Wall clock time and date at job start Tue Mar 31 2020 15:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32227 * 120.49599 * 2 1 4 4 C 1.32082 * 121.19488 * 179.97438 * 3 2 1 5 5 Cl 1.73594 * 118.89528 * 180.02562 * 4 3 2 6 6 N 1.31830 * 122.20917 * 359.73424 * 4 3 2 7 7 C 1.32955 * 120.83330 * 0.52773 * 6 4 3 8 8 N 1.38008 * 120.63492 * 179.76198 * 7 6 4 9 9 C 1.36899 * 119.99802 * 185.85238 * 8 7 6 10 10 H 1.08002 * 120.00122 * 46.97981 * 9 8 7 11 11 C 1.38892 * 120.00130 * 226.97086 * 9 8 7 12 12 N 1.31498 * 119.99953 * 204.43907 * 11 9 8 13 13 Si 1.86801 * 119.99813 * 24.43858 * 11 9 8 14 14 H 1.48493 * 109.47299 * 86.66871 * 13 11 9 15 15 H 1.48503 * 109.47054 * 206.66979 * 13 11 9 16 16 H 1.48506 * 109.47180 * 326.66633 * 13 11 9 17 17 C 1.46502 * 120.00273 * 5.85620 * 8 7 6 18 18 C 1.50698 * 109.47069 * 275.60511 * 17 8 7 19 19 C 1.38239 * 119.99945 * 269.72471 * 18 17 8 20 20 C 1.38234 * 119.99751 * 179.76831 * 19 18 17 21 21 C 1.38237 * 120.00413 * 0.50243 * 20 19 18 22 22 C 1.38234 * 119.99637 * 359.75144 * 21 20 19 23 23 C 1.38240 * 119.99993 * 89.99743 * 18 17 8 24 24 C 1.39790 * 120.49819 * 179.97438 * 2 1 3 25 25 C 1.43196 * 120.98677 * 0.04687 * 24 2 1 26 26 N 3.49932 * 81.51191 * 180.02562 * 2 1 3 27 27 H 1.08998 * 109.47340 * 270.02846 * 1 2 3 28 28 H 1.09001 * 109.47279 * 30.02958 * 1 2 3 29 29 H 1.09000 * 109.46622 * 150.02562 * 1 2 3 30 30 H 0.97003 * 119.99349 * 185.00387 * 12 11 9 31 31 H 1.08995 * 109.47513 * 155.60124 * 17 8 7 32 32 H 1.08997 * 109.46965 * 35.60372 * 17 8 7 33 33 H 1.07995 * 120.00102 * 359.97438 * 19 18 17 34 34 H 1.08004 * 119.99829 * 180.23391 * 20 19 18 35 35 H 1.07994 * 120.00104 * 179.72124 * 21 20 19 36 36 H 1.08004 * 120.00179 * 179.97438 * 22 21 20 37 37 H 1.07995 * 120.00088 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1780 1.1393 0.0000 4 6 3.4987 1.1555 0.0005 5 17 4.3189 2.6854 0.0012 6 7 4.2149 0.0487 0.0062 7 6 3.6267 -1.1437 0.0012 8 7 4.3806 -2.2997 0.0023 9 6 3.7670 -3.5170 -0.1237 10 1 3.0189 -3.6681 -0.8878 11 6 4.1068 -4.5577 0.7309 12 7 3.9199 -5.8042 0.3559 13 14 4.8293 -4.1868 2.4132 14 1 3.7298 -3.9802 3.3896 15 1 5.6732 -5.3273 2.8519 16 1 5.6596 -2.9580 2.3353 17 6 5.8373 -2.2242 0.1384 18 6 6.4560 -1.9784 -1.2136 19 6 6.8230 -3.0468 -2.0103 20 6 7.3861 -2.8213 -3.2525 21 6 7.5919 -1.5274 -3.6935 22 6 7.2298 -0.4591 -2.8946 23 6 6.6618 -0.6845 -1.6546 24 6 2.2164 -1.2045 0.0005 25 6 1.5328 -2.4627 0.0001 26 7 0.9905 -3.4610 -0.0015 27 1 -0.3634 0.0005 1.0276 28 1 -0.3634 0.8897 -0.5143 29 1 -0.3632 -0.8902 -0.5134 30 1 4.0887 -6.5285 0.9787 31 1 6.2134 -3.1630 0.5448 32 1 6.0975 -1.4070 0.8110 33 1 6.6666 -4.0576 -1.6638 34 1 7.6693 -3.6560 -3.8766 35 1 8.0360 -1.3513 -4.6621 36 1 7.3909 0.5519 -3.2389 37 1 6.3796 0.1502 -1.0301 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166992400.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:45 Heat of formation + Delta-G solvation = 118.279784 kcal Electronic energy + Delta-G solvation = -25365.698197 eV Core-core repulsion = 21748.902627 eV Total energy + Delta-G solvation = -3616.795570 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.079 amu Computer time = 2.25 seconds Orbital eigenvalues (eV) -40.52825 -38.90015 -37.15127 -36.42247 -35.53935 -33.50967 -32.67861 -31.83754 -30.49081 -30.36324 -28.25206 -26.23858 -25.28568 -23.52337 -22.10146 -21.57735 -20.70622 -18.26768 -18.16206 -17.45566 -16.77501 -16.06561 -15.53369 -15.07711 -14.81219 -14.75870 -14.42976 -13.63075 -13.36152 -13.09603 -12.99664 -12.90507 -12.84184 -12.48339 -12.38094 -12.23049 -12.02984 -11.82747 -11.61326 -11.49796 -11.19234 -11.11626 -11.07049 -10.65943 -10.53004 -10.46137 -10.27269 -9.96706 -9.33181 -8.89482 -8.74064 -8.48214 -8.33105 -7.43936 -6.93227 -4.51775 1.13108 1.68160 1.82440 1.84573 1.89854 2.88092 2.98244 3.04927 3.70317 3.78386 3.80752 3.86616 4.28989 4.46438 4.59344 4.66439 4.94719 5.22850 5.25165 5.25993 5.35898 5.41445 5.58965 5.71300 5.77081 5.77554 5.93997 6.02269 6.08221 6.17016 6.23637 6.40164 6.50471 6.64947 6.87256 6.89341 7.00314 7.13193 7.42534 7.45016 7.67372 8.00752 8.45921 8.63839 8.70362 8.98516 10.13423 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.008374 B = 0.007584 C = 0.004847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3342.887760 B = 3691.115696 C = 5774.862763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.258 3.742 3 N -0.583 5.583 4 C 0.422 3.578 5 Cl -0.002 7.002 6 N -0.577 5.577 7 C 0.428 3.572 8 N -0.392 5.392 9 C -0.341 4.341 10 H 0.118 0.882 11 C 0.088 3.912 12 N -0.810 5.810 13 Si 0.857 3.143 14 H -0.267 1.267 15 H -0.274 1.274 16 H -0.248 1.248 17 C 0.147 3.853 18 C -0.093 4.093 19 C -0.091 4.091 20 C -0.131 4.131 21 C -0.125 4.125 22 C -0.134 4.134 23 C -0.092 4.092 24 C -0.203 4.203 25 C 0.291 3.709 26 N -0.440 5.440 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.284 0.716 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.124 0.876 34 H 0.115 0.885 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.827 9.953 -1.651 10.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.113 3.887 3 N -0.310 5.310 4 C 0.125 3.875 5 Cl 0.025 6.975 6 N -0.307 5.307 7 C 0.181 3.819 8 N -0.080 5.080 9 C -0.469 4.469 10 H 0.135 0.865 11 C -0.127 4.127 12 N -0.439 5.439 13 Si 0.680 3.320 14 H -0.193 1.193 15 H -0.199 1.199 16 H -0.172 1.172 17 C 0.025 3.975 18 C -0.094 4.094 19 C -0.110 4.110 20 C -0.149 4.149 21 C -0.143 4.143 22 C -0.152 4.152 23 C -0.111 4.111 24 C -0.220 4.220 25 C -0.022 4.022 26 N -0.118 5.118 27 H 0.104 0.896 28 H 0.103 0.897 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.142 0.858 34 H 0.133 0.867 35 H 0.131 0.869 36 H 0.133 0.867 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.799 8.804 -1.628 9.726 hybrid contribution 0.403 -0.323 0.722 0.887 sum 4.201 8.481 -0.906 9.508 Atomic orbital electron populations 1.20768 0.87993 1.03782 1.03654 1.21164 0.96202 0.85506 0.85825 1.67589 1.07236 1.29364 1.26825 1.22319 0.86051 0.87123 0.92027 1.98379 1.77570 1.25276 1.96247 1.67200 1.40295 0.96435 1.26727 1.18528 0.86492 0.85677 0.91230 1.42619 1.03461 1.02500 1.59391 1.19398 1.25225 0.83685 1.18616 0.86467 1.25419 0.94799 0.94322 0.98136 1.69831 1.39952 0.98981 1.35127 0.87253 0.80445 0.79798 0.84497 1.19262 1.19948 1.17184 1.20967 0.80717 1.02395 0.93449 1.20204 0.98517 0.93371 0.97340 1.21164 0.96688 0.99208 0.93936 1.21057 1.00819 0.96657 0.96417 1.21057 1.00878 0.93021 0.99345 1.21082 1.00579 0.98464 0.95057 1.21338 0.96651 0.97049 0.96026 1.16559 0.91846 0.89280 1.24321 1.24208 0.92248 0.91579 0.94116 1.81143 1.12557 1.08459 1.09675 0.89579 0.89701 0.90373 0.90537 0.89860 0.89874 0.85816 0.86656 0.86904 0.86701 0.84757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.40 9.84 36.00 0.35 -1.04 16 2 C 0.26 4.48 6.86 -81.84 -0.56 3.91 16 3 N -0.58 -10.25 10.32 -7.61 -0.08 -10.32 16 4 C 0.42 7.48 8.17 -91.88 -0.75 6.72 16 5 Cl 0.00 -0.03 29.26 -51.86 -1.52 -1.55 16 6 N -0.58 -10.98 7.55 -10.59 -0.08 -11.06 16 7 C 0.43 8.91 7.34 -154.73 -1.14 7.77 16 8 N -0.39 -8.50 2.03 -115.84 -0.24 -8.73 16 9 C -0.34 -8.25 6.94 -15.05 -0.10 -8.35 16 10 H 0.12 3.18 5.83 -52.49 -0.31 2.88 16 11 C 0.09 2.15 5.14 -17.45 -0.09 2.06 16 12 N -0.81 -20.75 13.96 55.49 0.77 -19.98 16 13 Si 0.86 18.39 26.61 -169.99 -4.52 13.86 16 14 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 15 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 16 H -0.25 -4.97 5.37 56.52 0.30 -4.67 16 17 C 0.15 2.86 3.52 -5.19 -0.02 2.84 16 18 C -0.09 -1.70 5.43 -104.62 -0.57 -2.26 16 19 C -0.09 -1.61 9.70 -39.58 -0.38 -2.00 16 20 C -0.13 -2.03 10.05 -39.58 -0.40 -2.42 16 21 C -0.12 -1.78 10.05 -39.58 -0.40 -2.18 16 22 C -0.13 -1.99 10.05 -39.58 -0.40 -2.39 16 23 C -0.09 -1.54 9.17 -39.58 -0.36 -1.91 16 24 C -0.20 -4.08 5.78 -106.28 -0.61 -4.70 16 25 C 0.29 6.35 10.14 -22.47 -0.23 6.12 16 26 N -0.44 -10.33 17.50 41.84 0.73 -9.60 16 27 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.08 1.06 7.18 -51.93 -0.37 0.69 16 30 H 0.28 6.78 8.32 -40.82 -0.34 6.44 16 31 H 0.08 1.63 5.00 -51.93 -0.26 1.37 16 32 H 0.08 1.55 7.54 -51.93 -0.39 1.16 16 33 H 0.12 2.27 8.06 -52.49 -0.42 1.84 16 34 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 35 H 0.11 1.31 8.06 -52.49 -0.42 0.88 16 36 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 37 H 0.13 2.24 6.77 -52.49 -0.36 1.88 16 LS Contribution 334.15 15.07 5.04 5.04 Total: -1.00 -26.39 334.15 -9.00 -35.39 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -3.46 Total: 4.78 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: -5.66 Total: 2.17 kcal Atomic # 7 Polarization: -60.81 SS G_CDS: 1.11 Total: -59.69 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -4.52 Total: 13.86 kcal Atomic # 17 Polarization: -0.03 SS G_CDS: -1.52 Total: -1.55 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -26.39 -9.00 -35.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166992400.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.673 kcal (2) G-P(sol) polarization free energy of solvation -26.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.25 seconds