16 C -0.06 -1.36 8.65 22.38 0.19 -1.17 16 17 C -0.14 -2.47 9.98 22.35 0.22 -2.25 16 18 C 0.19 2.93 6.65 22.50 0.15 3.08 16 19 O -0.49 -5.76 12.28 -83.69 -1.03 -6.79 16 20 C -0.69 -10.84 5.89 22.35 0.13 -10.71 16 21 S 2.73 40.15 5.86 -56.49 -0.33 39.82 16 22 N -1.23 -6.02 9.55 37.02 0.35 -5.67 16 23 O -0.98 -21.88 17.29 -122.86 -2.12 -24.00 16 24 O -0.99 -20.27 16.97 -128.00 -2.17 -22.45 16 25 C -0.03 -0.58 9.46 22.38 0.21 -0.37 16 26 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 27 H 0.03 1.30 7.20 -2.39 -0.02 1.28 16 28 H 0.03 1.21 7.57 -2.38 -0.02 1.19 16 29 H 0.04 1.66 8.10 -2.39 -0.02 1.64 16 30 H 0.04 1.65 8.10 -2.39 -0.02 1.63 16 31 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.12 2.36 8.14 -2.38 -0.02 2.34 16 33 H 0.43 4.42 8.82 -92.71 -0.82 3.60 16 34 H 0.13 3.33 6.41 -2.91 -0.02 3.31 16 35 H 0.16 2.10 8.06 -2.92 -0.02 2.08 16 36 H 0.42 0.04 9.06 -74.05 -0.67 -0.63 16 37 H 0.43 0.70 8.96 -96.75 -0.87 -0.17 16 38 H 0.43 -0.24 8.92 -96.75 -0.86 -1.11 16 39 H 0.17 2.24 7.33 -2.91 -0.02 2.22 16 Total: -1.00 -91.22 348.05 -3.96 -95.18 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -2.12 Total: 4.65 kcal Atomic # 6 Polarization: -35.33 SS G_CDS: 2.95 Total: -32.38 kcal Atomic # 7 Polarization: -78.81 SS G_CDS: -0.97 Total: -79.78 kcal Atomic # 8 Polarization: -66.91 SS G_CDS: -5.37 Total: -72.28 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 1.88 Total: 44.79 kcal Atomic # 16 Polarization: 40.15 SS G_CDS: -0.33 Total: 39.82 kcal Total: -91.22 -3.96 -95.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153032466.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.632 kcal (2) G-P(sol) polarization free energy of solvation -91.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds