Wall clock time and date at job start Tue Mar 31 2020 15:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30895 * 1 3 3 Si 1.86802 * 119.99978 * 2 1 4 4 H 1.48500 * 109.47048 * 270.00316 * 3 2 1 5 5 H 1.48497 * 109.47031 * 30.00050 * 3 2 1 6 6 H 1.48500 * 109.47150 * 150.00211 * 3 2 1 7 7 C 1.39864 * 120.00342 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00379 * 163.24852 * 7 2 1 9 9 C 1.41196 * 120.00116 * 343.25300 * 7 2 1 10 10 C 1.40789 * 120.56889 * 155.70477 * 9 7 2 11 11 N 1.31467 * 120.39053 * 180.02562 * 10 9 7 12 12 C 1.32746 * 121.74179 * 0.02562 * 11 10 9 13 13 N 1.38413 * 119.43706 * 180.02562 * 12 11 10 14 14 C 1.46497 * 120.00093 * 359.97438 * 13 12 11 15 15 C 1.50695 * 109.47149 * 180.02562 * 14 13 12 16 16 N 1.33407 * 126.27145 * 90.02170 * 15 14 13 17 17 C 1.30902 * 109.87258 * 179.97438 * 16 15 14 18 18 N 1.35033 * 109.37156 * 359.97438 * 17 16 15 19 19 C 1.37066 * 133.12176 * 180.02562 * 18 17 16 20 20 C 1.34670 * 120.56080 * 179.97438 * 19 18 17 21 21 C 1.40814 * 120.61736 * 0.02562 * 20 19 18 22 22 C 1.35876 * 119.76919 * 0.02562 * 21 20 19 23 23 C 1.37992 * 126.27251 * 269.71414 * 15 14 13 24 24 C 1.39795 * 121.12312 * 359.97438 * 12 11 10 25 25 Cl 1.73603 * 120.26088 * 179.74683 * 24 12 11 26 26 C 1.36657 * 119.47574 * 0.02562 * 24 12 11 27 27 H 0.96999 * 120.00069 * 359.97438 * 1 2 3 28 28 H 1.07997 * 119.80684 * 0.05175 * 10 9 7 29 29 H 0.97007 * 119.99601 * 179.97438 * 13 12 11 30 30 H 1.09001 * 109.46787 * 299.99977 * 14 13 12 31 31 H 1.09000 * 109.47413 * 59.99628 * 14 13 12 32 32 H 1.08000 * 125.31551 * 180.02562 * 17 16 15 33 33 H 1.08005 * 119.71559 * 359.97438 * 19 18 17 34 34 H 1.07997 * 119.68874 * 179.97438 * 20 19 18 35 35 H 1.07995 * 120.11117 * 179.97438 * 21 20 19 36 36 H 1.08001 * 120.40721 * 179.97438 * 22 21 20 37 37 H 1.08005 * 120.80223 * 179.97438 * 26 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 2.4904 2.0465 -1.4001 5 1 1.4404 2.6526 0.7000 6 1 3.5405 1.4402 0.7000 7 6 2.0083 -1.2112 -0.0005 8 1 3.0540 -1.2309 -0.2701 9 6 1.3474 -2.4083 0.3513 10 6 1.8243 -3.6510 -0.1074 11 7 1.2059 -4.7634 0.2219 12 6 0.1222 -4.7593 0.9886 13 7 -0.4908 -5.9589 1.3063 14 6 0.0565 -7.2187 0.7969 15 6 -0.7893 -8.3671 1.2835 16 7 -1.8512 -8.8837 0.6627 17 6 -2.3430 -9.8702 1.3688 18 7 -1.6059 -10.0304 2.4887 19 6 -1.6847 -10.8993 3.5459 20 6 -0.7940 -10.8338 4.5539 21 6 0.2341 -9.8717 4.5411 22 6 0.3296 -9.0001 3.5031 23 6 -0.6039 -9.0807 2.4499 24 6 -0.4097 -3.5641 1.4815 25 17 -1.8317 -3.5843 2.4770 26 6 0.1953 -2.3794 1.1687 27 1 -0.4850 0.8400 0.0004 28 1 2.7037 -3.6907 -0.7331 29 1 -1.2829 -5.9654 1.8663 30 1 0.0533 -7.2018 -0.2930 31 1 1.0784 -7.3422 1.1553 32 1 -3.2035 -10.4638 1.0975 33 1 -2.4677 -11.6427 3.5706 34 1 -0.8695 -11.5252 5.3801 35 1 0.9437 -9.8262 5.3539 36 1 1.1138 -8.2578 3.4830 37 1 -0.1976 -1.4434 1.5376 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161687109.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:27 Heat of formation + Delta-G solvation = 99.719127 kcal Electronic energy + Delta-G solvation = -23761.562018 eV Core-core repulsion = 20143.961597 eV Total energy + Delta-G solvation = -3617.600420 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.079 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.76840 -40.52117 -38.43870 -37.30839 -36.92836 -35.48254 -34.17147 -32.36106 -31.84699 -31.43935 -29.59454 -27.25480 -26.01094 -24.73082 -23.73342 -23.40513 -22.84084 -21.52314 -19.29644 -18.82560 -18.23562 -17.72050 -17.43558 -16.92041 -16.62341 -16.54854 -15.97760 -15.72003 -15.50844 -15.13609 -15.05252 -14.74716 -14.05618 -13.86847 -13.60563 -13.49641 -13.16755 -13.07503 -12.90951 -12.81993 -12.67726 -12.48983 -12.41178 -12.01803 -11.65616 -11.62087 -11.32566 -11.17763 -10.53922 -10.27519 -10.13555 -9.98239 -8.70625 -8.45562 -8.42765 -6.17649 -0.11876 0.28419 0.66606 1.00361 1.41920 1.44011 1.53489 1.59638 1.68341 1.88520 2.24884 2.45396 2.75443 2.88183 3.45060 3.56753 3.65968 3.86016 3.89927 4.00080 4.16033 4.23423 4.34867 4.48958 4.66082 4.76244 4.78541 4.90598 4.98601 5.09949 5.16676 5.25419 5.31836 5.36217 5.45385 5.65810 5.80129 5.81325 6.28660 6.33409 6.58263 6.73606 6.84591 6.89125 6.90852 7.71810 8.36426 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.024649 B = 0.002705 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.695031 B =10349.486035 C =10503.618186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.033 3.967 3 Si 0.984 3.016 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.256 1.256 7 C -0.481 4.481 8 H 0.088 0.912 9 C 0.010 3.990 10 C 0.012 3.988 11 N -0.511 5.511 12 C 0.295 3.705 13 N -0.725 5.725 14 C 0.247 3.753 15 C -0.044 4.044 16 N -0.480 5.480 17 C 0.140 3.860 18 N -0.370 5.370 19 C 0.043 3.957 20 C -0.134 4.134 21 C -0.106 4.106 22 C -0.107 4.107 23 C 0.016 3.984 24 C -0.115 4.115 25 Cl -0.090 7.090 26 C -0.101 4.101 27 H 0.288 0.712 28 H 0.150 0.850 29 H 0.399 0.601 30 H 0.044 0.956 31 H 0.064 0.936 32 H 0.251 0.749 33 H 0.207 0.793 34 H 0.189 0.811 35 H 0.163 0.837 36 H 0.139 0.861 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.182 -19.389 10.921 22.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.181 4.181 3 Si 0.805 3.195 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.180 1.180 7 C -0.511 4.511 8 H 0.106 0.894 9 C 0.005 3.995 10 C -0.146 4.146 11 N -0.227 5.227 12 C 0.060 3.940 13 N -0.365 5.365 14 C 0.122 3.878 15 C -0.178 4.178 16 N -0.194 5.194 17 C -0.135 4.135 18 N -0.041 5.041 19 C -0.076 4.076 20 C -0.154 4.154 21 C -0.127 4.127 22 C -0.126 4.126 23 C -0.095 4.095 24 C -0.148 4.148 25 Cl -0.062 7.062 26 C -0.129 4.129 27 H 0.099 0.901 28 H 0.168 0.832 29 H 0.235 0.765 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.266 0.734 33 H 0.224 0.776 34 H 0.206 0.794 35 H 0.180 0.820 36 H 0.157 0.843 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.526 -19.971 9.772 22.511 hybrid contribution -0.324 1.574 0.857 1.821 sum -3.850 -18.397 10.629 21.592 Atomic orbital electron populations 1.69859 1.09025 1.30629 1.36429 1.26746 0.95445 1.04591 0.91366 0.85168 0.79096 0.75869 0.79391 1.18830 1.19587 1.17977 1.19586 0.98206 0.91351 1.41976 0.89391 1.18593 0.93309 0.94801 0.92827 1.22635 1.01992 0.86973 1.03044 1.66839 1.08393 1.32106 1.15371 1.17681 0.92913 0.85042 0.98342 1.43888 1.32689 1.01548 1.58411 1.18767 0.93635 0.78520 0.96918 1.20746 0.99714 1.02447 0.94854 1.69810 1.09736 1.09258 1.30624 1.25593 1.02238 1.01370 0.84344 1.43152 1.20836 1.23159 1.16974 1.22511 1.03307 0.95263 0.86528 1.21388 0.94184 1.00405 0.99405 1.21532 0.99055 0.93940 0.98140 1.20726 0.98131 1.01284 0.92509 1.19555 0.95144 0.95635 0.99185 1.20983 0.93860 0.94952 1.04989 1.98230 1.40021 1.98673 1.69275 1.21233 0.97826 0.95586 0.98207 0.90143 0.83232 0.76510 0.93768 0.91787 0.73364 0.77601 0.79423 0.81958 0.84274 0.85666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.31 10.91 21.81 0.24 -43.08 16 2 C 0.03 1.61 5.18 85.23 0.44 2.05 16 3 Si 0.98 37.56 29.59 68.60 2.03 39.59 16 4 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 5 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 6 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 7 C -0.48 -25.00 9.07 23.39 0.21 -24.79 16 8 H 0.09 4.30 7.90 -2.91 -0.02 4.28 16 9 C 0.01 0.55 5.59 -21.18 -0.12 0.44 16 10 C 0.01 0.60 10.97 85.37 0.94 1.54 16 11 N -0.51 -25.04 9.52 -191.08 -1.82 -26.86 16 12 C 0.29 14.02 7.48 133.32 1.00 15.01 16 13 N -0.73 -29.83 5.63 -348.48 -1.96 -31.79 16 14 C 0.25 9.24 6.21 85.63 0.53 9.77 16 15 C -0.04 -1.44 6.58 42.26 0.28 -1.17 16 16 N -0.48 -15.41 11.19 -186.14 -2.08 -17.49 16 17 C 0.14 3.12 12.75 180.15 2.30 5.42 16 18 N -0.37 -7.62 2.94 -351.44 -1.03 -8.65 16 19 C 0.04 0.48 10.97 83.06 0.91 1.40 16 20 C -0.13 -1.26 9.97 22.08 0.22 -1.04 16 21 C -0.11 -1.50 10.07 22.35 0.23 -1.27 16 22 C -0.11 -2.36 10.10 22.39 0.23 -2.14 16 23 C 0.02 0.42 6.74 38.76 0.26 0.69 16 24 C -0.12 -5.60 6.32 22.28 0.14 -5.46 16 25 Cl -0.09 -3.73 27.56 -2.72 -0.07 -3.81 16 26 C -0.10 -5.36 8.52 22.65 0.19 -5.17 16 27 H 0.29 13.66 8.30 -92.71 -0.77 12.89 16 28 H 0.15 6.79 8.06 -2.91 -0.02 6.77 16 29 H 0.40 15.89 7.07 -92.70 -0.66 15.24 16 30 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.25 2.98 8.06 -2.91 -0.02 2.96 16 33 H 0.21 0.43 8.06 -2.91 -0.02 0.41 16 34 H 0.19 0.22 8.06 -2.91 -0.02 0.20 16 35 H 0.16 1.39 8.06 -2.91 -0.02 1.37 16 36 H 0.14 3.16 8.06 -2.91 -0.02 3.14 16 37 H 0.13 6.90 6.20 -2.91 -0.02 6.88 16 Total: -1.00 -69.21 339.28 3.52 -65.69 By element: Atomic # 1 Polarization: 30.66 SS G_CDS: 0.48 Total: 31.13 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: 7.75 Total: -4.73 kcal Atomic # 7 Polarization: -121.21 SS G_CDS: -6.66 Total: -127.87 kcal Atomic # 14 Polarization: 37.56 SS G_CDS: 2.03 Total: 39.59 kcal Atomic # 17 Polarization: -3.73 SS G_CDS: -0.07 Total: -3.81 kcal Total: -69.21 3.52 -65.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161687109.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.406 kcal (2) G-P(sol) polarization free energy of solvation -69.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds