Wall clock time and date at job start Tue Mar 31 2020 15:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38708 * 120.81354 * 2 1 4 4 Cl 1.73600 * 120.38365 * 359.97438 * 3 2 1 5 5 C 1.38301 * 119.23999 * 179.97438 * 3 2 1 6 6 N 1.31925 * 120.92294 * 0.02562 * 5 3 2 7 7 C 1.31848 * 121.79064 * 359.97438 * 6 5 3 8 8 Cl 1.73605 * 119.67151 * 179.97438 * 7 6 5 9 9 C 1.39092 * 120.66103 * 0.25130 * 7 6 5 10 10 N 1.39780 * 120.49175 * 179.74073 * 9 7 6 11 11 C 1.46898 * 110.99566 * 63.95525 * 10 9 7 12 12 C 1.50702 * 109.46862 * 161.36939 * 11 10 9 13 13 H 1.07995 * 120.00248 * 354.53372 * 12 11 10 14 14 C 1.37881 * 119.99827 * 174.53384 * 12 11 10 15 15 N 1.31517 * 119.99750 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 120.00062 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.47029 * 90.00192 * 16 14 12 18 18 H 1.48503 * 109.46941 * 210.00067 * 16 14 12 19 19 H 1.48504 * 109.46984 * 329.99864 * 16 14 12 20 20 C 1.46896 * 110.99897 * 300.00355 * 10 9 7 21 21 C 1.54264 * 110.03577 * 326.46737 * 20 10 9 22 22 C 1.54889 * 104.19889 * 217.10976 * 21 20 10 23 23 C 1.54896 * 102.74641 * 37.93820 * 22 21 20 24 24 C 1.53877 * 110.03145 * 209.30138 * 20 10 9 25 25 H 1.09003 * 109.46909 * 90.00803 * 1 2 3 26 26 H 1.09005 * 109.47011 * 210.00102 * 1 2 3 27 27 H 1.08997 * 109.47551 * 330.00289 * 1 2 3 28 28 H 1.07993 * 119.53952 * 179.97438 * 5 3 2 29 29 H 1.09002 * 109.47291 * 281.36868 * 11 10 9 30 30 H 1.08997 * 109.47196 * 41.37312 * 11 10 9 31 31 H 0.96996 * 120.00260 * 180.02562 * 15 14 12 32 32 H 1.08999 * 110.02041 * 87.91468 * 20 10 9 33 33 H 1.09002 * 110.48435 * 335.78400 * 21 20 10 34 34 H 1.08994 * 110.48880 * 98.42688 * 21 20 10 35 35 H 1.09000 * 110.75168 * 279.62823 * 22 21 20 36 36 H 1.08998 * 110.91716 * 156.32865 * 22 21 20 37 37 H 1.09003 * 110.48352 * 203.37931 * 23 22 21 38 38 H 1.08999 * 110.59384 * 80.79617 * 23 22 21 39 39 H 1.09001 * 110.03193 * 238.57532 * 24 20 10 40 40 H 1.09005 * 110.03037 * 0.02562 * 24 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2175 1.1913 0.0000 4 17 1.3811 2.7125 -0.0007 5 6 3.6000 1.1533 0.0005 6 7 4.2466 0.0034 0.0005 7 6 3.6102 -1.1513 0.0005 8 17 4.5165 -2.6321 -0.0001 9 6 2.2200 -1.1951 -0.0047 10 7 1.5490 -2.4213 -0.0101 11 6 1.8199 -3.1750 1.2212 12 6 0.7665 -4.2374 1.4020 13 1 -0.0733 -4.2859 0.7246 14 6 0.8748 -5.1474 2.4321 15 7 -0.0444 -6.0748 2.5895 16 14 2.3269 -5.0630 3.6041 17 1 1.9876 -4.1814 4.7499 18 1 2.6394 -6.4261 4.1039 19 1 3.5079 -4.5146 2.8902 20 6 1.9022 -3.2094 -1.1984 21 6 2.1553 -2.2728 -2.3977 22 6 1.5767 -3.0435 -3.6103 23 6 0.3087 -3.7083 -3.0192 24 6 0.7281 -4.1222 -1.5936 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 4.1580 2.0779 0.0001 29 1 2.8012 -3.6445 1.1514 30 1 1.8017 -2.4965 2.0740 31 1 0.0316 -6.7148 3.3144 32 1 2.7902 -3.8090 -0.9980 33 1 1.6304 -1.3274 -2.2609 34 1 3.2237 -2.1014 -2.5291 35 1 2.2812 -3.7981 -3.9602 36 1 1.3138 -2.3591 -4.4169 37 1 0.0295 -4.5846 -3.6043 38 1 -0.5159 -2.9965 -2.9829 39 1 1.0466 -5.1646 -1.5858 40 1 -0.1039 -3.9799 -0.9040 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166533864.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:41 Heat of formation + Delta-G solvation = 16.967748 kcal Electronic energy + Delta-G solvation = -24861.354650 eV Core-core repulsion = 21341.273354 eV Total energy + Delta-G solvation = -3520.081296 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.10487 -39.67503 -38.00224 -37.56959 -36.63077 -34.97366 -34.20466 -31.57691 -30.01215 -29.22543 -28.79741 -27.49250 -24.64241 -23.36970 -22.90575 -21.41538 -20.83208 -19.13586 -18.41154 -17.95103 -17.42739 -16.95522 -16.61025 -16.14048 -15.91186 -15.49850 -14.98117 -14.57378 -14.44620 -14.39819 -14.18149 -13.98669 -13.91356 -13.35815 -13.07379 -12.88627 -12.79436 -12.49088 -12.36723 -12.29277 -12.14136 -12.07439 -11.97719 -11.86822 -11.81349 -11.55413 -11.41546 -11.10284 -10.94074 -10.73110 -10.38192 -9.81055 -9.20052 -8.23533 -6.23533 -0.46562 -0.11058 0.53702 0.96393 1.28944 1.33094 1.40162 2.26564 2.33129 2.81629 3.09047 3.32626 3.48364 3.52382 3.73072 3.81739 3.93363 4.14753 4.32594 4.48911 4.59345 4.61197 4.65330 4.73908 4.77977 4.85031 4.87714 4.91651 4.97116 4.99062 5.06715 5.12810 5.28375 5.32919 5.40149 5.50261 5.54601 5.65139 5.96509 6.30161 6.40930 6.60984 6.87305 7.37899 8.90937 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.011075 B = 0.005794 C = 0.005174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2527.628546 B = 4831.791050 C = 5410.824825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.010 4.010 3 C -0.082 4.082 4 Cl -0.023 7.023 5 C 0.125 3.875 6 N -0.480 5.480 7 C 0.131 3.869 8 Cl -0.032 7.032 9 C 0.078 3.922 10 N -0.480 5.480 11 C 0.167 3.833 12 C -0.498 4.498 13 H 0.070 0.930 14 C 0.022 3.978 15 N -0.940 5.940 16 Si 0.912 3.088 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.255 1.255 20 C 0.090 3.910 21 C -0.119 4.119 22 C -0.111 4.111 23 C -0.115 4.115 24 C -0.106 4.106 25 H 0.094 0.906 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.205 0.795 29 H 0.014 0.986 30 H 0.009 0.991 31 H 0.264 0.736 32 H 0.043 0.957 33 H 0.069 0.931 34 H 0.056 0.944 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.042 0.958 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.867 15.648 -10.307 19.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.019 4.019 3 C -0.111 4.111 4 Cl 0.006 6.994 5 C -0.033 4.033 6 N -0.191 5.191 7 C -0.034 4.034 8 Cl -0.004 7.004 9 C -0.021 4.021 10 N -0.201 5.201 11 C 0.042 3.958 12 C -0.536 4.536 13 H 0.088 0.912 14 C -0.176 4.176 15 N -0.581 5.581 16 Si 0.737 3.263 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.179 1.179 20 C -0.016 4.016 21 C -0.157 4.157 22 C -0.148 4.148 23 C -0.152 4.152 24 C -0.144 4.144 25 H 0.113 0.887 26 H 0.091 0.909 27 H 0.106 0.894 28 H 0.222 0.778 29 H 0.032 0.968 30 H 0.028 0.972 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.061 0.939 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.228 15.543 -10.202 19.313 hybrid contribution 0.627 -0.868 1.236 1.635 sum 5.854 14.675 -8.966 18.167 Atomic orbital electron populations 1.20774 0.87235 1.04072 1.04170 1.20366 0.98960 0.88893 0.93696 1.21981 0.93817 0.88385 1.06935 1.98376 1.77702 1.26710 1.96579 1.23091 0.89677 0.95915 0.94577 1.67065 1.40713 0.97349 1.14013 1.23098 0.89462 0.89050 1.01826 1.98403 1.76081 1.29671 1.96224 1.19554 0.88343 0.93913 1.00263 1.59745 1.55144 1.01279 1.03915 1.20236 0.96247 0.92508 0.86814 1.21330 1.08148 1.11124 1.12990 0.91245 1.25499 0.97974 0.95159 0.98932 1.69987 1.36216 1.18793 1.33105 0.86234 0.81855 0.77720 0.80461 1.19656 1.20910 1.17918 1.22420 0.97143 0.93928 0.88136 1.22586 1.00072 0.98447 0.94616 1.22399 0.96876 0.99168 0.96394 1.22333 0.97858 1.00472 0.94577 1.22165 0.98105 0.97122 0.97047 0.88717 0.90854 0.89425 0.77794 0.96804 0.97245 0.92690 0.93888 0.91271 0.92564 0.91162 0.89647 0.91045 0.91338 0.93941 0.91674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.73 9.46 71.24 0.67 -2.05 16 2 C -0.01 -0.28 5.44 -19.53 -0.11 -0.39 16 3 C -0.08 -1.90 6.34 22.40 0.14 -1.76 16 4 Cl -0.02 -0.41 27.47 -2.72 -0.07 -0.49 16 5 C 0.13 2.90 10.98 84.69 0.93 3.83 16 6 N -0.48 -14.28 10.33 -186.09 -1.92 -16.21 16 7 C 0.13 4.40 6.11 84.90 0.52 4.92 16 8 Cl -0.03 -1.15 23.05 -2.72 -0.06 -1.21 16 9 C 0.08 2.63 2.83 38.30 0.11 2.73 16 10 N -0.48 -18.53 3.32 -671.17 -2.23 -20.75 16 11 C 0.17 7.74 3.21 85.56 0.27 8.01 16 12 C -0.50 -26.90 8.85 25.60 0.23 -26.67 16 13 H 0.07 4.04 5.52 -2.91 -0.02 4.03 16 14 C 0.02 1.25 5.47 84.66 0.46 1.72 16 15 N -0.94 -56.79 13.96 21.45 0.30 -56.49 16 16 Si 0.91 43.83 27.58 68.60 1.89 45.73 16 17 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 18 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 19 H -0.26 -11.78 6.39 99.48 0.64 -11.14 16 20 C 0.09 3.23 1.91 45.64 0.09 3.32 16 21 C -0.12 -3.42 4.92 31.67 0.16 -3.26 16 22 C -0.11 -2.64 6.91 31.89 0.22 -2.42 16 23 C -0.11 -3.13 6.83 31.67 0.22 -2.91 16 24 C -0.11 -3.90 5.57 31.32 0.17 -3.72 16 25 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.07 2.33 7.56 -2.38 -0.02 2.31 16 27 H 0.09 1.90 7.03 -2.39 -0.02 1.88 16 28 H 0.21 3.11 8.06 -2.91 -0.02 3.09 16 29 H 0.01 0.67 4.08 -2.39 -0.01 0.66 16 30 H 0.01 0.46 7.63 -2.39 -0.02 0.44 16 31 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 32 H 0.04 1.69 5.61 -2.39 -0.01 1.67 16 33 H 0.07 1.97 6.60 -2.39 -0.02 1.95 16 34 H 0.06 1.61 7.53 -2.39 -0.02 1.59 16 35 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.06 2.81 5.51 -2.38 -0.01 2.80 16 Total: -1.00 -61.74 333.39 2.99 -58.75 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: 1.00 Total: 9.33 kcal Atomic # 6 Polarization: -22.75 SS G_CDS: 4.08 Total: -18.67 kcal Atomic # 7 Polarization: -89.60 SS G_CDS: -3.85 Total: -93.45 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.89 Total: 45.73 kcal Atomic # 17 Polarization: -1.56 SS G_CDS: -0.14 Total: -1.69 kcal Total: -61.74 2.99 -58.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166533864.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.715 kcal (2) G-P(sol) polarization free energy of solvation -61.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds