Wall clock time and date at job start Tue Mar 31 2020 15:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39584 * 120.48065 * 293.80233 * 3 2 1 5 5 N 1.31661 * 120.65804 * 179.76594 * 4 3 2 6 6 C 1.32545 * 121.79476 * 0.52227 * 5 4 3 7 7 N 1.38650 * 119.54661 * 179.75270 * 6 5 4 8 8 C 1.46900 * 110.99916 * 299.96101 * 7 6 5 9 9 C 1.50696 * 109.47292 * 203.06665 * 8 7 6 10 10 H 1.08008 * 119.99726 * 359.97438 * 9 8 7 11 11 C 1.37882 * 120.00376 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99995 * 179.97438 * 11 9 8 13 13 Si 1.86801 * 119.99544 * 359.97438 * 11 9 8 14 14 H 1.48496 * 109.46992 * 90.00643 * 13 11 9 15 15 H 1.48504 * 109.46698 * 210.00197 * 13 11 9 16 16 H 1.48499 * 109.47090 * 329.99846 * 13 11 9 17 17 C 1.46906 * 110.99820 * 63.91377 * 7 6 5 18 18 C 1.50700 * 109.46733 * 170.00463 * 17 7 6 19 19 C 1.38665 * 120.42398 * 89.99829 * 18 17 7 20 20 C 1.38630 * 118.42410 * 180.26867 * 19 18 17 21 21 C 1.38224 * 119.15986 * 359.52826 * 20 19 18 22 22 N 1.31855 * 120.76334 * 0.48410 * 21 20 19 23 23 C 1.31886 * 121.72598 * 359.74165 * 22 21 20 24 24 C 1.39440 * 120.90692 * 359.47033 * 6 5 4 25 25 Cl 1.73602 * 120.38246 * 180.27979 * 24 6 5 26 26 C 1.37987 * 119.24114 * 0.25975 * 24 6 5 27 27 H 1.07994 * 119.67176 * 0.03374 * 4 3 2 28 28 H 1.09001 * 109.47319 * 323.06422 * 8 7 6 29 29 H 1.08999 * 109.47485 * 83.06399 * 8 7 6 30 30 H 0.96992 * 119.99729 * 179.97438 * 12 11 9 31 31 H 1.08991 * 109.47404 * 50.00137 * 17 7 6 32 32 H 1.09000 * 109.47122 * 289.99760 * 17 7 6 33 33 H 1.08006 * 120.78568 * 359.97438 * 19 18 17 34 34 H 1.07996 * 120.42026 * 179.74328 * 20 19 18 35 35 H 1.08004 * 119.62177 * 180.22429 * 21 20 19 36 36 H 1.07998 * 119.62068 * 180.02562 * 23 22 21 37 37 H 1.08002 * 120.82280 * 179.97438 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2763 -0.4845 1.1006 5 7 4.5929 -0.4898 1.1025 6 6 5.2945 -0.0307 0.0760 7 7 6.6798 -0.0538 0.1297 8 6 7.1762 0.7430 1.2595 9 6 8.5955 1.1704 0.9877 10 1 9.0805 0.8788 0.0677 11 6 9.2754 1.9328 1.9138 12 7 10.5142 2.3053 1.6767 13 14 8.4368 2.4365 3.5052 14 1 8.6834 1.4035 4.5431 15 1 8.9848 3.7386 3.9628 16 1 6.9757 2.5679 3.2747 17 6 7.1810 -1.4331 0.1977 18 6 8.6760 -1.4341 0.0078 19 6 9.5227 -1.3217 1.1003 20 6 10.8909 -1.3215 0.8774 21 6 11.3626 -1.4424 -0.4162 22 7 10.5279 -1.5474 -1.4314 23 6 9.2205 -1.5466 -1.2573 24 6 4.6587 0.4698 -1.0596 25 17 5.5912 1.0610 -2.3993 26 6 3.2798 0.4894 -1.1065 27 1 2.7390 -0.8633 1.9574 28 1 6.5488 1.6255 1.3852 29 1 7.1453 0.1428 2.1689 30 1 10.9923 2.8419 2.3281 31 1 6.7147 -2.0283 -0.5872 32 1 6.9381 -1.8604 1.1706 33 1 9.1254 -1.2317 2.1006 34 1 11.5796 -1.2316 1.7044 35 1 12.4273 -1.4468 -0.5980 36 1 8.5680 -1.6349 -2.1132 37 1 2.7609 0.8718 -1.9732 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164004249.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:22 Heat of formation + Delta-G solvation = 122.748910 kcal Electronic energy + Delta-G solvation = -24861.402532 eV Core-core repulsion = 21244.800758 eV Total energy + Delta-G solvation = -3616.601774 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.079 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.80725 -39.39831 -37.40288 -36.48576 -36.28601 -32.92935 -32.55415 -32.04430 -30.98000 -30.21111 -28.06404 -25.70658 -24.00749 -23.47194 -22.67291 -21.81619 -20.47660 -19.37824 -17.57818 -17.20097 -16.36635 -16.28303 -15.55267 -15.33130 -15.20034 -14.50518 -14.44578 -14.17418 -13.67726 -13.63938 -13.32207 -13.13769 -12.99097 -12.88881 -12.69923 -12.46100 -12.25223 -12.17751 -11.92102 -11.51798 -11.02036 -10.95820 -10.73706 -10.56649 -10.16771 -9.93392 -9.79869 -9.63648 -8.95119 -8.81564 -8.66243 -8.45866 -8.16504 -8.00877 -6.14778 -4.08782 0.26460 0.83571 1.94489 2.03664 2.26117 2.44760 2.66288 3.17406 3.26920 3.29906 3.51892 3.53990 3.83739 4.30435 4.31770 4.39644 4.66393 4.95404 5.00027 5.14794 5.20427 5.27861 5.41994 5.49663 5.61061 5.75633 5.79167 5.91287 6.03755 6.14721 6.42663 6.53119 6.56721 6.62607 7.02071 7.13014 7.14393 7.37276 7.38914 7.56245 7.61858 7.70708 8.47151 8.79395 8.97958 9.43224 10.95577 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.012471 B = 0.004763 C = 0.004047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.666915 B = 5876.812410 C = 6916.472637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C 0.266 3.734 3 C -0.092 4.092 4 C 0.168 3.832 5 N -0.496 5.496 6 C 0.356 3.644 7 N -0.474 5.474 8 C 0.172 3.828 9 C -0.499 4.499 10 H 0.093 0.907 11 C 0.078 3.922 12 N -0.881 5.881 13 Si 0.859 3.141 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.269 1.269 17 C 0.119 3.881 18 C -0.117 4.117 19 C 0.004 3.996 20 C -0.165 4.165 21 C 0.097 3.903 22 N -0.503 5.503 23 C 0.106 3.894 24 C -0.067 4.067 25 Cl -0.017 7.017 26 C -0.020 4.020 27 H 0.168 0.832 28 H 0.025 0.975 29 H 0.005 0.995 30 H 0.264 0.736 31 H 0.071 0.929 32 H 0.053 0.947 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.949 -7.234 -2.895 11.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.089 5.089 2 C -0.050 4.050 3 C -0.098 4.098 4 C 0.005 3.995 5 N -0.208 5.208 6 C 0.127 3.873 7 N -0.197 5.197 8 C 0.048 3.952 9 C -0.536 4.536 10 H 0.111 0.889 11 C -0.126 4.126 12 N -0.519 5.519 13 Si 0.687 3.313 14 H -0.202 1.202 15 H -0.211 1.211 16 H -0.194 1.194 17 C -0.007 4.007 18 C -0.120 4.120 19 C -0.022 4.022 20 C -0.185 4.185 21 C -0.060 4.060 22 N -0.213 5.213 23 C -0.050 4.050 24 C -0.098 4.098 25 Cl 0.012 6.988 26 C -0.049 4.049 27 H 0.185 0.815 28 H 0.043 0.957 29 H 0.022 0.978 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.139 0.861 34 H 0.138 0.862 35 H 0.157 0.843 36 H 0.157 0.843 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -9.454 -7.250 -3.492 12.415 hybrid contribution -0.942 0.958 1.834 2.274 sum -10.396 -6.292 -1.658 12.264 Atomic orbital electron populations 1.81275 1.11743 1.08686 1.07210 1.25243 0.92046 0.93713 0.94042 1.16875 0.85623 1.09298 0.98029 1.22871 0.89425 0.91644 0.95568 1.68309 1.07876 1.16881 1.27701 1.20385 0.92245 0.87933 0.86774 1.60382 0.99124 1.12480 1.47692 1.20321 0.97469 0.91759 0.85674 1.21079 0.94355 1.31804 1.06412 0.88933 1.24766 0.94693 0.95550 0.97558 1.69873 1.09997 1.36538 1.35494 0.87112 0.80518 0.78681 0.85017 1.20200 1.21139 1.19353 1.20789 0.91794 0.87409 1.00706 1.20178 0.94795 1.02433 0.94588 1.21082 0.92837 0.89670 0.98646 1.21754 0.96111 1.02527 0.98145 1.22393 0.98851 0.96037 0.88740 1.67550 1.04158 1.14452 1.35111 1.22222 0.91137 0.96394 0.95264 1.21591 0.91668 1.03753 0.92828 1.98418 1.72664 1.85855 1.41847 1.21464 0.91773 0.94084 0.97543 0.81493 0.95725 0.97767 0.92614 0.91104 0.92925 0.86121 0.86187 0.84308 0.84315 0.82816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -5.19 18.54 41.84 0.78 -4.42 16 2 C 0.27 2.81 15.37 -22.47 -0.35 2.46 16 3 C -0.09 -0.93 5.75 -106.67 -0.61 -1.54 16 4 C 0.17 1.80 10.91 -17.12 -0.19 1.61 16 5 N -0.50 -7.03 9.85 -12.09 -0.12 -7.15 16 6 C 0.36 5.48 5.12 -155.12 -0.79 4.68 16 7 N -0.47 -8.46 3.84 -175.91 -0.68 -9.14 16 8 C 0.17 3.65 3.35 -4.98 -0.02 3.63 16 9 C -0.50 -12.21 6.44 -34.44 -0.22 -12.43 16 10 H 0.09 2.54 6.35 -52.48 -0.33 2.21 16 11 C 0.08 2.00 5.47 -17.82 -0.10 1.90 16 12 N -0.88 -24.26 13.96 55.43 0.77 -23.49 16 13 Si 0.86 19.73 27.47 -169.99 -4.67 15.06 16 14 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 15 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.27 -6.09 6.54 56.52 0.37 -5.72 16 17 C 0.12 1.92 4.89 -4.97 -0.02 1.90 16 18 C -0.12 -2.10 3.54 -104.48 -0.37 -2.47 16 19 C 0.00 0.08 6.64 -39.28 -0.26 -0.18 16 20 C -0.17 -3.06 10.11 -39.44 -0.40 -3.46 16 21 C 0.10 1.78 11.18 -17.55 -0.20 1.58 16 22 N -0.50 -9.68 10.36 -13.25 -0.14 -9.82 16 23 C 0.11 1.92 10.76 -17.55 -0.19 1.73 16 24 C -0.07 -0.89 6.35 -39.23 -0.25 -1.14 16 25 Cl -0.02 -0.24 28.46 -51.86 -1.48 -1.71 16 26 C -0.02 -0.21 9.69 -38.88 -0.38 -0.58 16 27 H 0.17 1.31 8.06 -52.49 -0.42 0.88 16 28 H 0.02 0.56 6.92 -51.93 -0.36 0.20 16 29 H 0.00 0.10 7.23 -51.93 -0.38 -0.28 16 30 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 31 H 0.07 0.99 8.01 -51.93 -0.42 0.57 16 32 H 0.05 0.83 7.87 -51.93 -0.41 0.42 16 33 H 0.12 2.27 8.00 -52.48 -0.42 1.85 16 34 H 0.12 2.07 8.06 -52.49 -0.42 1.64 16 35 H 0.14 2.18 8.06 -52.48 -0.42 1.76 16 36 H 0.14 2.22 8.06 -52.49 -0.42 1.80 16 37 H 0.15 1.20 8.06 -52.49 -0.42 0.77 16 LS Contribution 341.78 15.07 5.15 5.15 Total: -1.00 -28.88 341.78 -8.31 -37.19 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -3.59 Total: 0.63 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -4.34 Total: -2.30 kcal Atomic # 7 Polarization: -54.63 SS G_CDS: 0.62 Total: -54.02 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -4.67 Total: 15.06 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -1.48 Total: -1.71 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.88 -8.31 -37.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164004249.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.939 kcal (2) G-P(sol) polarization free energy of solvation -28.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds