Wall clock time and date at job start Tue Mar 31 2020 14:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30877 * 1 3 3 Si 1.86797 * 120.00205 * 2 1 4 4 H 1.48500 * 109.47214 * 270.00214 * 3 2 1 5 5 H 1.48500 * 109.46902 * 29.99859 * 3 2 1 6 6 H 1.48493 * 109.47184 * 149.99994 * 3 2 1 7 7 C 1.39898 * 119.99865 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99993 * 197.64536 * 7 2 1 9 9 C 1.41169 * 120.00232 * 17.64446 * 7 2 1 10 10 C 1.40856 * 120.57720 * 203.65929 * 9 7 2 11 11 N 1.31399 * 120.38072 * 180.23533 * 10 9 7 12 12 C 1.32710 * 121.75610 * 359.47115 * 11 10 9 13 13 N 1.38961 * 119.42295 * 180.29468 * 12 11 10 14 14 N 1.39877 * 125.48827 * 180.25589 * 13 12 11 15 15 C 1.30283 * 110.11378 * 179.97438 * 14 13 12 16 16 C 1.46060 * 107.85263 * 359.97438 * 15 14 13 17 17 C 1.37466 * 125.49068 * 359.94990 * 13 12 11 18 18 C 1.39115 * 133.82373 * 0.74760 * 17 13 12 19 19 C 1.37735 * 119.73644 * 179.58350 * 18 17 13 20 20 C 1.38866 * 120.65170 * 359.73892 * 19 18 17 21 21 C 1.36558 * 120.62084 * 359.97438 * 20 19 18 22 22 C 1.50697 * 120.11055 * 180.02562 * 21 20 19 23 23 N 1.46894 * 109.47143 * 259.97746 * 22 21 20 24 24 C 1.39655 * 121.15125 * 0.53078 * 12 11 10 25 25 Cl 1.73606 * 120.26303 * 179.71931 * 24 12 11 26 26 C 1.36738 * 119.48013 * 359.74318 * 24 12 11 27 27 H 0.97000 * 119.99915 * 0.02562 * 1 2 3 28 28 H 1.08001 * 119.80475 * 359.95146 * 10 9 7 29 29 H 1.07996 * 126.07265 * 179.97438 * 15 14 13 30 30 H 1.08001 * 120.12834 * 359.29744 * 18 17 13 31 31 H 1.07999 * 119.66960 * 179.75843 * 19 18 17 32 32 H 1.08005 * 119.69250 * 179.97438 * 20 19 18 33 33 H 1.09005 * 109.47445 * 19.98267 * 22 21 20 34 34 H 1.09005 * 109.47134 * 139.97780 * 22 21 20 35 35 H 1.00900 * 111.00087 * 180.02562 * 23 22 21 36 36 H 1.00897 * 111.00188 * 303.95665 * 23 22 21 37 37 H 1.08005 * 120.81211 * 180.02562 * 26 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4903 2.0464 -1.4001 5 1 1.4402 2.6526 0.7000 6 1 3.5403 1.4401 0.7000 7 6 2.0082 -1.2116 -0.0005 8 1 3.0502 -1.2337 0.2830 9 6 1.3522 -2.4052 -0.3716 10 6 1.8308 -3.6535 0.0718 11 7 1.2199 -4.7625 -0.2797 12 6 0.1371 -4.7504 -1.0469 13 7 -0.4740 -5.9519 -1.3842 14 7 -1.6126 -6.0871 -2.1854 15 6 -1.9277 -7.3453 -2.3076 16 6 -0.9537 -8.1265 -1.5497 17 6 -0.0536 -7.1997 -0.9891 18 6 0.9944 -7.6569 -0.1966 19 6 1.1462 -9.0082 0.0222 20 6 0.2599 -9.9198 -0.5362 21 6 -0.7795 -9.4933 -1.3125 22 6 -1.7348 -10.4926 -1.9123 23 7 -1.3784 -10.7282 -3.3177 24 6 -0.3960 -3.5515 -1.5252 25 17 -1.8094 -3.5630 -2.5333 26 6 0.2042 -2.3684 -1.1936 27 1 -0.4850 0.8401 -0.0004 28 1 2.7077 -3.6997 0.7007 29 1 -2.7611 -7.7404 -2.8694 30 1 1.6889 -6.9553 0.2414 31 1 1.9625 -9.3623 0.6344 32 1 0.3938 -10.9761 -0.3548 33 1 -1.6740 -11.4304 -1.3599 34 1 -2.7512 -10.1029 -1.8556 35 1 -2.0051 -11.3950 -3.7428 36 1 -1.3646 -9.8633 -3.8372 37 1 -0.1902 -1.4287 -1.5512 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158313648.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:15 Heat of formation + Delta-G solvation = 119.050339 kcal Electronic energy + Delta-G solvation = -24378.905138 eV Core-core repulsion = 20762.142982 eV Total energy + Delta-G solvation = -3616.762156 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.079 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.01951 -38.76575 -37.22197 -35.52116 -34.77257 -34.51411 -32.38201 -30.84715 -30.25288 -29.46162 -28.81365 -25.63478 -24.79671 -22.97465 -22.51906 -21.71212 -21.06582 -19.83027 -17.82350 -17.14541 -16.64724 -15.91061 -15.58811 -15.25057 -15.13605 -14.79616 -14.67074 -14.41483 -14.30424 -13.55216 -13.33222 -12.92768 -12.91569 -12.47690 -12.24406 -12.01075 -11.70854 -11.59349 -11.48202 -11.39946 -11.15189 -11.02297 -10.81395 -10.63756 -10.32910 -10.10604 -9.59586 -9.41816 -8.83065 -8.60704 -8.43190 -8.26367 -8.21365 -7.28013 -7.04259 -4.74222 1.19266 1.70239 2.26894 2.49730 2.80286 2.81704 2.87497 2.90314 3.12067 3.15033 3.62023 4.03298 4.27114 4.65199 4.77637 4.87121 4.99656 5.19265 5.21115 5.34178 5.42948 5.55113 5.75197 5.78453 5.98211 6.05635 6.18620 6.31484 6.45058 6.62155 6.70589 6.75681 6.82208 6.86856 6.89960 6.97712 7.23246 7.32660 7.34403 7.43074 7.81857 8.00710 8.05273 8.27377 8.29517 9.07809 9.70403 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.023622 B = 0.003363 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.068307 B = 8323.498341 C = 9350.412785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.070 3.930 3 Si 0.920 3.080 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.425 4.425 8 H 0.093 0.907 9 C 0.064 3.936 10 C 0.007 3.993 11 N -0.460 5.460 12 C 0.207 3.793 13 N -0.305 5.305 14 N -0.214 5.214 15 C 0.038 3.962 16 C -0.175 4.175 17 C 0.132 3.868 18 C -0.109 4.109 19 C -0.094 4.094 20 C -0.143 4.143 21 C -0.023 4.023 22 C 0.104 3.896 23 N -0.845 5.845 24 C -0.036 4.036 25 Cl -0.073 7.073 26 C -0.120 4.120 27 H 0.291 0.709 28 H 0.145 0.855 29 H 0.186 0.814 30 H 0.144 0.856 31 H 0.124 0.876 32 H 0.119 0.881 33 H 0.078 0.922 34 H 0.035 0.965 35 H 0.339 0.661 36 H 0.344 0.656 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.159 -10.608 -2.244 11.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.152 4.152 3 Si 0.743 3.257 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.453 4.453 8 H 0.111 0.889 9 C 0.058 3.942 10 C -0.157 4.157 11 N -0.171 5.171 12 C -0.018 4.018 13 N -0.086 5.086 14 N -0.027 5.027 15 C -0.158 4.158 16 C -0.184 4.184 17 C 0.018 3.982 18 C -0.130 4.130 19 C -0.115 4.115 20 C -0.164 4.164 21 C -0.026 4.026 22 C -0.026 4.026 23 N -0.375 5.375 24 C -0.067 4.067 25 Cl -0.044 7.044 26 C -0.146 4.146 27 H 0.102 0.898 28 H 0.163 0.837 29 H 0.203 0.797 30 H 0.161 0.839 31 H 0.142 0.858 32 H 0.137 0.863 33 H 0.097 0.903 34 H 0.054 0.946 35 H 0.151 0.849 36 H 0.157 0.843 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -1.804 -10.184 -2.054 10.544 hybrid contribution -0.931 1.237 -0.300 1.577 sum -2.736 -8.947 -2.353 9.647 Atomic orbital electron populations 1.69783 1.07901 1.30662 1.30983 1.26126 0.94926 1.02260 0.91906 0.86085 0.80447 0.79322 0.79814 1.18794 1.19864 1.18078 1.19653 0.98463 0.90541 1.36656 0.88854 1.18487 0.91636 0.93999 0.90072 1.22376 1.02410 0.86458 1.04501 1.66328 1.06160 1.33237 1.11397 1.16717 0.96772 0.80786 1.07536 1.44930 1.21209 1.02674 1.39772 1.77277 0.98388 1.18466 1.08571 1.25054 0.99770 0.90053 1.00949 1.19650 0.99161 0.93487 1.06092 1.18764 0.96618 0.84719 0.98101 1.20582 0.97534 0.95779 0.99146 1.20944 0.98937 0.92172 0.99420 1.20421 0.95918 0.99190 1.00843 1.18768 0.96196 0.90658 0.96949 1.20642 0.94999 0.97330 0.89588 1.58712 1.59011 1.17011 1.02763 1.20877 0.92228 0.93957 0.99658 1.98295 1.39752 1.98528 1.67831 1.21337 0.98210 0.95729 0.99317 0.89754 0.83729 0.79728 0.83868 0.85799 0.86293 0.90339 0.94640 0.84852 0.84312 0.83757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.78 10.92 55.55 0.61 -17.18 16 2 C 0.07 1.53 5.17 -17.34 -0.09 1.44 16 3 Si 0.92 16.38 29.59 -169.99 -5.03 11.35 16 4 H -0.26 -4.69 7.11 56.52 0.40 -4.29 16 5 H -0.27 -4.82 7.11 56.52 0.40 -4.42 16 6 H -0.26 -4.49 7.11 56.52 0.40 -4.09 16 7 C -0.42 -9.75 9.07 -37.85 -0.34 -10.09 16 8 H 0.09 1.98 7.91 -52.48 -0.41 1.57 16 9 C 0.06 1.53 5.59 -106.65 -0.60 0.93 16 10 C 0.01 0.15 10.97 -16.75 -0.18 -0.03 16 11 N -0.46 -10.71 8.03 -11.65 -0.09 -10.80 16 12 C 0.21 4.96 7.54 -154.60 -1.17 3.79 16 13 N -0.31 -6.75 3.80 -9.84 -0.04 -6.79 16 14 N -0.21 -4.29 8.98 31.90 0.29 -4.01 16 15 C 0.04 0.61 12.14 -15.07 -0.18 0.43 16 16 C -0.18 -2.97 6.15 -105.19 -0.65 -3.62 16 17 C 0.13 2.64 6.78 -84.03 -0.57 2.07 16 18 C -0.11 -1.96 9.55 -39.44 -0.38 -2.34 16 19 C -0.09 -1.37 10.01 -39.53 -0.40 -1.77 16 20 C -0.14 -1.96 9.59 -39.96 -0.38 -2.34 16 21 C -0.02 -0.32 5.39 -104.64 -0.56 -0.89 16 22 C 0.10 1.11 6.82 -4.98 -0.03 1.08 16 23 N -0.84 -8.40 9.61 -11.41 -0.11 -8.51 16 24 C -0.04 -0.86 6.32 -39.60 -0.25 -1.11 16 25 Cl -0.07 -1.56 25.77 -51.86 -1.34 -2.89 16 26 C -0.12 -2.93 8.53 -38.98 -0.33 -3.26 16 27 H 0.29 6.07 8.30 -40.82 -0.34 5.74 16 28 H 0.15 2.89 8.06 -52.49 -0.42 2.46 16 29 H 0.19 2.17 8.06 -52.49 -0.42 1.75 16 30 H 0.14 2.70 6.58 -52.49 -0.35 2.35 16 31 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 32 H 0.12 1.32 8.01 -52.48 -0.42 0.90 16 33 H 0.08 0.74 7.98 -51.93 -0.41 0.32 16 34 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.34 2.48 9.08 -39.29 -0.36 2.12 16 36 H 0.34 3.53 8.98 -39.29 -0.35 3.18 16 37 H 0.14 3.59 6.19 -52.48 -0.32 3.26 16 LS Contribution 333.00 15.07 5.02 5.02 Total: -1.00 -27.44 333.00 -10.27 -37.71 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -3.46 Total: 11.80 kcal Atomic # 6 Polarization: -9.59 SS G_CDS: -6.12 Total: -15.70 kcal Atomic # 7 Polarization: -47.93 SS G_CDS: 0.65 Total: -47.28 kcal Atomic # 14 Polarization: 16.38 SS G_CDS: -5.03 Total: 11.35 kcal Atomic # 17 Polarization: -1.56 SS G_CDS: -1.34 Total: -2.89 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -27.44 -10.27 -37.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158313648.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.761 kcal (2) G-P(sol) polarization free energy of solvation -27.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds