Wall clock time and date at job start Tue Mar 31 2020 16:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.47199 * 109.46978 * 2 1 4 4 N 2.60801 * 109.47130 * 359.97438 * 2 1 3 5 5 N 1.46491 * 109.46987 * 239.99738 * 2 1 3 6 6 C 1.38827 * 119.99906 * 175.99643 * 5 2 1 7 7 C 1.39961 * 119.97192 * 357.37015 * 6 5 2 8 8 N 1.32125 * 120.31966 * 180.02562 * 7 6 5 9 9 C 1.31931 * 120.27192 * 359.66257 * 8 7 6 10 10 C 1.40682 * 119.92972 * 0.61300 * 9 8 7 11 11 C 1.41285 * 120.15176 * 179.68527 * 10 9 8 12 12 H 1.08001 * 119.99147 * 202.84366 * 11 10 9 13 13 C 1.40047 * 120.00342 * 22.84661 * 11 10 9 14 14 N 1.30733 * 119.99798 * 18.40712 * 13 11 10 15 15 Si 1.86796 * 120.00039 * 198.40837 * 13 11 10 16 16 H 1.48501 * 109.47182 * 265.01481 * 15 13 11 17 17 H 1.48499 * 109.47293 * 25.01823 * 15 13 11 18 18 H 1.48504 * 109.47205 * 145.01597 * 15 13 11 19 19 N 1.32237 * 119.97110 * 177.38722 * 6 5 2 20 20 C 1.50700 * 109.47030 * 119.99698 * 2 1 3 21 21 C 1.38232 * 120.00755 * 114.01781 * 20 2 1 22 22 C 1.38223 * 120.01437 * 179.97438 * 21 20 2 23 23 C 1.38262 * 120.02323 * 0.04240 * 22 21 20 24 24 C 1.38189 * 120.01976 * 359.97438 * 23 22 21 25 25 C 1.38338 * 120.00484 * 293.74430 * 20 2 1 26 26 Cl 1.73589 * 120.01473 * 359.97438 * 25 20 2 27 27 H 1.08995 * 109.47443 * 185.60296 * 1 2 3 28 28 H 1.09005 * 109.46957 * 305.60332 * 1 2 3 29 29 H 1.08996 * 109.46847 * 65.59775 * 1 2 3 30 30 H 0.97003 * 120.00164 * 355.98882 * 5 2 1 31 31 H 1.07998 * 119.83887 * 0.02562 * 7 6 5 32 32 H 1.08000 * 120.03548 * 180.30222 * 9 8 7 33 33 H 0.97001 * 120.00024 * 180.02562 * 14 13 11 34 34 H 1.07996 * 119.99334 * 0.02562 * 21 20 2 35 35 H 1.07995 * 119.98721 * 180.02562 * 22 21 20 36 36 H 1.08001 * 119.98951 * 179.97438 * 23 22 21 37 37 H 1.07991 * 120.01188 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0207 1.3878 0.0000 4 7 2.3994 2.4589 -0.0011 5 7 2.0183 -0.6906 -1.1961 6 6 3.3805 -0.7453 -1.4586 7 6 4.2828 -0.0936 -0.6100 8 7 5.5805 -0.1407 -0.8537 9 6 6.0378 -0.8083 -1.8957 10 6 5.1402 -1.4625 -2.7591 11 6 5.6243 -2.1732 -3.8801 12 1 4.9764 -2.3555 -4.7248 13 6 6.9442 -2.6412 -3.8961 14 7 7.6126 -2.7500 -2.7778 15 14 7.7494 -3.1099 -5.5151 16 1 7.6031 -4.5711 -5.7360 17 1 7.0941 -2.3733 -6.6255 18 1 9.1915 -2.7580 -5.4708 19 7 3.8243 -1.4127 -2.5104 20 6 2.0324 -0.7103 1.2305 21 6 2.7221 -1.9020 1.1077 22 6 3.1834 -2.5533 2.2362 23 6 2.9544 -2.0139 3.4885 24 6 2.2646 -0.8229 3.6127 25 6 1.8082 -0.1671 2.4829 26 17 0.9488 1.3332 2.6374 27 1 -0.3634 -1.0227 0.1003 28 1 -0.3633 0.5983 0.8356 29 1 -0.3633 0.4246 -0.9358 30 1 1.3899 -1.1099 -1.8046 31 1 3.9165 0.4504 0.2480 32 1 7.0997 -0.8483 -2.0885 33 1 8.5269 -3.0738 -2.7889 34 1 2.9014 -2.3237 0.1298 35 1 3.7226 -3.4841 2.1397 36 1 3.3147 -2.5236 4.3699 37 1 2.0862 -0.4015 4.5908 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158483087.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:08 Heat of formation + Delta-G solvation = 88.140828 kcal Electronic energy + Delta-G solvation = -25132.897748 eV Core-core repulsion = 21514.795255 eV Total energy + Delta-G solvation = -3618.102493 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.079 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.86550 -40.45256 -38.57613 -37.59255 -36.73332 -35.91715 -34.51359 -33.00793 -31.74389 -31.08796 -29.70106 -27.92765 -25.89482 -24.10748 -23.93044 -23.45907 -22.78854 -19.93338 -19.22244 -18.51266 -18.02690 -17.39286 -17.14351 -16.87873 -16.36712 -15.94801 -15.61278 -15.33344 -15.18911 -14.82104 -14.75314 -14.56709 -14.22054 -13.99121 -13.66723 -13.44059 -13.24525 -13.16192 -13.04376 -12.84367 -12.70086 -12.53259 -12.43121 -12.29376 -12.03435 -11.94673 -11.77238 -11.60225 -11.36352 -10.57052 -9.95194 -9.75051 -9.37684 -8.87677 -8.76143 -6.67190 0.03672 0.23431 0.66905 0.99671 1.03593 1.35074 1.42380 1.53092 1.60290 1.60966 2.17155 2.35619 2.47296 2.63000 2.80328 3.34382 3.70225 3.73537 3.82154 4.08769 4.11705 4.24873 4.33126 4.39982 4.45264 4.56025 4.62644 4.72543 4.86452 4.93956 5.00496 5.07911 5.13019 5.18615 5.31725 5.46395 5.65407 5.78053 5.89700 6.21783 6.33012 6.43283 6.55775 6.78891 7.32911 7.78538 8.13776 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.020183 B = 0.003782 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.983223 B = 7402.498060 C = 7947.398371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.334 3.666 3 C 0.214 3.786 4 N -0.446 5.446 5 N -0.703 5.703 6 C 0.377 3.623 7 C -0.154 4.154 8 N -0.433 5.433 9 C -0.066 4.066 10 C 0.237 3.763 11 C -0.444 4.444 12 H 0.090 0.910 13 C 0.042 3.958 14 N -0.799 5.799 15 Si 1.000 3.000 16 H -0.256 1.256 17 H -0.257 1.257 18 H -0.261 1.261 19 N -0.593 5.593 20 C -0.103 4.103 21 C -0.083 4.083 22 C -0.122 4.122 23 C -0.090 4.090 24 C -0.110 4.110 25 C -0.034 4.034 26 Cl -0.063 7.063 27 H 0.111 0.889 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.420 0.580 31 H 0.126 0.874 32 H 0.147 0.853 33 H 0.301 0.699 34 H 0.113 0.887 35 H 0.138 0.862 36 H 0.167 0.833 37 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.055 -2.725 9.813 15.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.242 3.758 3 C -0.105 4.105 4 N -0.122 5.122 5 N -0.342 5.342 6 C 0.135 3.865 7 C -0.315 4.315 8 N -0.145 5.145 9 C -0.236 4.236 10 C 0.110 3.890 11 C -0.477 4.477 12 H 0.108 0.892 13 C -0.179 4.179 14 N -0.423 5.423 15 Si 0.819 3.181 16 H -0.180 1.180 17 H -0.180 1.180 18 H -0.185 1.185 19 N -0.321 5.321 20 C -0.106 4.106 21 C -0.101 4.101 22 C -0.140 4.140 23 C -0.108 4.108 24 C -0.128 4.128 25 C -0.061 4.061 26 Cl -0.034 7.034 27 H 0.129 0.871 28 H 0.114 0.886 29 H 0.112 0.888 30 H 0.260 0.740 31 H 0.143 0.857 32 H 0.164 0.836 33 H 0.112 0.888 34 H 0.131 0.869 35 H 0.156 0.844 36 H 0.185 0.815 37 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -11.371 -0.909 10.116 15.247 hybrid contribution 0.367 -0.423 -0.848 1.016 sum -11.004 -1.332 9.268 14.448 Atomic orbital electron populations 1.22296 0.85843 1.06876 1.05944 1.16402 0.97031 0.78445 0.83961 1.29646 0.92701 0.95196 0.92977 1.81100 1.08777 1.14286 1.08068 1.44120 1.02629 1.61048 1.26418 1.19212 0.86125 0.90311 0.90802 1.22224 0.89393 1.14229 1.05647 1.67643 1.15470 1.13862 1.17548 1.23390 1.01095 1.03008 0.96117 1.19342 0.86588 0.89936 0.93152 1.19673 0.97262 1.29762 1.00986 0.89153 1.26986 0.96454 0.92233 1.02199 1.69785 1.12305 1.30113 1.30118 0.84917 0.77655 0.79575 0.75974 1.17979 1.18047 1.18515 1.68458 1.16584 1.26031 1.21061 1.19605 1.02118 0.96699 0.92221 1.21042 0.95246 0.94127 0.99721 1.21510 0.99072 1.00920 0.92514 1.21527 0.96300 0.94744 0.98214 1.21335 0.98070 0.95484 0.97922 1.20824 1.01129 0.89668 0.94478 1.98363 1.75295 1.32020 1.97675 0.87070 0.88626 0.88796 0.74039 0.85668 0.83622 0.88801 0.86877 0.84401 0.81520 0.82049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 8.32 71.98 0.60 -2.21 16 2 C 0.33 9.55 0.75 1.05 0.00 9.55 16 3 C 0.21 7.48 8.42 89.44 0.75 8.24 16 4 N -0.45 -17.61 18.54 20.01 0.37 -17.24 16 5 N -0.70 -23.56 4.48 -316.25 -1.42 -24.98 16 6 C 0.38 17.11 5.51 133.37 0.74 17.84 16 7 C -0.15 -7.58 8.33 85.07 0.71 -6.87 16 8 N -0.43 -23.86 10.47 -192.24 -2.01 -25.88 16 9 C -0.07 -3.74 9.89 85.28 0.84 -2.89 16 10 C 0.24 13.10 6.43 40.16 0.26 13.36 16 11 C -0.44 -23.17 9.29 23.46 0.22 -22.95 16 12 H 0.09 4.57 7.91 -2.91 -0.02 4.55 16 13 C 0.04 1.95 5.14 85.30 0.44 2.39 16 14 N -0.80 -39.08 10.87 21.84 0.24 -38.84 16 15 Si 1.00 35.00 29.60 68.60 2.03 37.03 16 16 H -0.26 -8.46 7.11 99.48 0.71 -7.75 16 17 H -0.26 -8.94 7.11 99.48 0.71 -8.23 16 18 H -0.26 -8.63 7.11 99.48 0.71 -7.92 16 19 N -0.59 -30.41 10.49 -185.99 -1.95 -32.36 16 20 C -0.10 -2.93 3.47 -19.84 -0.07 -3.00 16 21 C -0.08 -2.55 7.79 22.26 0.17 -2.37 16 22 C -0.12 -3.12 10.05 22.27 0.22 -2.89 16 23 C -0.09 -1.78 10.04 22.26 0.22 -1.56 16 24 C -0.11 -2.23 9.83 22.29 0.22 -2.01 16 25 C -0.03 -0.84 6.04 22.33 0.13 -0.71 16 26 Cl -0.06 -1.48 23.92 -2.72 -0.07 -1.54 16 27 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.10 1.68 5.73 -2.38 -0.01 1.66 16 29 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.42 11.99 8.60 -92.71 -0.80 11.20 16 31 H 0.13 5.92 4.56 -2.91 -0.01 5.90 16 32 H 0.15 8.33 6.04 -2.91 -0.02 8.32 16 33 H 0.30 12.97 8.29 -92.71 -0.77 12.20 16 34 H 0.11 4.14 5.75 -2.91 -0.02 4.12 16 35 H 0.14 3.21 8.06 -2.91 -0.02 3.18 16 36 H 0.17 2.10 8.06 -2.91 -0.02 2.07 16 37 H 0.16 2.35 8.06 -2.92 -0.02 2.33 16 Total: -1.00 -68.30 326.34 3.01 -65.28 By element: Atomic # 1 Polarization: 34.26 SS G_CDS: 0.36 Total: 34.62 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: 5.46 Total: 3.91 kcal Atomic # 7 Polarization: -134.52 SS G_CDS: -4.77 Total: -139.29 kcal Atomic # 14 Polarization: 35.00 SS G_CDS: 2.03 Total: 37.03 kcal Atomic # 17 Polarization: -1.48 SS G_CDS: -0.07 Total: -1.54 kcal Total: -68.30 3.01 -65.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158483087.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.425 kcal (2) G-P(sol) polarization free energy of solvation -68.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds