Wall clock time and date at job start Tue Mar 31 2020 15:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38708 * 120.81354 * 2 1 4 4 Cl 1.73600 * 120.38365 * 359.97438 * 3 2 1 5 5 C 1.38301 * 119.23999 * 179.97438 * 3 2 1 6 6 N 1.31925 * 120.92294 * 0.02562 * 5 3 2 7 7 C 1.31848 * 121.79064 * 359.97438 * 6 5 3 8 8 Cl 1.73605 * 119.67151 * 179.97438 * 7 6 5 9 9 C 1.39092 * 120.66103 * 0.25130 * 7 6 5 10 10 N 1.39780 * 120.49175 * 179.74073 * 9 7 6 11 11 C 1.46898 * 110.99566 * 63.95525 * 10 9 7 12 12 C 1.50702 * 109.46862 * 161.36939 * 11 10 9 13 13 H 1.07995 * 120.00248 * 354.53372 * 12 11 10 14 14 C 1.37881 * 119.99827 * 174.53384 * 12 11 10 15 15 N 1.31517 * 119.99750 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 120.00062 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.47029 * 90.00192 * 16 14 12 18 18 H 1.48503 * 109.46941 * 210.00067 * 16 14 12 19 19 H 1.48504 * 109.46984 * 329.99864 * 16 14 12 20 20 C 1.46896 * 110.99897 * 300.00355 * 10 9 7 21 21 C 1.54264 * 110.03577 * 326.46737 * 20 10 9 22 22 C 1.54889 * 104.19889 * 217.10976 * 21 20 10 23 23 C 1.54896 * 102.74641 * 37.93820 * 22 21 20 24 24 C 1.53877 * 110.03145 * 209.30138 * 20 10 9 25 25 H 1.09003 * 109.46909 * 90.00803 * 1 2 3 26 26 H 1.09005 * 109.47011 * 210.00102 * 1 2 3 27 27 H 1.08997 * 109.47551 * 330.00289 * 1 2 3 28 28 H 1.07993 * 119.53952 * 179.97438 * 5 3 2 29 29 H 1.09002 * 109.47291 * 281.36868 * 11 10 9 30 30 H 1.08997 * 109.47196 * 41.37312 * 11 10 9 31 31 H 0.96996 * 120.00260 * 180.02562 * 15 14 12 32 32 H 1.08999 * 110.02041 * 87.91468 * 20 10 9 33 33 H 1.09002 * 110.48435 * 335.78400 * 21 20 10 34 34 H 1.08994 * 110.48880 * 98.42688 * 21 20 10 35 35 H 1.09000 * 110.75168 * 279.62823 * 22 21 20 36 36 H 1.08998 * 110.91716 * 156.32865 * 22 21 20 37 37 H 1.09003 * 110.48352 * 203.37931 * 23 22 21 38 38 H 1.08999 * 110.59384 * 80.79617 * 23 22 21 39 39 H 1.09001 * 110.03193 * 238.57532 * 24 20 10 40 40 H 1.09005 * 110.03037 * 0.02562 * 24 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2175 1.1913 0.0000 4 17 1.3811 2.7125 -0.0007 5 6 3.6000 1.1533 0.0005 6 7 4.2466 0.0034 0.0005 7 6 3.6102 -1.1513 0.0005 8 17 4.5165 -2.6321 -0.0001 9 6 2.2200 -1.1951 -0.0047 10 7 1.5490 -2.4213 -0.0101 11 6 1.8199 -3.1750 1.2212 12 6 0.7665 -4.2374 1.4020 13 1 -0.0733 -4.2859 0.7246 14 6 0.8748 -5.1474 2.4321 15 7 -0.0444 -6.0748 2.5895 16 14 2.3269 -5.0630 3.6041 17 1 1.9876 -4.1814 4.7499 18 1 2.6394 -6.4261 4.1039 19 1 3.5079 -4.5146 2.8902 20 6 1.9022 -3.2094 -1.1984 21 6 2.1553 -2.2728 -2.3977 22 6 1.5767 -3.0435 -3.6103 23 6 0.3087 -3.7083 -3.0192 24 6 0.7281 -4.1222 -1.5936 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 4.1580 2.0779 0.0001 29 1 2.8012 -3.6445 1.1514 30 1 1.8017 -2.4965 2.0740 31 1 0.0316 -6.7148 3.3144 32 1 2.7902 -3.8090 -0.9980 33 1 1.6304 -1.3274 -2.2609 34 1 3.2237 -2.1014 -2.5291 35 1 2.2812 -3.7981 -3.9602 36 1 1.3138 -2.3591 -4.4169 37 1 0.0295 -4.5846 -3.6043 38 1 -0.5159 -2.9965 -2.9829 39 1 1.0466 -5.1646 -1.5858 40 1 -0.1039 -3.9799 -0.9040 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166533864.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:41 Heat of formation + Delta-G solvation = 31.796439 kcal Electronic energy + Delta-G solvation = -24860.711630 eV Core-core repulsion = 21341.273354 eV Total energy + Delta-G solvation = -3519.438275 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.85163 -38.37307 -36.85865 -36.40293 -35.29135 -33.46579 -32.46975 -30.17796 -28.61224 -27.76826 -27.60645 -26.03794 -23.21923 -22.11901 -21.27513 -20.24779 -19.43291 -17.40743 -17.09791 -16.70202 -16.00307 -15.53121 -15.30832 -14.79736 -14.30410 -14.06781 -13.62948 -13.24063 -13.11304 -12.91613 -12.80208 -12.57633 -12.51194 -12.29132 -11.75680 -11.33583 -11.28653 -11.18964 -11.08427 -10.84502 -10.74450 -10.68748 -10.59790 -10.42392 -10.29080 -10.18031 -9.94541 -9.84320 -9.19889 -9.08657 -8.62646 -8.58136 -7.68550 -6.10075 -4.07902 0.72358 1.07377 1.72571 2.09027 3.24648 3.32619 3.36181 3.44550 4.19012 4.37453 4.45036 4.59115 4.76784 4.95873 5.03515 5.10217 5.22136 5.31363 5.47542 5.68127 5.81531 5.82828 5.86377 5.95045 5.96457 6.04162 6.09565 6.14214 6.20314 6.33360 6.45921 6.53357 6.57491 6.69199 6.74721 6.89384 7.11295 7.53195 7.56819 7.63110 7.89647 8.54999 9.00394 9.50762 11.01595 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.011075 B = 0.005794 C = 0.005174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2527.628546 B = 4831.791050 C = 5410.824825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.008 4.008 3 C -0.088 4.088 4 Cl -0.051 7.051 5 C 0.114 3.886 6 N -0.467 5.467 7 C 0.142 3.858 8 Cl -0.017 7.017 9 C 0.102 3.898 10 N -0.480 5.480 11 C 0.155 3.845 12 C -0.507 4.507 13 H 0.094 0.906 14 C 0.075 3.925 15 N -0.896 5.896 16 Si 0.859 3.141 17 H -0.276 1.276 18 H -0.285 1.285 19 H -0.264 1.264 20 C 0.093 3.907 21 C -0.131 4.131 22 C -0.119 4.119 23 C -0.123 4.123 24 C -0.106 4.106 25 H 0.079 0.921 26 H 0.100 0.900 27 H 0.069 0.931 28 H 0.168 0.832 29 H 0.017 0.983 30 H 0.019 0.981 31 H 0.264 0.736 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.055 0.945 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.969 12.754 -9.129 16.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.018 4.018 3 C -0.118 4.118 4 Cl -0.023 7.023 5 C -0.044 4.044 6 N -0.179 5.179 7 C -0.025 4.025 8 Cl 0.011 6.989 9 C 0.003 3.997 10 N -0.202 5.202 11 C 0.031 3.969 12 C -0.545 4.545 13 H 0.111 0.889 14 C -0.127 4.127 15 N -0.535 5.535 16 Si 0.686 3.314 17 H -0.202 1.202 18 H -0.211 1.211 19 H -0.189 1.189 20 C -0.014 4.014 21 C -0.169 4.169 22 C -0.157 4.157 23 C -0.161 4.161 24 C -0.144 4.144 25 H 0.098 0.902 26 H 0.119 0.881 27 H 0.088 0.912 28 H 0.185 0.815 29 H 0.035 0.965 30 H 0.037 0.963 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.321 12.628 -9.009 16.103 hybrid contribution 0.975 -0.140 0.912 1.343 sum 5.296 12.488 -8.097 15.797 Atomic orbital electron populations 1.20797 0.87985 1.04616 1.03360 1.20199 0.98357 0.88911 0.94284 1.21971 0.93622 0.87840 1.08333 1.98357 1.78218 1.28858 1.96842 1.22456 0.89362 0.95621 0.96985 1.67026 1.40358 0.97123 1.13379 1.23197 0.89660 0.88891 1.00743 1.98415 1.75864 1.28493 1.96079 1.19552 0.88111 0.94290 0.97755 1.59941 1.54437 1.00726 1.05047 1.20564 0.97849 0.93352 0.85149 1.21086 1.08294 1.10854 1.14303 0.88861 1.24812 0.95659 0.95155 0.97117 1.69860 1.34128 1.17497 1.31976 0.87099 0.84366 0.77696 0.82233 1.20184 1.21082 1.18858 1.22392 0.98161 0.93433 0.87370 1.22700 0.99930 0.98965 0.95304 1.22405 0.97756 0.98879 0.96677 1.22398 0.96988 0.99649 0.97060 1.22265 0.99144 0.97951 0.95049 0.90237 0.88095 0.91207 0.81456 0.96493 0.96269 0.92619 0.92211 0.91394 0.92599 0.91846 0.92258 0.92350 0.92015 0.91952 0.88423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.51 9.46 36.00 0.34 -1.17 16 2 C -0.01 -0.12 5.44 -104.11 -0.57 -0.69 16 3 C -0.09 -1.17 6.34 -39.38 -0.25 -1.41 16 4 Cl -0.05 -0.56 27.47 -51.86 -1.42 -1.99 16 5 C 0.11 1.51 10.98 -17.49 -0.19 1.32 16 6 N -0.47 -7.46 10.33 -10.17 -0.11 -7.57 16 7 C 0.14 2.45 6.11 -17.23 -0.11 2.34 16 8 Cl -0.02 -0.31 23.05 -51.86 -1.20 -1.50 16 9 C 0.10 1.75 2.83 -83.57 -0.24 1.52 16 10 N -0.48 -9.14 3.32 -163.49 -0.54 -9.68 16 11 C 0.15 3.50 3.21 -4.98 -0.02 3.49 16 12 C -0.51 -13.18 8.85 -34.44 -0.30 -13.49 16 13 H 0.09 2.56 5.52 -52.49 -0.29 2.27 16 14 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 15 N -0.90 -26.11 13.96 55.43 0.77 -25.33 16 16 Si 0.86 20.88 27.58 -169.99 -4.69 16.19 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.26 -6.24 6.39 56.52 0.36 -5.88 16 20 C 0.09 1.64 1.91 -66.60 -0.13 1.52 16 21 C -0.13 -1.97 4.92 -25.07 -0.12 -2.09 16 22 C -0.12 -1.56 6.91 -24.73 -0.17 -1.74 16 23 C -0.12 -1.74 6.83 -25.07 -0.17 -1.92 16 24 C -0.11 -1.88 5.57 -25.62 -0.14 -2.03 16 25 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.10 1.60 7.56 -51.93 -0.39 1.21 16 27 H 0.07 0.84 7.03 -51.93 -0.36 0.47 16 28 H 0.17 1.67 8.06 -52.49 -0.42 1.25 16 29 H 0.02 0.40 4.08 -51.93 -0.21 0.19 16 30 H 0.02 0.46 7.63 -51.93 -0.40 0.06 16 31 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.06 1.14 5.61 -51.93 -0.29 0.85 16 33 H 0.07 1.03 6.60 -51.93 -0.34 0.69 16 34 H 0.06 0.84 7.53 -51.93 -0.39 0.45 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 40 H 0.10 1.98 5.51 -51.93 -0.29 1.70 16 LS Contribution 333.39 15.07 5.02 5.02 Total: -1.00 -27.73 333.39 -9.42 -37.15 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -5.10 Total: 0.10 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: -2.16 Total: -12.40 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: 0.13 Total: -42.58 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.69 Total: 16.19 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -2.62 Total: -3.49 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -27.73 -9.42 -37.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166533864.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.951 kcal (2) G-P(sol) polarization free energy of solvation -27.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds