Wall clock time and date at job start Tue Mar 31 2020 16:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.47200 * 109.47143 * 2 1 4 4 N 2.60797 * 109.47301 * 0.02562 * 2 1 3 5 5 N 1.46503 * 109.47092 * 120.00146 * 2 1 3 6 6 C 1.38824 * 120.00242 * 186.04811 * 5 2 1 7 7 C 1.39966 * 119.96678 * 356.87861 * 6 5 2 8 8 N 1.32127 * 120.31542 * 179.97438 * 7 6 5 9 9 C 1.31926 * 120.27408 * 359.97438 * 8 7 6 10 10 C 1.40686 * 119.93430 * 0.02562 * 9 8 7 11 11 C 1.41272 * 120.15866 * 180.02562 * 10 9 8 12 12 H 1.08006 * 120.00038 * 353.44634 * 11 10 9 13 13 C 1.40053 * 120.00052 * 173.44798 * 11 10 9 14 14 N 1.30724 * 119.99957 * 6.55978 * 13 11 10 15 15 Si 1.86807 * 119.99971 * 186.55571 * 13 11 10 16 16 H 1.48498 * 109.46587 * 90.00198 * 15 13 11 17 17 H 1.48500 * 109.47118 * 210.00044 * 15 13 11 18 18 H 1.48498 * 109.47185 * 330.00155 * 15 13 11 19 19 N 1.32233 * 119.97287 * 176.85028 * 6 5 2 20 20 C 1.50706 * 109.47033 * 239.99974 * 2 1 3 21 21 C 1.38230 * 120.00590 * 246.15446 * 20 2 1 22 22 C 1.38223 * 120.01268 * 179.77069 * 21 20 2 23 23 C 1.38258 * 120.02296 * 0.50987 * 22 21 20 24 24 C 1.38191 * 120.01907 * 359.74364 * 23 22 21 25 25 C 1.38324 * 120.00486 * 66.43370 * 20 2 1 26 26 Cl 1.73599 * 120.01550 * 359.95584 * 25 20 2 27 27 H 1.09003 * 109.47204 * 304.48147 * 1 2 3 28 28 H 1.09000 * 109.46974 * 64.48033 * 1 2 3 29 29 H 1.09002 * 109.47006 * 184.47885 * 1 2 3 30 30 H 0.96999 * 119.99651 * 6.04991 * 5 2 1 31 31 H 1.07999 * 119.84373 * 359.97438 * 7 6 5 32 32 H 1.08001 * 120.03556 * 179.97438 * 9 8 7 33 33 H 0.97004 * 120.00235 * 179.97438 * 14 13 11 34 34 H 1.08004 * 119.99998 * 0.02562 * 21 20 2 35 35 H 1.07998 * 119.98848 * 180.27592 * 22 21 20 36 36 H 1.08003 * 119.99488 * 179.76863 * 23 22 21 37 37 H 1.08000 * 120.01257 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0207 1.3878 0.0000 4 7 2.3994 2.4588 0.0011 5 7 2.0183 -0.6907 1.1962 6 6 3.3769 -0.7089 1.4812 7 6 4.2857 -0.1240 0.5919 8 7 5.5801 -0.1370 0.8565 9 6 6.0273 -0.7013 1.9620 10 6 5.1236 -1.2925 2.8636 11 6 5.5972 -1.8976 4.0491 12 1 6.6593 -2.0016 4.2152 13 6 4.6895 -2.3627 5.0089 14 7 3.4073 -2.3546 4.7540 15 14 5.3109 -2.9946 6.6533 16 1 5.3777 -1.8710 7.6220 17 1 4.3842 -4.0356 7.1658 18 1 6.6648 -3.5794 6.4793 19 7 3.8111 -1.2785 2.5928 20 6 2.0323 -0.7104 -1.2305 21 6 2.7190 -1.9038 -1.1078 22 6 3.1756 -2.5580 -2.2366 23 6 2.9551 -2.0137 -3.4883 24 6 2.2733 -0.8181 -3.6120 25 6 1.8114 -0.1655 -2.4825 26 17 0.9544 1.3363 -2.6370 27 1 -0.3634 0.5818 0.8471 28 1 -0.3633 0.4427 -0.9274 29 1 -0.3633 -1.0245 0.0803 30 1 1.3924 -1.1352 1.7890 31 1 3.9273 0.3403 -0.3150 32 1 7.0862 -0.7101 2.1743 33 1 2.7786 -2.6771 5.4186 34 1 2.8952 -2.3274 -0.1300 35 1 3.7082 -3.4926 -2.1405 36 1 3.3154 -2.5234 -4.3697 37 1 2.1015 -0.3929 -4.5897 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158483086.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:04 Heat of formation + Delta-G solvation = 94.447149 kcal Electronic energy + Delta-G solvation = -25265.492559 eV Core-core repulsion = 21647.663529 eV Total energy + Delta-G solvation = -3617.829031 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.079 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.77858 -40.35630 -38.51133 -37.57252 -36.62976 -35.84375 -34.20889 -32.83729 -31.71174 -31.13923 -29.79058 -27.78054 -25.84452 -24.23016 -23.79236 -23.29247 -22.73779 -19.78140 -19.07443 -18.51227 -18.13475 -17.18423 -17.03266 -16.64796 -16.38099 -15.93408 -15.58089 -15.21744 -15.14023 -14.81973 -14.73125 -14.53604 -14.17946 -13.89841 -13.63499 -13.28159 -13.27201 -13.16660 -13.00514 -12.87883 -12.57095 -12.51959 -12.39221 -12.25911 -11.99852 -11.88776 -11.57738 -11.48935 -11.40475 -10.35597 -9.90947 -9.72691 -9.37180 -8.75039 -8.36174 -6.64166 0.06526 0.26766 0.76877 1.02262 1.19424 1.40186 1.44492 1.56784 1.58240 1.63800 2.21834 2.43102 2.50671 2.79558 2.85006 3.38382 3.73161 3.84906 3.89071 4.12336 4.14082 4.32470 4.35834 4.43302 4.51545 4.58461 4.63903 4.71661 4.84550 4.94608 5.06853 5.10076 5.17486 5.20828 5.34540 5.48849 5.62357 5.81641 6.02568 6.08747 6.37641 6.58552 6.61060 6.90157 7.42594 7.99185 8.33352 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.018995 B = 0.003954 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.683965 B = 7079.805683 C = 7405.927911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.334 3.666 3 C 0.217 3.783 4 N -0.450 5.450 5 N -0.703 5.703 6 C 0.370 3.630 7 C -0.162 4.162 8 N -0.421 5.421 9 C -0.126 4.126 10 C 0.215 3.785 11 C -0.435 4.435 12 H 0.100 0.900 13 C 0.027 3.973 14 N -0.735 5.735 15 Si 0.990 3.010 16 H -0.268 1.268 17 H -0.265 1.265 18 H -0.253 1.253 19 N -0.523 5.523 20 C -0.102 4.102 21 C -0.080 4.080 22 C -0.120 4.120 23 C -0.090 4.090 24 C -0.111 4.111 25 C -0.036 4.036 26 Cl -0.065 7.065 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.110 0.890 30 H 0.417 0.583 31 H 0.123 0.877 32 H 0.141 0.859 33 H 0.285 0.715 34 H 0.114 0.886 35 H 0.142 0.858 36 H 0.168 0.832 37 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.277 -4.062 -11.451 15.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.241 3.759 3 C -0.102 4.102 4 N -0.126 5.126 5 N -0.343 5.343 6 C 0.126 3.874 7 C -0.324 4.324 8 N -0.133 5.133 9 C -0.295 4.295 10 C 0.088 3.912 11 C -0.467 4.467 12 H 0.118 0.882 13 C -0.197 4.197 14 N -0.356 5.356 15 Si 0.810 3.190 16 H -0.193 1.193 17 H -0.189 1.189 18 H -0.176 1.176 19 N -0.249 5.249 20 C -0.106 4.106 21 C -0.099 4.099 22 C -0.138 4.138 23 C -0.108 4.108 24 C -0.129 4.129 25 C -0.063 4.063 26 Cl -0.036 7.036 27 H 0.104 0.896 28 H 0.116 0.884 29 H 0.129 0.871 30 H 0.256 0.744 31 H 0.141 0.859 32 H 0.159 0.841 33 H 0.096 0.904 34 H 0.132 0.868 35 H 0.160 0.840 36 H 0.186 0.814 37 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -9.011 -2.251 -11.544 14.817 hybrid contribution 0.106 -0.298 1.106 1.150 sum -8.905 -2.550 -10.439 13.956 Atomic orbital electron populations 1.22282 0.86354 1.06623 1.05737 1.16375 0.96756 0.78504 0.84260 1.29640 0.92643 0.95171 0.92780 1.81071 1.08907 1.14322 1.08289 1.44150 1.03517 1.59848 1.26735 1.19544 0.86146 0.90699 0.90989 1.22142 0.89478 1.17203 1.03609 1.67492 1.15880 1.11630 1.18262 1.23103 1.00128 1.10690 0.95604 1.19470 0.87463 0.90583 0.93667 1.20049 0.95747 1.31126 0.99769 0.88153 1.27004 0.94580 0.94254 1.03903 1.70131 1.03480 1.27317 1.34678 0.85077 0.79714 0.78484 0.75731 1.19255 1.18926 1.17609 1.69039 1.15539 1.24404 1.15964 1.19619 1.02091 0.96831 0.92046 1.21052 0.95096 0.93904 0.99831 1.21520 0.99099 1.00900 0.92290 1.21533 0.96349 0.94571 0.98330 1.21331 0.98162 0.95633 0.97790 1.20843 1.01265 0.89603 0.94569 1.98364 1.75478 1.32097 1.97693 0.89604 0.88416 0.87146 0.74414 0.85939 0.84143 0.90407 0.86777 0.83979 0.81430 0.82175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 8.38 71.98 0.60 -2.59 16 2 C 0.33 10.13 0.75 1.05 0.00 10.13 16 3 C 0.22 7.96 8.57 89.44 0.77 8.72 16 4 N -0.45 -18.48 18.54 20.01 0.37 -18.11 16 5 N -0.70 -25.47 4.42 -316.23 -1.40 -26.87 16 6 C 0.37 17.28 5.70 133.38 0.76 18.04 16 7 C -0.16 -7.88 8.21 85.07 0.70 -7.18 16 8 N -0.42 -22.14 10.47 -192.23 -2.01 -24.15 16 9 C -0.13 -6.64 10.97 85.28 0.94 -5.71 16 10 C 0.22 11.68 6.54 40.15 0.26 11.94 16 11 C -0.43 -22.21 9.15 23.46 0.21 -22.00 16 12 H 0.10 4.73 7.86 -2.91 -0.02 4.71 16 13 C 0.03 1.27 5.49 85.30 0.47 1.74 16 14 N -0.74 -35.99 11.51 21.84 0.25 -35.74 16 15 Si 0.99 35.11 29.57 68.60 2.03 37.13 16 16 H -0.27 -9.44 7.11 99.48 0.71 -8.73 16 17 H -0.26 -8.87 7.11 99.48 0.71 -8.17 16 18 H -0.25 -8.62 7.11 99.48 0.71 -7.91 16 19 N -0.52 -27.55 8.10 -186.00 -1.51 -29.05 16 20 C -0.10 -2.97 3.34 -19.84 -0.07 -3.03 16 21 C -0.08 -2.43 7.70 22.26 0.17 -2.26 16 22 C -0.12 -2.90 10.05 22.27 0.22 -2.68 16 23 C -0.09 -1.70 10.04 22.26 0.22 -1.47 16 24 C -0.11 -2.23 9.83 22.29 0.22 -2.01 16 25 C -0.04 -0.90 6.01 22.32 0.13 -0.77 16 26 Cl -0.07 -1.60 23.92 -2.72 -0.07 -1.67 16 27 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.10 1.88 5.63 -2.39 -0.01 1.86 16 29 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.42 13.89 8.61 -92.71 -0.80 13.09 16 31 H 0.12 5.75 4.57 -2.91 -0.01 5.74 16 32 H 0.14 6.79 8.06 -2.91 -0.02 6.77 16 33 H 0.29 12.44 8.29 -92.71 -0.77 11.67 16 34 H 0.11 4.13 5.86 -2.91 -0.02 4.11 16 35 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 36 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 37 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -67.47 327.90 3.64 -63.83 By element: Atomic # 1 Polarization: 33.39 SS G_CDS: 0.35 Total: 33.74 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: 5.62 Total: 0.88 kcal Atomic # 7 Polarization: -129.63 SS G_CDS: -4.29 Total: -133.92 kcal Atomic # 14 Polarization: 35.11 SS G_CDS: 2.03 Total: 37.13 kcal Atomic # 17 Polarization: -1.60 SS G_CDS: -0.07 Total: -1.67 kcal Total: -67.47 3.64 -63.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158483086.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.277 kcal (2) G-P(sol) polarization free energy of solvation -67.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds