Wall clock time and date at job start Tue Mar 31 2020 15:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30895 * 1 3 3 Si 1.86802 * 119.99978 * 2 1 4 4 H 1.48500 * 109.47048 * 270.00316 * 3 2 1 5 5 H 1.48497 * 109.47031 * 30.00050 * 3 2 1 6 6 H 1.48500 * 109.47150 * 150.00211 * 3 2 1 7 7 C 1.39864 * 120.00342 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00379 * 163.24852 * 7 2 1 9 9 C 1.41196 * 120.00116 * 343.25300 * 7 2 1 10 10 C 1.40789 * 120.56889 * 155.70477 * 9 7 2 11 11 N 1.31467 * 120.39053 * 180.02562 * 10 9 7 12 12 C 1.32746 * 121.74179 * 0.02562 * 11 10 9 13 13 N 1.38413 * 119.43706 * 180.02562 * 12 11 10 14 14 C 1.46497 * 120.00093 * 359.97438 * 13 12 11 15 15 C 1.50695 * 109.47149 * 180.02562 * 14 13 12 16 16 N 1.33407 * 126.27145 * 90.02170 * 15 14 13 17 17 C 1.30902 * 109.87258 * 179.97438 * 16 15 14 18 18 N 1.35033 * 109.37156 * 359.97438 * 17 16 15 19 19 C 1.37066 * 133.12176 * 180.02562 * 18 17 16 20 20 C 1.34670 * 120.56080 * 179.97438 * 19 18 17 21 21 C 1.40814 * 120.61736 * 0.02562 * 20 19 18 22 22 C 1.35876 * 119.76919 * 0.02562 * 21 20 19 23 23 C 1.37992 * 126.27251 * 269.71414 * 15 14 13 24 24 C 1.39795 * 121.12312 * 359.97438 * 12 11 10 25 25 Cl 1.73603 * 120.26088 * 179.74683 * 24 12 11 26 26 C 1.36657 * 119.47574 * 0.02562 * 24 12 11 27 27 H 0.96999 * 120.00069 * 359.97438 * 1 2 3 28 28 H 1.07997 * 119.80684 * 0.05175 * 10 9 7 29 29 H 0.97007 * 119.99601 * 179.97438 * 13 12 11 30 30 H 1.09001 * 109.46787 * 299.99977 * 14 13 12 31 31 H 1.09000 * 109.47413 * 59.99628 * 14 13 12 32 32 H 1.08000 * 125.31551 * 180.02562 * 17 16 15 33 33 H 1.08005 * 119.71559 * 359.97438 * 19 18 17 34 34 H 1.07997 * 119.68874 * 179.97438 * 20 19 18 35 35 H 1.07995 * 120.11117 * 179.97438 * 21 20 19 36 36 H 1.08001 * 120.40721 * 179.97438 * 22 21 20 37 37 H 1.08005 * 120.80223 * 179.97438 * 26 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 2.4904 2.0465 -1.4001 5 1 1.4404 2.6526 0.7000 6 1 3.5405 1.4402 0.7000 7 6 2.0083 -1.2112 -0.0005 8 1 3.0540 -1.2309 -0.2701 9 6 1.3474 -2.4083 0.3513 10 6 1.8243 -3.6510 -0.1074 11 7 1.2059 -4.7634 0.2219 12 6 0.1222 -4.7593 0.9886 13 7 -0.4908 -5.9589 1.3063 14 6 0.0565 -7.2187 0.7969 15 6 -0.7893 -8.3671 1.2835 16 7 -1.8512 -8.8837 0.6627 17 6 -2.3430 -9.8702 1.3688 18 7 -1.6059 -10.0304 2.4887 19 6 -1.6847 -10.8993 3.5459 20 6 -0.7940 -10.8338 4.5539 21 6 0.2341 -9.8717 4.5411 22 6 0.3296 -9.0001 3.5031 23 6 -0.6039 -9.0807 2.4499 24 6 -0.4097 -3.5641 1.4815 25 17 -1.8317 -3.5843 2.4770 26 6 0.1953 -2.3794 1.1687 27 1 -0.4850 0.8400 0.0004 28 1 2.7037 -3.6907 -0.7331 29 1 -1.2829 -5.9654 1.8663 30 1 0.0533 -7.2018 -0.2930 31 1 1.0784 -7.3422 1.1553 32 1 -3.2035 -10.4638 1.0975 33 1 -2.4677 -11.6427 3.5706 34 1 -0.8695 -11.5252 5.3801 35 1 0.9437 -9.8262 5.3539 36 1 1.1138 -8.2578 3.4830 37 1 -0.1976 -1.4434 1.5376 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161687109.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:28 Heat of formation + Delta-G solvation = 114.550897 kcal Electronic energy + Delta-G solvation = -23760.918864 eV Core-core repulsion = 20143.961597 eV Total energy + Delta-G solvation = -3616.957267 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.079 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.88146 -38.68121 -37.61416 -35.54221 -35.33855 -33.90455 -32.98595 -31.00638 -30.46551 -29.89276 -28.25839 -25.84432 -24.34135 -23.98695 -22.62632 -21.91495 -21.04742 -20.37035 -17.84787 -17.39751 -16.98995 -16.58315 -16.03819 -15.85410 -15.62360 -14.91423 -14.77639 -14.55384 -14.23324 -13.62784 -13.53738 -13.07661 -12.65955 -12.43095 -12.19655 -12.05753 -11.96358 -11.79248 -11.67755 -11.38457 -11.15715 -10.91610 -10.78233 -10.68160 -10.36606 -10.22967 -9.80828 -9.45983 -9.44045 -8.77033 -8.25903 -8.09317 -7.57156 -6.87392 -6.63615 -4.26533 0.62039 1.09002 2.46988 2.55980 2.84365 2.92387 3.07966 3.11390 3.21243 3.22552 3.26223 3.92609 4.20191 4.34221 4.51695 4.54559 4.61166 4.63174 4.82534 4.89058 5.24910 5.44403 5.57335 5.61049 5.83484 6.00445 6.03915 6.09478 6.24212 6.39552 6.43547 6.54854 6.67864 6.98468 7.05174 7.11492 7.20079 7.68814 7.73528 7.86165 8.15121 8.40408 8.48239 8.72580 8.77014 9.57791 10.17302 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.024649 B = 0.002705 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.695031 B =10349.486035 C =10503.618186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.073 3.927 3 Si 0.910 3.090 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.453 4.453 8 H 0.082 0.918 9 C 0.037 3.963 10 C 0.017 3.983 11 N -0.504 5.504 12 C 0.295 3.705 13 N -0.735 5.735 14 C 0.235 3.765 15 C 0.008 3.992 16 N -0.438 5.438 17 C 0.137 3.863 18 N -0.369 5.369 19 C 0.041 3.959 20 C -0.130 4.130 21 C -0.135 4.135 22 C -0.058 4.058 23 C 0.010 3.990 24 C -0.103 4.103 25 Cl -0.116 7.116 26 C -0.087 4.087 27 H 0.282 0.718 28 H 0.135 0.865 29 H 0.397 0.603 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.210 0.790 33 H 0.163 0.837 34 H 0.145 0.855 35 H 0.136 0.864 36 H 0.148 0.852 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.669 -17.267 8.814 19.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.144 4.144 3 Si 0.734 3.266 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.483 4.483 8 H 0.100 0.900 9 C 0.031 3.969 10 C -0.142 4.142 11 N -0.219 5.219 12 C 0.061 3.939 13 N -0.376 5.376 14 C 0.110 3.890 15 C -0.129 4.129 16 N -0.152 5.152 17 C -0.138 4.138 18 N -0.040 5.040 19 C -0.078 4.078 20 C -0.151 4.151 21 C -0.156 4.156 22 C -0.078 4.078 23 C -0.099 4.099 24 C -0.136 4.136 25 Cl -0.088 7.088 26 C -0.114 4.114 27 H 0.093 0.907 28 H 0.152 0.848 29 H 0.233 0.767 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.227 0.773 33 H 0.180 0.820 34 H 0.163 0.837 35 H 0.154 0.846 36 H 0.166 0.834 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -3.006 -17.817 7.664 19.627 hybrid contribution -0.386 1.195 1.331 1.830 sum -3.392 -16.622 8.995 19.201 Atomic orbital electron populations 1.69794 1.07512 1.29409 1.35812 1.25889 0.94758 1.01378 0.92410 0.86286 0.80536 0.80568 0.79211 1.19507 1.20176 1.18469 1.19305 0.97727 0.90601 1.40717 0.89986 1.18296 0.92618 0.93904 0.92055 1.22355 1.01549 0.87176 1.03083 1.66770 1.07947 1.32294 1.14925 1.17405 0.93231 0.84023 0.99211 1.43761 1.33112 1.01648 1.59081 1.18970 0.93030 0.78455 0.98564 1.21208 0.97963 1.01100 0.92594 1.69961 1.09011 1.07365 1.28818 1.24906 1.01865 1.02206 0.84803 1.42940 1.21711 1.23168 1.16216 1.21584 1.02361 0.95877 0.88026 1.20821 0.95402 1.00474 0.98439 1.21031 0.99296 0.95958 0.99328 1.20659 0.97134 0.98873 0.91111 1.19479 0.94646 0.95936 0.99852 1.20913 0.92922 0.95196 1.04533 1.98240 1.41687 1.98705 1.70164 1.21297 0.97153 0.95548 0.97387 0.90721 0.84796 0.76731 0.91321 0.91681 0.77316 0.81997 0.83696 0.84635 0.83424 0.84300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.31 10.91 55.54 0.61 -19.70 16 2 C 0.07 1.77 5.18 -17.34 -0.09 1.68 16 3 Si 0.91 18.25 29.59 -169.99 -5.03 13.22 16 4 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 6 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 7 C -0.45 -11.48 9.07 -37.85 -0.34 -11.82 16 8 H 0.08 1.97 7.90 -52.49 -0.41 1.55 16 9 C 0.04 0.95 5.59 -106.65 -0.60 0.35 16 10 C 0.02 0.41 10.97 -16.74 -0.18 0.23 16 11 N -0.50 -11.90 9.52 -11.75 -0.11 -12.02 16 12 C 0.29 6.76 7.48 -155.05 -1.16 5.60 16 13 N -0.73 -14.51 5.63 -61.50 -0.35 -14.86 16 14 C 0.24 4.15 6.21 -5.20 -0.03 4.12 16 15 C 0.01 0.12 6.58 -82.00 -0.54 -0.42 16 16 N -0.44 -6.91 11.19 -10.19 -0.11 -7.02 16 17 C 0.14 1.64 12.75 -90.05 -1.15 0.49 16 18 N -0.37 -4.21 2.94 -62.43 -0.18 -4.39 16 19 C 0.04 0.33 10.97 -16.48 -0.18 0.15 16 20 C -0.13 -0.94 9.97 -39.87 -0.40 -1.33 16 21 C -0.14 -1.18 10.07 -39.45 -0.40 -1.58 16 22 C -0.06 -0.66 10.10 -39.39 -0.40 -1.06 16 23 C 0.01 0.13 6.74 -84.09 -0.57 -0.43 16 24 C -0.10 -2.44 6.32 -39.57 -0.25 -2.69 16 25 Cl -0.12 -2.37 27.56 -51.86 -1.43 -3.80 16 26 C -0.09 -2.21 8.52 -38.99 -0.33 -2.54 16 27 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 28 H 0.13 2.96 8.06 -52.49 -0.42 2.53 16 29 H 0.40 7.66 7.07 -40.82 -0.29 7.37 16 30 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.21 1.57 8.06 -52.49 -0.42 1.15 16 33 H 0.16 0.67 8.06 -52.48 -0.42 0.25 16 34 H 0.15 0.57 8.06 -52.49 -0.42 0.15 16 35 H 0.14 0.86 8.06 -52.49 -0.42 0.43 16 36 H 0.15 1.60 8.06 -52.49 -0.42 1.18 16 37 H 0.14 3.67 6.20 -52.48 -0.33 3.34 16 LS Contribution 339.28 15.07 5.11 5.11 Total: -1.00 -30.09 339.28 -11.66 -41.75 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -3.55 Total: 10.96 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -6.61 Total: -9.25 kcal Atomic # 7 Polarization: -57.83 SS G_CDS: -0.15 Total: -57.98 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.22 kcal Atomic # 17 Polarization: -2.37 SS G_CDS: -1.43 Total: -3.80 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.09 -11.66 -41.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161687109.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.299 kcal (2) G-P(sol) polarization free energy of solvation -30.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds