Wall clock time and date at job start Tue Mar 31 2020 16:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.47199 * 109.46978 * 2 1 4 4 N 2.60801 * 109.47130 * 359.97438 * 2 1 3 5 5 N 1.46491 * 109.46987 * 239.99738 * 2 1 3 6 6 C 1.38827 * 119.99906 * 175.99643 * 5 2 1 7 7 C 1.39961 * 119.97192 * 357.37015 * 6 5 2 8 8 N 1.32125 * 120.31966 * 180.02562 * 7 6 5 9 9 C 1.31931 * 120.27192 * 359.66257 * 8 7 6 10 10 C 1.40682 * 119.92972 * 0.61300 * 9 8 7 11 11 C 1.41285 * 120.15176 * 179.68527 * 10 9 8 12 12 H 1.08001 * 119.99147 * 202.84366 * 11 10 9 13 13 C 1.40047 * 120.00342 * 22.84661 * 11 10 9 14 14 N 1.30733 * 119.99798 * 18.40712 * 13 11 10 15 15 Si 1.86796 * 120.00039 * 198.40837 * 13 11 10 16 16 H 1.48501 * 109.47182 * 265.01481 * 15 13 11 17 17 H 1.48499 * 109.47293 * 25.01823 * 15 13 11 18 18 H 1.48504 * 109.47205 * 145.01597 * 15 13 11 19 19 N 1.32237 * 119.97110 * 177.38722 * 6 5 2 20 20 C 1.50700 * 109.47030 * 119.99698 * 2 1 3 21 21 C 1.38232 * 120.00755 * 114.01781 * 20 2 1 22 22 C 1.38223 * 120.01437 * 179.97438 * 21 20 2 23 23 C 1.38262 * 120.02323 * 0.04240 * 22 21 20 24 24 C 1.38189 * 120.01976 * 359.97438 * 23 22 21 25 25 C 1.38338 * 120.00484 * 293.74430 * 20 2 1 26 26 Cl 1.73589 * 120.01473 * 359.97438 * 25 20 2 27 27 H 1.08995 * 109.47443 * 185.60296 * 1 2 3 28 28 H 1.09005 * 109.46957 * 305.60332 * 1 2 3 29 29 H 1.08996 * 109.46847 * 65.59775 * 1 2 3 30 30 H 0.97003 * 120.00164 * 355.98882 * 5 2 1 31 31 H 1.07998 * 119.83887 * 0.02562 * 7 6 5 32 32 H 1.08000 * 120.03548 * 180.30222 * 9 8 7 33 33 H 0.97001 * 120.00024 * 180.02562 * 14 13 11 34 34 H 1.07996 * 119.99334 * 0.02562 * 21 20 2 35 35 H 1.07995 * 119.98721 * 180.02562 * 22 21 20 36 36 H 1.08001 * 119.98951 * 179.97438 * 23 22 21 37 37 H 1.07991 * 120.01188 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0207 1.3878 0.0000 4 7 2.3994 2.4589 -0.0011 5 7 2.0183 -0.6906 -1.1961 6 6 3.3805 -0.7453 -1.4586 7 6 4.2828 -0.0936 -0.6100 8 7 5.5805 -0.1407 -0.8537 9 6 6.0378 -0.8083 -1.8957 10 6 5.1402 -1.4625 -2.7591 11 6 5.6243 -2.1732 -3.8801 12 1 4.9764 -2.3555 -4.7248 13 6 6.9442 -2.6412 -3.8961 14 7 7.6126 -2.7500 -2.7778 15 14 7.7494 -3.1099 -5.5151 16 1 7.6031 -4.5711 -5.7360 17 1 7.0941 -2.3733 -6.6255 18 1 9.1915 -2.7580 -5.4708 19 7 3.8243 -1.4127 -2.5104 20 6 2.0324 -0.7103 1.2305 21 6 2.7221 -1.9020 1.1077 22 6 3.1834 -2.5533 2.2362 23 6 2.9544 -2.0139 3.4885 24 6 2.2646 -0.8229 3.6127 25 6 1.8082 -0.1671 2.4829 26 17 0.9488 1.3332 2.6374 27 1 -0.3634 -1.0227 0.1003 28 1 -0.3633 0.5983 0.8356 29 1 -0.3633 0.4246 -0.9358 30 1 1.3899 -1.1099 -1.8046 31 1 3.9165 0.4504 0.2480 32 1 7.0997 -0.8483 -2.0885 33 1 8.5269 -3.0738 -2.7889 34 1 2.9014 -2.3237 0.1298 35 1 3.7226 -3.4841 2.1397 36 1 3.3147 -2.5236 4.3699 37 1 2.0862 -0.4015 4.5908 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158483087.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:09 Heat of formation + Delta-G solvation = 107.235562 kcal Electronic energy + Delta-G solvation = -25132.069738 eV Core-core repulsion = 21514.795255 eV Total energy + Delta-G solvation = -3617.274483 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.079 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.50670 -38.85300 -37.26658 -36.56543 -35.23495 -34.11437 -32.78095 -31.44512 -30.69228 -29.89538 -28.14254 -26.06825 -24.72397 -22.74003 -22.22526 -22.10116 -21.40068 -18.33066 -17.86995 -17.03235 -16.48708 -15.89863 -15.61730 -15.28051 -14.94085 -14.60039 -14.32430 -13.96082 -13.94433 -13.66938 -13.29179 -13.11319 -12.82816 -12.62215 -12.43033 -12.35572 -11.83870 -11.71815 -11.49661 -11.44434 -11.36114 -11.30312 -11.04591 -10.94842 -10.59190 -10.51061 -10.18773 -9.80143 -9.63537 -8.93396 -8.75934 -8.72664 -7.43391 -7.09060 -6.98954 -4.73471 1.06796 1.26755 2.02387 2.50231 2.78074 2.88387 2.97289 2.98541 3.03338 3.12030 3.57626 3.71088 3.80131 4.01139 4.41684 4.51347 4.76696 4.82629 5.05661 5.24687 5.40890 5.42244 5.50536 5.61435 5.68234 5.87557 5.88363 6.00664 6.10592 6.15661 6.31555 6.35245 6.48103 6.72948 6.79078 6.91694 6.97919 7.58525 7.61483 7.77044 7.98880 8.16960 8.40158 8.59978 9.25382 9.70583 9.89924 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.020183 B = 0.003782 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.983223 B = 7402.498060 C = 7947.398371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.339 3.661 3 C 0.203 3.797 4 N -0.407 5.407 5 N -0.720 5.720 6 C 0.359 3.641 7 C -0.146 4.146 8 N -0.415 5.415 9 C -0.032 4.032 10 C 0.260 3.740 11 C -0.420 4.420 12 H 0.091 0.909 13 C 0.077 3.923 14 N -0.775 5.775 15 Si 0.923 3.077 16 H -0.267 1.267 17 H -0.257 1.257 18 H -0.272 1.272 19 N -0.575 5.575 20 C -0.092 4.092 21 C -0.060 4.060 22 C -0.112 4.112 23 C -0.101 4.101 24 C -0.116 4.116 25 C -0.025 4.025 26 Cl -0.067 7.067 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.407 0.593 31 H 0.120 0.880 32 H 0.159 0.841 33 H 0.289 0.711 34 H 0.143 0.857 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.070 -1.836 9.105 14.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.246 3.754 3 C -0.117 4.117 4 N -0.082 5.082 5 N -0.359 5.359 6 C 0.120 3.880 7 C -0.305 4.305 8 N -0.127 5.127 9 C -0.203 4.203 10 C 0.131 3.869 11 C -0.454 4.454 12 H 0.109 0.891 13 C -0.145 4.145 14 N -0.400 5.400 15 Si 0.746 3.254 16 H -0.192 1.192 17 H -0.180 1.180 18 H -0.197 1.197 19 N -0.302 5.302 20 C -0.095 4.095 21 C -0.079 4.079 22 C -0.131 4.131 23 C -0.119 4.119 24 C -0.134 4.134 25 C -0.052 4.052 26 Cl -0.038 7.038 27 H 0.104 0.896 28 H 0.106 0.894 29 H 0.098 0.902 30 H 0.245 0.755 31 H 0.137 0.863 32 H 0.176 0.824 33 H 0.100 0.900 34 H 0.161 0.839 35 H 0.149 0.851 36 H 0.149 0.851 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -10.361 -0.017 9.391 13.983 hybrid contribution 0.144 -0.686 -0.779 1.048 sum -10.217 -0.703 8.612 13.381 Atomic orbital electron populations 1.22200 0.89582 1.04874 1.04789 1.15890 0.94431 0.80316 0.84791 1.29049 0.93734 0.94740 0.94140 1.81099 1.07481 1.12854 1.06808 1.44105 1.04563 1.61741 1.25527 1.19115 0.84176 0.92334 0.92329 1.22123 0.89787 1.13545 1.05094 1.67766 1.13933 1.13611 1.17380 1.23625 1.01475 1.00560 0.94674 1.19062 0.85822 0.89409 0.92572 1.19365 0.95728 1.29140 1.01152 0.89126 1.26041 0.96869 0.93106 0.98520 1.69756 1.11559 1.30810 1.27883 0.86049 0.78583 0.79547 0.81219 1.19204 1.18039 1.19661 1.68378 1.17131 1.24813 1.19879 1.19702 1.01279 0.96699 0.91854 1.21220 0.93390 0.93035 1.00236 1.21306 0.99124 1.00508 0.92128 1.21152 0.97677 0.95110 0.97971 1.20933 0.99431 0.95814 0.97248 1.20690 1.00763 0.89363 0.94428 1.98360 1.75412 1.32296 1.97741 0.89555 0.89416 0.90247 0.75540 0.86282 0.82425 0.90003 0.83914 0.85124 0.85068 0.84893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 8.32 37.16 0.31 -1.32 16 2 C 0.34 5.01 0.75 -135.76 -0.10 4.91 16 3 C 0.20 3.60 8.42 -20.76 -0.17 3.42 16 4 N -0.41 -8.02 18.54 42.15 0.78 -7.24 16 5 N -0.72 -12.16 4.48 -51.31 -0.23 -12.39 16 6 C 0.36 7.98 5.51 -155.02 -0.85 7.12 16 7 C -0.15 -3.50 8.33 -16.78 -0.14 -3.64 16 8 N -0.42 -11.00 10.47 -12.11 -0.13 -11.12 16 9 C -0.03 -0.86 9.89 -16.59 -0.16 -1.02 16 10 C 0.26 6.91 6.43 -84.83 -0.55 6.37 16 11 C -0.42 -10.69 9.29 -37.75 -0.35 -11.04 16 12 H 0.09 2.24 7.91 -52.49 -0.42 1.83 16 13 C 0.08 1.79 5.14 -17.34 -0.09 1.70 16 14 N -0.78 -18.65 10.87 55.55 0.60 -18.05 16 15 Si 0.92 17.32 29.60 -169.99 -5.03 12.29 16 16 H -0.27 -4.92 7.11 56.52 0.40 -4.51 16 17 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 18 H -0.27 -4.98 7.11 56.52 0.40 -4.57 16 19 N -0.57 -14.33 10.49 -10.14 -0.11 -14.43 16 20 C -0.09 -1.35 3.47 -104.59 -0.36 -1.71 16 21 C -0.06 -0.93 7.79 -39.59 -0.31 -1.24 16 22 C -0.11 -1.49 10.05 -39.58 -0.40 -1.89 16 23 C -0.10 -1.14 10.04 -39.59 -0.40 -1.54 16 24 C -0.12 -1.34 9.83 -39.55 -0.39 -1.73 16 25 C -0.03 -0.34 6.04 -39.49 -0.24 -0.58 16 26 Cl -0.07 -0.85 23.92 -51.86 -1.24 -2.09 16 27 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.09 0.88 5.73 -51.93 -0.30 0.58 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.41 5.98 8.60 -40.82 -0.35 5.63 16 31 H 0.12 2.76 4.56 -52.49 -0.24 2.52 16 32 H 0.16 4.27 6.04 -52.49 -0.32 3.96 16 33 H 0.29 6.22 8.29 -40.82 -0.34 5.88 16 34 H 0.14 2.53 5.75 -52.49 -0.30 2.23 16 35 H 0.13 1.56 8.06 -52.49 -0.42 1.13 16 36 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 37 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 326.34 15.07 4.92 4.92 Total: -1.00 -30.17 326.34 -7.81 -37.98 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -3.17 Total: 12.33 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: -4.21 Total: -2.19 kcal Atomic # 7 Polarization: -64.16 SS G_CDS: 0.92 Total: -63.24 kcal Atomic # 14 Polarization: 17.32 SS G_CDS: -5.03 Total: 12.29 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.24 Total: -2.09 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.17 -7.81 -37.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158483087.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.215 kcal (2) G-P(sol) polarization free energy of solvation -30.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds