Wall clock time and date at job start Tue Mar 31 2020 15:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39584 * 120.48065 * 293.80233 * 3 2 1 5 5 N 1.31661 * 120.65804 * 179.76594 * 4 3 2 6 6 C 1.32545 * 121.79476 * 0.52227 * 5 4 3 7 7 N 1.38650 * 119.54661 * 179.75270 * 6 5 4 8 8 C 1.46900 * 110.99916 * 299.96101 * 7 6 5 9 9 C 1.50696 * 109.47292 * 203.06665 * 8 7 6 10 10 H 1.08008 * 119.99726 * 359.97438 * 9 8 7 11 11 C 1.37882 * 120.00376 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99995 * 179.97438 * 11 9 8 13 13 Si 1.86801 * 119.99544 * 359.97438 * 11 9 8 14 14 H 1.48496 * 109.46992 * 90.00643 * 13 11 9 15 15 H 1.48504 * 109.46698 * 210.00197 * 13 11 9 16 16 H 1.48499 * 109.47090 * 329.99846 * 13 11 9 17 17 C 1.46906 * 110.99820 * 63.91377 * 7 6 5 18 18 C 1.50700 * 109.46733 * 170.00463 * 17 7 6 19 19 C 1.38665 * 120.42398 * 89.99829 * 18 17 7 20 20 C 1.38630 * 118.42410 * 180.26867 * 19 18 17 21 21 C 1.38224 * 119.15986 * 359.52826 * 20 19 18 22 22 N 1.31855 * 120.76334 * 0.48410 * 21 20 19 23 23 C 1.31886 * 121.72598 * 359.74165 * 22 21 20 24 24 C 1.39440 * 120.90692 * 359.47033 * 6 5 4 25 25 Cl 1.73602 * 120.38246 * 180.27979 * 24 6 5 26 26 C 1.37987 * 119.24114 * 0.25975 * 24 6 5 27 27 H 1.07994 * 119.67176 * 0.03374 * 4 3 2 28 28 H 1.09001 * 109.47319 * 323.06422 * 8 7 6 29 29 H 1.08999 * 109.47485 * 83.06399 * 8 7 6 30 30 H 0.96992 * 119.99729 * 179.97438 * 12 11 9 31 31 H 1.08991 * 109.47404 * 50.00137 * 17 7 6 32 32 H 1.09000 * 109.47122 * 289.99760 * 17 7 6 33 33 H 1.08006 * 120.78568 * 359.97438 * 19 18 17 34 34 H 1.07996 * 120.42026 * 179.74328 * 20 19 18 35 35 H 1.08004 * 119.62177 * 180.22429 * 21 20 19 36 36 H 1.07998 * 119.62068 * 180.02562 * 23 22 21 37 37 H 1.08002 * 120.82280 * 179.97438 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2763 -0.4845 1.1006 5 7 4.5929 -0.4898 1.1025 6 6 5.2945 -0.0307 0.0760 7 7 6.6798 -0.0538 0.1297 8 6 7.1762 0.7430 1.2595 9 6 8.5955 1.1704 0.9877 10 1 9.0805 0.8788 0.0677 11 6 9.2754 1.9328 1.9138 12 7 10.5142 2.3053 1.6767 13 14 8.4368 2.4365 3.5052 14 1 8.6834 1.4035 4.5431 15 1 8.9848 3.7386 3.9628 16 1 6.9757 2.5679 3.2747 17 6 7.1810 -1.4331 0.1977 18 6 8.6760 -1.4341 0.0078 19 6 9.5227 -1.3217 1.1003 20 6 10.8909 -1.3215 0.8774 21 6 11.3626 -1.4424 -0.4162 22 7 10.5279 -1.5474 -1.4314 23 6 9.2205 -1.5466 -1.2573 24 6 4.6587 0.4698 -1.0596 25 17 5.5912 1.0610 -2.3993 26 6 3.2798 0.4894 -1.1065 27 1 2.7390 -0.8633 1.9574 28 1 6.5488 1.6255 1.3852 29 1 7.1453 0.1428 2.1689 30 1 10.9923 2.8419 2.3281 31 1 6.7147 -2.0283 -0.5872 32 1 6.9381 -1.8604 1.1706 33 1 9.1254 -1.2317 2.1006 34 1 11.5796 -1.2316 1.7044 35 1 12.4273 -1.4468 -0.5980 36 1 8.5680 -1.6349 -2.1132 37 1 2.7609 0.8718 -1.9732 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164004249.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:21 Heat of formation + Delta-G solvation = 106.504722 kcal Electronic energy + Delta-G solvation = -24862.106933 eV Core-core repulsion = 21244.800758 eV Total energy + Delta-G solvation = -3617.306175 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.079 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.87443 -40.78298 -38.56284 -37.56121 -37.33905 -34.63798 -33.77712 -33.29818 -32.36619 -31.51522 -29.67969 -26.98596 -24.96499 -24.82702 -24.12653 -23.33851 -21.89361 -20.30655 -19.16813 -18.26499 -17.80037 -17.71480 -16.97534 -16.73241 -16.18835 -16.05810 -15.60684 -15.33856 -15.04903 -14.65586 -14.55945 -14.36112 -14.31085 -14.15731 -13.98761 -13.81407 -13.66455 -13.57731 -13.15711 -12.96764 -12.73320 -12.35839 -12.01860 -11.98129 -11.89060 -11.54886 -10.88829 -10.85154 -10.73701 -10.14935 -10.10711 -9.88942 -9.59838 -9.40193 -8.12110 -6.07767 -0.70180 -0.06717 0.52042 0.78555 1.05248 1.35151 1.41302 1.45720 1.55889 1.73233 2.40198 2.54280 2.62383 2.71869 3.19485 3.28097 3.39713 3.57641 3.82846 3.83717 4.03393 4.12447 4.19396 4.34467 4.39462 4.43651 4.64041 4.72455 4.74520 4.85232 4.91898 5.05876 5.09452 5.15852 5.54432 5.60583 5.67921 5.88820 6.12545 6.23392 6.28970 6.62003 6.64898 6.96468 7.34078 7.46949 9.00919 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.012471 B = 0.004763 C = 0.004047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.666915 B = 5876.812410 C = 6916.472637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C 0.291 3.709 3 C -0.074 4.074 4 C 0.176 3.824 5 N -0.515 5.515 6 C 0.331 3.669 7 N -0.482 5.482 8 C 0.187 3.813 9 C -0.479 4.479 10 H 0.059 0.941 11 C 0.033 3.967 12 N -0.925 5.925 13 Si 0.911 3.089 14 H -0.268 1.268 15 H -0.293 1.293 16 H -0.261 1.261 17 C 0.123 3.877 18 C -0.117 4.117 19 C -0.011 4.011 20 C -0.174 4.174 21 C 0.085 3.915 22 N -0.519 5.519 23 C 0.098 3.902 24 C -0.075 4.075 25 Cl -0.030 7.030 26 C -0.001 4.001 27 H 0.199 0.801 28 H 0.012 0.988 29 H 0.004 0.996 30 H 0.261 0.739 31 H 0.095 0.905 32 H 0.056 0.944 33 H 0.116 0.884 34 H 0.127 0.873 35 H 0.161 0.839 36 H 0.159 0.841 37 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.491 -7.863 -2.819 14.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.117 5.117 2 C -0.025 4.025 3 C -0.080 4.080 4 C 0.013 3.987 5 N -0.227 5.227 6 C 0.103 3.897 7 N -0.204 5.204 8 C 0.061 3.939 9 C -0.518 4.518 10 H 0.077 0.923 11 C -0.167 4.167 12 N -0.565 5.565 13 Si 0.737 3.263 14 H -0.193 1.193 15 H -0.220 1.220 16 H -0.186 1.186 17 C -0.003 4.003 18 C -0.119 4.119 19 C -0.038 4.038 20 C -0.194 4.194 21 C -0.072 4.072 22 N -0.228 5.228 23 C -0.058 4.058 24 C -0.106 4.106 25 Cl -0.001 7.001 26 C -0.030 4.030 27 H 0.216 0.784 28 H 0.030 0.970 29 H 0.021 0.979 30 H 0.070 0.930 31 H 0.113 0.887 32 H 0.074 0.926 33 H 0.134 0.866 34 H 0.145 0.855 35 H 0.178 0.822 36 H 0.176 0.824 37 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -12.022 -7.900 -3.422 14.787 hybrid contribution -0.262 1.081 1.737 2.063 sum -12.285 -6.819 -1.684 14.151 Atomic orbital electron populations 1.81331 1.12613 1.09577 1.08147 1.25005 0.91604 0.92786 0.93102 1.16785 0.85203 1.08330 0.97675 1.23338 0.88327 0.90474 0.96546 1.68235 1.09369 1.17575 1.27520 1.20249 0.91099 0.90194 0.88180 1.60123 1.01361 1.12904 1.46059 1.19949 0.95174 0.91785 0.86975 1.21079 0.95697 1.30467 1.04552 0.92272 1.25329 0.95024 0.96058 1.00240 1.70004 1.11537 1.38349 1.36622 0.86282 0.79856 0.78015 0.82149 1.19345 1.21970 1.18582 1.20817 0.90566 0.87141 1.01775 1.20373 0.95894 1.01440 0.94190 1.21190 0.93286 0.90439 0.98850 1.21949 0.96405 1.02392 0.98689 1.22761 0.99960 0.95889 0.88548 1.67578 1.04840 1.14832 1.35555 1.22580 0.91147 0.96007 0.96073 1.21569 0.92517 1.04370 0.92112 1.98416 1.73226 1.86093 1.42326 1.21718 0.90544 0.92370 0.98329 0.78395 0.96977 0.97853 0.93003 0.88697 0.92614 0.86598 0.85492 0.82207 0.82428 0.79959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -9.75 18.54 19.00 0.35 -9.40 16 2 C 0.29 5.08 15.37 88.33 1.36 6.44 16 3 C -0.07 -1.20 5.75 -21.19 -0.12 -1.33 16 4 C 0.18 3.13 10.91 85.04 0.93 4.06 16 5 N -0.52 -13.26 9.85 -192.17 -1.89 -15.15 16 6 C 0.33 9.54 5.12 133.21 0.68 10.22 16 7 N -0.48 -16.71 3.84 -710.44 -2.73 -19.44 16 8 C 0.19 7.81 3.35 85.56 0.29 8.10 16 9 C -0.48 -23.72 6.44 25.60 0.16 -23.56 16 10 H 0.06 3.32 6.35 -2.91 -0.02 3.30 16 11 C 0.03 1.69 5.47 84.66 0.46 2.15 16 12 N -0.92 -52.15 13.96 21.45 0.30 -51.85 16 13 Si 0.91 40.72 27.47 68.60 1.88 42.60 16 14 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 15 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 16 H -0.26 -11.27 6.54 99.48 0.65 -10.62 16 17 C 0.12 3.83 4.89 85.56 0.42 4.25 16 18 C -0.12 -4.14 3.54 -19.77 -0.07 -4.21 16 19 C -0.01 -0.42 6.64 22.47 0.15 -0.27 16 20 C -0.17 -6.58 10.11 22.36 0.23 -6.36 16 21 C 0.09 3.15 11.18 84.69 0.95 4.10 16 22 N -0.52 -19.95 10.36 -195.84 -2.03 -21.98 16 23 C 0.10 3.52 10.76 84.67 0.91 4.44 16 24 C -0.07 -1.81 6.35 22.50 0.14 -1.67 16 25 Cl -0.03 -0.79 28.46 -2.72 -0.08 -0.87 16 26 C 0.00 -0.02 9.69 22.73 0.22 0.20 16 27 H 0.20 2.23 8.06 -2.91 -0.02 2.20 16 28 H 0.01 0.54 6.92 -2.39 -0.02 0.53 16 29 H 0.00 0.16 7.23 -2.39 -0.02 0.14 16 30 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 31 H 0.09 2.47 8.01 -2.39 -0.02 2.45 16 32 H 0.06 1.70 7.87 -2.39 -0.02 1.68 16 33 H 0.12 4.44 8.00 -2.91 -0.02 4.42 16 34 H 0.13 4.48 8.06 -2.91 -0.02 4.46 16 35 H 0.16 5.02 8.06 -2.91 -0.02 5.00 16 36 H 0.16 4.89 8.06 -2.91 -0.02 4.87 16 37 H 0.18 2.07 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -62.81 341.78 3.58 -59.23 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: 1.06 Total: 10.28 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: 6.70 Total: 6.56 kcal Atomic # 7 Polarization: -111.82 SS G_CDS: -6.00 Total: -117.81 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 1.88 Total: 42.60 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -0.08 Total: -0.87 kcal Total: -62.81 3.58 -59.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164004249.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.736 kcal (2) G-P(sol) polarization free energy of solvation -62.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds