Wall clock time and date at job start Tue Mar 31 2020 15:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30905 * 1 3 3 Si 1.86806 * 119.99965 * 2 1 4 4 H 1.48500 * 109.47022 * 240.00245 * 3 2 1 5 5 H 1.48497 * 109.46693 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.46906 * 120.00269 * 3 2 1 7 7 C 1.39863 * 120.00241 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00662 * 163.25191 * 7 2 1 9 9 C 1.41200 * 119.99887 * 343.24159 * 7 2 1 10 10 C 1.40788 * 120.56316 * 155.70805 * 9 7 2 11 11 N 1.31472 * 120.38804 * 180.02562 * 10 9 7 12 12 C 1.32744 * 121.74285 * 359.97438 * 11 10 9 13 13 N 1.38405 * 119.43769 * 179.97438 * 12 11 10 14 14 C 1.46493 * 120.00146 * 0.02562 * 13 12 11 15 15 C 1.53951 * 113.57835 * 204.99720 * 14 13 12 16 16 C 1.52910 * 86.78365 * 220.66334 * 15 14 13 17 17 C 1.52907 * 88.03976 * 24.90045 * 16 15 14 18 18 C 1.52906 * 121.13968 * 150.62081 * 16 15 14 19 19 C 1.53950 * 86.78143 * 100.81779 * 18 16 15 20 20 F 1.39901 * 113.57563 * 139.33882 * 19 18 16 21 21 F 1.39899 * 113.58198 * 270.05226 * 19 18 16 22 22 C 1.53069 * 121.06969 * 259.16388 * 16 15 14 23 23 C 1.39796 * 121.12111 * 0.26325 * 12 11 10 24 24 Cl 1.73605 * 120.25978 * 179.72008 * 23 12 11 25 25 C 1.36668 * 119.47699 * 359.48212 * 23 12 11 26 26 H 0.96993 * 120.00023 * 0.02562 * 1 2 3 27 27 H 1.08001 * 119.80841 * 0.04686 * 10 9 7 28 28 H 0.97005 * 119.99768 * 180.02562 * 13 12 11 29 29 H 1.08993 * 112.82619 * 336.08902 * 14 13 12 30 30 H 1.09003 * 113.66157 * 106.19408 * 15 14 13 31 31 H 1.09000 * 113.66472 * 335.13667 * 15 14 13 32 32 H 1.09000 * 113.66174 * 89.57314 * 17 16 15 33 33 H 1.09004 * 113.66412 * 220.62593 * 17 16 15 34 34 H 1.09006 * 113.65924 * 346.35003 * 18 16 15 35 35 H 1.08998 * 113.74983 * 215.30910 * 18 16 15 36 36 H 1.09000 * 113.66521 * 144.67224 * 22 16 15 37 37 H 1.09011 * 113.71164 * 13.57315 * 22 16 15 38 38 H 1.07998 * 120.80390 * 180.26365 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6178 0.0000 4 1 3.0968 1.6965 -1.2125 5 1 1.2780 2.7464 -0.0006 6 1 3.0968 1.6964 1.2124 7 6 2.0084 -1.2112 -0.0005 8 1 3.0540 -1.2310 -0.2701 9 6 1.3474 -2.4083 0.3515 10 6 1.8244 -3.6510 -0.1071 11 7 1.2059 -4.7634 0.2224 12 6 0.1230 -4.7593 0.9900 13 7 -0.4907 -5.9587 1.3070 14 6 0.0559 -7.2185 0.7967 15 6 -0.9879 -8.3452 0.6924 16 6 0.0979 -9.2829 1.2216 17 6 0.7568 -8.0667 1.8734 18 6 -0.2591 -10.5231 2.0416 19 6 -0.0439 -11.3326 0.7499 20 9 0.6200 -12.5469 0.9547 21 9 -1.2014 -11.4706 -0.0235 22 6 0.8816 -10.1970 0.2765 23 6 -0.4117 -3.5637 1.4789 24 17 -1.8333 -3.5839 2.4752 25 6 0.1963 -2.3793 1.1703 26 1 -0.4850 0.8400 -0.0004 27 1 2.7036 -3.6908 -0.7330 28 1 -1.2827 -5.9652 1.8670 29 1 0.6472 -7.0866 -0.1094 30 1 -1.2945 -8.5642 -0.3304 31 1 -1.8313 -8.2247 1.3724 32 1 0.4038 -7.8678 2.8853 33 1 1.8439 -8.0631 1.7942 34 1 -1.2899 -10.5312 2.3963 35 1 0.4611 -10.7524 2.8269 36 1 1.9240 -10.3334 0.5642 37 1 0.7610 -9.9451 -0.7772 38 1 -0.1960 -1.4434 1.5398 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160590927.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:20 Heat of formation + Delta-G solvation = -46.620941 kcal Electronic energy + Delta-G solvation = -24830.471771 eV Core-core repulsion = 20755.836383 eV Total energy + Delta-G solvation = -4074.635388 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.085 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.77626 -48.12497 -41.26686 -40.28143 -37.27551 -36.82253 -35.56260 -33.46289 -32.34134 -30.54734 -27.32179 -26.94403 -26.63927 -24.89621 -23.60072 -22.93187 -21.57818 -19.43084 -19.26731 -18.44910 -18.21705 -17.68834 -17.44427 -17.19503 -16.70734 -15.98929 -15.89210 -15.55032 -15.19497 -14.98988 -14.96209 -14.70785 -14.38886 -14.10883 -13.77751 -13.72882 -13.58230 -13.38162 -13.16811 -12.91964 -12.83957 -12.77776 -12.54433 -12.39226 -12.01746 -11.82496 -11.61385 -11.50085 -11.34946 -11.16229 -11.09523 -10.44427 -10.08205 -9.95443 -8.69154 -8.41624 -6.17314 0.67989 1.01616 1.43499 1.44419 1.53461 1.57449 2.24030 2.54793 2.64468 2.75835 2.88879 3.19711 3.31551 3.37271 3.65292 3.73544 3.98021 4.14315 4.19649 4.40360 4.53217 4.56111 4.59043 4.72064 4.78144 4.81439 4.84596 4.90028 5.03945 5.09663 5.15642 5.20647 5.29261 5.30759 5.49436 5.82686 5.84201 6.36151 6.63526 6.79211 6.86949 6.92216 7.74767 8.35750 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.025734 B = 0.002611 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.783545 B =10719.569800 C =11435.485041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.034 3.966 3 Si 0.981 3.019 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.261 1.261 7 C -0.484 4.484 8 H 0.086 0.914 9 C 0.009 3.991 10 C 0.010 3.990 11 N -0.507 5.507 12 C 0.296 3.704 13 N -0.719 5.719 14 C 0.142 3.858 15 C -0.118 4.118 16 C -0.093 4.093 17 C -0.125 4.125 18 C -0.137 4.137 19 C 0.243 3.757 20 F -0.203 7.203 21 F -0.192 7.192 22 C -0.138 4.138 23 C -0.117 4.117 24 Cl -0.087 7.087 25 C -0.103 4.103 26 H 0.288 0.712 27 H 0.147 0.853 28 H 0.403 0.597 29 H 0.092 0.908 30 H 0.075 0.925 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.071 0.929 34 H 0.102 0.898 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.095 0.905 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.944 -14.997 4.068 15.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.180 4.180 3 Si 0.802 3.198 4 H -0.183 1.183 5 H -0.198 1.198 6 H -0.186 1.186 7 C -0.514 4.514 8 H 0.104 0.896 9 C 0.004 3.996 10 C -0.148 4.148 11 N -0.223 5.223 12 C 0.061 3.939 13 N -0.357 5.357 14 C 0.035 3.965 15 C -0.156 4.156 16 C -0.094 4.094 17 C -0.164 4.164 18 C -0.175 4.175 19 C 0.207 3.793 20 F -0.183 7.183 21 F -0.173 7.173 22 C -0.175 4.175 23 C -0.150 4.150 24 Cl -0.059 7.059 25 C -0.131 4.131 26 H 0.098 0.902 27 H 0.165 0.835 28 H 0.241 0.759 29 H 0.110 0.890 30 H 0.093 0.907 31 H 0.118 0.882 32 H 0.109 0.891 33 H 0.090 0.910 34 H 0.120 0.880 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.114 0.886 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.866 -15.773 3.713 16.227 hybrid contribution -0.668 1.553 0.282 1.714 sum -1.534 -14.220 3.995 14.850 Atomic orbital electron populations 1.69845 1.08906 1.30622 1.36540 1.26692 0.95439 1.04433 0.91433 0.85251 0.78679 0.75777 0.80056 1.18289 1.19784 1.18561 1.19565 0.98175 0.91505 1.42179 0.89602 1.18578 0.93406 0.94774 0.92871 1.22591 1.01965 0.87098 1.03148 1.66816 1.08404 1.31693 1.15397 1.17738 0.92710 0.85453 0.97970 1.43884 1.32419 1.01602 1.57819 1.22222 0.95661 0.81199 0.97368 1.23147 0.96741 0.93472 1.02277 1.21878 0.97893 0.92456 0.97178 1.23246 1.00466 0.93316 0.99358 1.23926 1.06050 0.92083 0.95397 1.22453 0.81527 0.80332 0.94962 1.92982 1.80418 1.49584 1.95364 1.92988 1.50824 1.96341 1.77106 1.23909 1.00467 0.91051 1.02101 1.21024 0.93921 0.95049 1.04964 1.98236 1.39833 1.98670 1.69138 1.21245 0.97775 0.95844 0.98205 0.90176 0.83543 0.75945 0.88981 0.90673 0.88228 0.89077 0.91021 0.87984 0.85236 0.85253 0.88616 0.85948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.03 10.91 21.82 0.24 -41.80 16 2 C 0.03 1.64 5.18 85.22 0.44 2.08 16 3 Si 0.98 36.67 29.59 68.60 2.03 38.70 16 4 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 5 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 6 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 7 C -0.48 -24.42 9.07 23.39 0.21 -24.21 16 8 H 0.09 4.09 7.90 -2.91 -0.02 4.07 16 9 C 0.01 0.48 5.59 -21.18 -0.12 0.36 16 10 C 0.01 0.48 10.97 85.37 0.94 1.42 16 11 N -0.51 -22.53 9.07 -191.08 -1.73 -24.26 16 12 C 0.30 12.49 7.48 133.32 1.00 13.49 16 13 N -0.72 -23.67 5.44 -321.23 -1.75 -25.42 16 14 C 0.14 3.82 4.25 45.63 0.19 4.01 16 15 C -0.12 -2.42 7.59 30.89 0.23 -2.19 16 16 C -0.09 -1.62 1.10 -52.26 -0.06 -1.68 16 17 C -0.12 -2.65 7.64 30.88 0.24 -2.42 16 18 C -0.14 -1.97 7.63 30.88 0.24 -1.74 16 19 C 0.24 4.44 3.26 31.23 0.10 4.54 16 20 F -0.20 -4.18 17.41 44.97 0.78 -3.40 16 21 F -0.19 -4.21 17.39 44.97 0.78 -3.42 16 22 C -0.14 -2.26 7.64 30.94 0.24 -2.02 16 23 C -0.12 -5.22 6.32 22.28 0.14 -5.07 16 24 Cl -0.09 -3.21 27.56 -2.72 -0.07 -3.29 16 25 C -0.10 -5.19 8.52 22.65 0.19 -5.00 16 26 H 0.29 13.31 8.30 -92.71 -0.77 12.54 16 27 H 0.15 6.30 8.06 -2.91 -0.02 6.28 16 28 H 0.40 12.09 7.33 -92.70 -0.68 11.41 16 29 H 0.09 2.89 7.38 -2.39 -0.02 2.87 16 30 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.10 1.84 8.12 -2.39 -0.02 1.82 16 32 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 34 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 35 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 38 H 0.12 6.48 6.20 -2.91 -0.02 6.46 16 Total: -1.00 -56.16 341.21 4.70 -51.46 By element: Atomic # 1 Polarization: 29.42 SS G_CDS: 0.43 Total: 29.85 kcal Atomic # 6 Polarization: -22.41 SS G_CDS: 3.98 Total: -18.42 kcal Atomic # 7 Polarization: -88.24 SS G_CDS: -3.24 Total: -91.48 kcal Atomic # 9 Polarization: -8.39 SS G_CDS: 1.56 Total: -6.82 kcal Atomic # 14 Polarization: 36.67 SS G_CDS: 2.03 Total: 38.70 kcal Atomic # 17 Polarization: -3.21 SS G_CDS: -0.07 Total: -3.29 kcal Total: -56.16 4.70 -51.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160590927.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.837 kcal (2) G-P(sol) polarization free energy of solvation -56.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds