Wall clock time and date at job start Tue Mar 31 2020 15:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30905 * 1 3 3 Si 1.86806 * 119.99965 * 2 1 4 4 H 1.48500 * 109.47022 * 240.00245 * 3 2 1 5 5 H 1.48497 * 109.46693 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.46906 * 120.00269 * 3 2 1 7 7 C 1.39863 * 120.00241 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00662 * 163.25191 * 7 2 1 9 9 C 1.41200 * 119.99887 * 343.24159 * 7 2 1 10 10 C 1.40788 * 120.56316 * 155.70805 * 9 7 2 11 11 N 1.31472 * 120.38804 * 180.02562 * 10 9 7 12 12 C 1.32744 * 121.74285 * 359.97438 * 11 10 9 13 13 N 1.38405 * 119.43769 * 179.97438 * 12 11 10 14 14 C 1.46493 * 120.00146 * 0.02562 * 13 12 11 15 15 C 1.53951 * 113.57835 * 204.99720 * 14 13 12 16 16 C 1.52910 * 86.78365 * 220.66334 * 15 14 13 17 17 C 1.52907 * 88.03976 * 24.90045 * 16 15 14 18 18 C 1.52906 * 121.13968 * 150.62081 * 16 15 14 19 19 C 1.53950 * 86.78143 * 100.81779 * 18 16 15 20 20 F 1.39901 * 113.57563 * 139.33882 * 19 18 16 21 21 F 1.39899 * 113.58198 * 270.05226 * 19 18 16 22 22 C 1.53069 * 121.06969 * 259.16388 * 16 15 14 23 23 C 1.39796 * 121.12111 * 0.26325 * 12 11 10 24 24 Cl 1.73605 * 120.25978 * 179.72008 * 23 12 11 25 25 C 1.36668 * 119.47699 * 359.48212 * 23 12 11 26 26 H 0.96993 * 120.00023 * 0.02562 * 1 2 3 27 27 H 1.08001 * 119.80841 * 0.04686 * 10 9 7 28 28 H 0.97005 * 119.99768 * 180.02562 * 13 12 11 29 29 H 1.08993 * 112.82619 * 336.08902 * 14 13 12 30 30 H 1.09003 * 113.66157 * 106.19408 * 15 14 13 31 31 H 1.09000 * 113.66472 * 335.13667 * 15 14 13 32 32 H 1.09000 * 113.66174 * 89.57314 * 17 16 15 33 33 H 1.09004 * 113.66412 * 220.62593 * 17 16 15 34 34 H 1.09006 * 113.65924 * 346.35003 * 18 16 15 35 35 H 1.08998 * 113.74983 * 215.30910 * 18 16 15 36 36 H 1.09000 * 113.66521 * 144.67224 * 22 16 15 37 37 H 1.09011 * 113.71164 * 13.57315 * 22 16 15 38 38 H 1.07998 * 120.80390 * 180.26365 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6178 0.0000 4 1 3.0968 1.6965 -1.2125 5 1 1.2780 2.7464 -0.0006 6 1 3.0968 1.6964 1.2124 7 6 2.0084 -1.2112 -0.0005 8 1 3.0540 -1.2310 -0.2701 9 6 1.3474 -2.4083 0.3515 10 6 1.8244 -3.6510 -0.1071 11 7 1.2059 -4.7634 0.2224 12 6 0.1230 -4.7593 0.9900 13 7 -0.4907 -5.9587 1.3070 14 6 0.0559 -7.2185 0.7967 15 6 -0.9879 -8.3452 0.6924 16 6 0.0979 -9.2829 1.2216 17 6 0.7568 -8.0667 1.8734 18 6 -0.2591 -10.5231 2.0416 19 6 -0.0439 -11.3326 0.7499 20 9 0.6200 -12.5469 0.9547 21 9 -1.2014 -11.4706 -0.0235 22 6 0.8816 -10.1970 0.2765 23 6 -0.4117 -3.5637 1.4789 24 17 -1.8333 -3.5839 2.4752 25 6 0.1963 -2.3793 1.1703 26 1 -0.4850 0.8400 -0.0004 27 1 2.7036 -3.6908 -0.7330 28 1 -1.2827 -5.9652 1.8670 29 1 0.6472 -7.0866 -0.1094 30 1 -1.2945 -8.5642 -0.3304 31 1 -1.8313 -8.2247 1.3724 32 1 0.4038 -7.8678 2.8853 33 1 1.8439 -8.0631 1.7942 34 1 -1.2899 -10.5312 2.3963 35 1 0.4611 -10.7524 2.8269 36 1 1.9240 -10.3334 0.5642 37 1 0.7610 -9.9451 -0.7772 38 1 -0.1960 -1.4434 1.5398 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160590927.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:21 Heat of formation + Delta-G solvation = -35.833411 kcal Electronic energy + Delta-G solvation = -24830.003989 eV Core-core repulsion = 20755.836383 eV Total energy + Delta-G solvation = -4074.167606 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.085 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.94116 -47.27815 -40.26600 -38.63521 -35.64835 -35.48799 -34.00117 -32.08721 -30.56004 -28.87494 -26.60398 -25.83250 -25.12002 -23.62425 -22.18183 -21.30603 -20.34708 -18.52752 -17.52652 -17.47924 -16.86240 -16.66031 -16.48413 -15.85245 -15.17545 -14.89953 -14.35919 -14.21599 -14.10656 -14.03656 -13.54779 -13.45160 -13.27296 -12.89814 -12.85950 -12.39101 -12.18658 -12.02998 -11.77810 -11.65148 -11.42891 -11.25970 -11.01637 -10.88339 -10.80029 -10.65067 -10.46093 -10.43346 -10.18306 -9.88707 -9.51264 -8.86483 -8.32493 -8.18400 -6.96687 -6.74078 -4.35471 2.46858 2.77045 3.02721 3.04563 3.13964 3.16278 3.31940 3.61386 3.85971 3.95017 4.00730 4.11805 4.31584 4.51320 4.70481 4.89360 5.12557 5.21730 5.24283 5.37583 5.47888 5.51495 5.63038 5.74854 5.77953 5.85893 5.88113 6.09383 6.21480 6.23346 6.52077 6.60105 6.90362 7.04069 7.12846 7.60379 7.64810 8.06066 8.31023 8.37315 8.63490 8.68509 9.47578 10.09112 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.025734 B = 0.002611 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.783545 B =10719.569800 C =11435.485041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.453 4.453 8 H 0.082 0.918 9 C 0.039 3.961 10 C 0.015 3.985 11 N -0.502 5.502 12 C 0.288 3.712 13 N -0.728 5.728 14 C 0.160 3.840 15 C -0.127 4.127 16 C -0.103 4.103 17 C -0.134 4.134 18 C -0.149 4.149 19 C 0.252 3.748 20 F -0.196 7.196 21 F -0.180 7.180 22 C -0.139 4.139 23 C -0.102 4.102 24 Cl -0.115 7.115 25 C -0.089 4.089 26 H 0.283 0.717 27 H 0.134 0.866 28 H 0.397 0.603 29 H 0.112 0.888 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.112 0.888 36 H 0.114 0.886 37 H 0.096 0.904 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.965 -13.870 3.307 14.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.144 4.144 3 Si 0.736 3.264 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.483 4.483 8 H 0.100 0.900 9 C 0.034 3.966 10 C -0.144 4.144 11 N -0.217 5.217 12 C 0.055 3.945 13 N -0.366 5.366 14 C 0.052 3.948 15 C -0.165 4.165 16 C -0.104 4.104 17 C -0.174 4.174 18 C -0.187 4.187 19 C 0.216 3.784 20 F -0.177 7.177 21 F -0.161 7.161 22 C -0.177 4.177 23 C -0.134 4.134 24 Cl -0.087 7.087 25 C -0.116 4.116 26 H 0.094 0.906 27 H 0.152 0.848 28 H 0.233 0.767 29 H 0.130 0.870 30 H 0.094 0.906 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.091 0.909 34 H 0.110 0.890 35 H 0.130 0.870 36 H 0.133 0.867 37 H 0.114 0.886 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.874 -14.593 2.946 14.913 hybrid contribution -0.571 1.383 0.493 1.575 sum -1.445 -13.209 3.439 13.726 Atomic orbital electron populations 1.69780 1.07531 1.29637 1.35441 1.25901 0.94782 1.01441 0.92313 0.86307 0.80059 0.80051 0.80013 1.18937 1.20347 1.18810 1.19309 0.97773 0.90627 1.40611 0.89951 1.18298 0.92562 0.93897 0.91884 1.22350 1.01585 0.87218 1.03272 1.66724 1.07885 1.32229 1.14837 1.17429 0.93356 0.84232 0.99522 1.43756 1.32637 1.01916 1.58309 1.21975 0.93968 0.81766 0.97070 1.23200 0.96700 0.94832 1.01770 1.22055 0.98812 0.92618 0.96920 1.23362 1.00652 0.93413 0.99942 1.23914 1.04859 0.94058 0.95824 1.22220 0.81695 0.80424 0.94073 1.92995 1.80294 1.49077 1.95301 1.93010 1.50152 1.96283 1.76651 1.23835 0.99809 0.91882 1.02155 1.20939 0.92864 0.95268 1.04377 1.98242 1.41667 1.98703 1.70114 1.21310 0.97143 0.95655 0.97451 0.90574 0.84828 0.76734 0.87028 0.90635 0.89362 0.89597 0.90874 0.88967 0.87005 0.86721 0.88552 0.84306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.68 10.91 55.54 0.61 -19.08 16 2 C 0.07 1.73 5.18 -17.34 -0.09 1.64 16 3 Si 0.91 17.78 29.59 -169.99 -5.03 12.75 16 4 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 5 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 6 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 7 C -0.45 -11.16 9.07 -37.85 -0.34 -11.50 16 8 H 0.08 1.92 7.90 -52.49 -0.41 1.50 16 9 C 0.04 0.97 5.59 -106.65 -0.60 0.38 16 10 C 0.01 0.34 10.97 -16.74 -0.18 0.15 16 11 N -0.50 -11.13 9.07 -11.75 -0.11 -11.24 16 12 C 0.29 6.12 7.48 -155.06 -1.16 4.96 16 13 N -0.73 -12.45 5.44 -52.88 -0.29 -12.74 16 14 C 0.16 2.27 4.25 -66.95 -0.28 1.98 16 15 C -0.13 -1.44 7.59 -26.28 -0.20 -1.64 16 16 C -0.10 -1.03 1.10 -154.63 -0.17 -1.20 16 17 C -0.13 -1.58 7.64 -26.28 -0.20 -1.78 16 18 C -0.15 -1.31 7.63 -26.28 -0.20 -1.51 16 19 C 0.25 2.59 3.26 -25.75 -0.08 2.50 16 20 F -0.20 -2.22 17.41 2.25 0.04 -2.18 16 21 F -0.18 -2.14 17.39 2.25 0.04 -2.10 16 22 C -0.14 -1.29 7.64 -26.20 -0.20 -1.50 16 23 C -0.10 -2.28 6.32 -39.57 -0.25 -2.53 16 24 Cl -0.12 -2.18 27.56 -51.86 -1.43 -3.61 16 25 C -0.09 -2.17 8.52 -38.99 -0.33 -2.50 16 26 H 0.28 6.42 8.30 -40.82 -0.34 6.09 16 27 H 0.13 2.83 8.06 -52.49 -0.42 2.41 16 28 H 0.40 6.31 7.33 -40.82 -0.30 6.01 16 29 H 0.11 1.79 7.38 -51.93 -0.38 1.41 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.09 0.94 8.12 -51.93 -0.42 0.52 16 32 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.11 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.11 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.10 0.88 8.14 -51.92 -0.42 0.46 16 38 H 0.14 3.55 6.20 -52.49 -0.33 3.22 16 LS Contribution 341.21 15.07 5.14 5.14 Total: -1.00 -25.89 341.21 -9.68 -35.57 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -4.36 Total: 9.99 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: -4.29 Total: -12.52 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: 0.21 Total: -43.05 kcal Atomic # 9 Polarization: -4.36 SS G_CDS: 0.08 Total: -4.28 kcal Atomic # 14 Polarization: 17.78 SS G_CDS: -5.03 Total: 12.75 kcal Atomic # 17 Polarization: -2.18 SS G_CDS: -1.43 Total: -3.61 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -25.89 -9.68 -35.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160590927.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.260 kcal (2) G-P(sol) polarization free energy of solvation -25.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds