Wall clock time and date at job start Tue Mar 31 2020 15:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32227 * 120.49599 * 2 1 4 4 C 1.32082 * 121.19488 * 179.97438 * 3 2 1 5 5 Cl 1.73594 * 118.89528 * 180.02562 * 4 3 2 6 6 N 1.31830 * 122.20917 * 359.73424 * 4 3 2 7 7 C 1.32955 * 120.83330 * 0.52773 * 6 4 3 8 8 N 1.38008 * 120.63492 * 179.76198 * 7 6 4 9 9 C 1.36899 * 119.99802 * 185.85238 * 8 7 6 10 10 H 1.08002 * 120.00122 * 46.97981 * 9 8 7 11 11 C 1.38892 * 120.00130 * 226.97086 * 9 8 7 12 12 N 1.31498 * 119.99953 * 204.43907 * 11 9 8 13 13 Si 1.86801 * 119.99813 * 24.43858 * 11 9 8 14 14 H 1.48493 * 109.47299 * 86.66871 * 13 11 9 15 15 H 1.48503 * 109.47054 * 206.66979 * 13 11 9 16 16 H 1.48506 * 109.47180 * 326.66633 * 13 11 9 17 17 C 1.46502 * 120.00273 * 5.85620 * 8 7 6 18 18 C 1.50698 * 109.47069 * 275.60511 * 17 8 7 19 19 C 1.38239 * 119.99945 * 269.72471 * 18 17 8 20 20 C 1.38234 * 119.99751 * 179.76831 * 19 18 17 21 21 C 1.38237 * 120.00413 * 0.50243 * 20 19 18 22 22 C 1.38234 * 119.99637 * 359.75144 * 21 20 19 23 23 C 1.38240 * 119.99993 * 89.99743 * 18 17 8 24 24 C 1.39790 * 120.49819 * 179.97438 * 2 1 3 25 25 C 1.43196 * 120.98677 * 0.04687 * 24 2 1 26 26 N 3.49932 * 81.51191 * 180.02562 * 2 1 3 27 27 H 1.08998 * 109.47340 * 270.02846 * 1 2 3 28 28 H 1.09001 * 109.47279 * 30.02958 * 1 2 3 29 29 H 1.09000 * 109.46622 * 150.02562 * 1 2 3 30 30 H 0.97003 * 119.99349 * 185.00387 * 12 11 9 31 31 H 1.08995 * 109.47513 * 155.60124 * 17 8 7 32 32 H 1.08997 * 109.46965 * 35.60372 * 17 8 7 33 33 H 1.07995 * 120.00102 * 359.97438 * 19 18 17 34 34 H 1.08004 * 119.99829 * 180.23391 * 20 19 18 35 35 H 1.07994 * 120.00104 * 179.72124 * 21 20 19 36 36 H 1.08004 * 120.00179 * 179.97438 * 22 21 20 37 37 H 1.07995 * 120.00088 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1780 1.1393 0.0000 4 6 3.4987 1.1555 0.0005 5 17 4.3189 2.6854 0.0012 6 7 4.2149 0.0487 0.0062 7 6 3.6267 -1.1437 0.0012 8 7 4.3806 -2.2997 0.0023 9 6 3.7670 -3.5170 -0.1237 10 1 3.0189 -3.6681 -0.8878 11 6 4.1068 -4.5577 0.7309 12 7 3.9199 -5.8042 0.3559 13 14 4.8293 -4.1868 2.4132 14 1 3.7298 -3.9802 3.3896 15 1 5.6732 -5.3273 2.8519 16 1 5.6596 -2.9580 2.3353 17 6 5.8373 -2.2242 0.1384 18 6 6.4560 -1.9784 -1.2136 19 6 6.8230 -3.0468 -2.0103 20 6 7.3861 -2.8213 -3.2525 21 6 7.5919 -1.5274 -3.6935 22 6 7.2298 -0.4591 -2.8946 23 6 6.6618 -0.6845 -1.6546 24 6 2.2164 -1.2045 0.0005 25 6 1.5328 -2.4627 0.0001 26 7 0.9905 -3.4610 -0.0015 27 1 -0.3634 0.0005 1.0276 28 1 -0.3634 0.8897 -0.5143 29 1 -0.3632 -0.8902 -0.5134 30 1 4.0887 -6.5285 0.9787 31 1 6.2134 -3.1630 0.5448 32 1 6.0975 -1.4070 0.8110 33 1 6.6666 -4.0576 -1.6638 34 1 7.6693 -3.6560 -3.8766 35 1 8.0360 -1.3513 -4.6621 36 1 7.3909 0.5519 -3.2389 37 1 6.3796 0.1502 -1.0301 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166992400.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:44 Heat of formation + Delta-G solvation = 106.826780 kcal Electronic energy + Delta-G solvation = -25366.194836 eV Core-core repulsion = 21748.902627 eV Total energy + Delta-G solvation = -3617.292209 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.079 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.05717 -40.21083 -38.65735 -37.77457 -37.21605 -35.08416 -34.35121 -33.26747 -31.88780 -31.66818 -29.56884 -27.83346 -26.81822 -25.07306 -23.34898 -22.97406 -22.13823 -19.89549 -19.82608 -18.96741 -18.27194 -17.43627 -17.10660 -16.55936 -16.29806 -16.05957 -15.78751 -15.27214 -14.93377 -14.48364 -14.37322 -14.30116 -14.19975 -14.10842 -13.88526 -13.60972 -13.43104 -13.20318 -13.15877 -12.96847 -12.77965 -12.50713 -12.35994 -12.12663 -12.02762 -11.90294 -11.71298 -11.51799 -11.08839 -10.45920 -10.21998 -9.72702 -9.62221 -9.09785 -8.76465 -6.36985 -0.37871 0.32500 0.43093 0.48620 0.59665 1.14729 1.26289 1.28622 2.01037 2.08583 2.20336 2.24221 2.66817 2.98824 3.05191 3.21740 3.34680 3.72804 3.90100 3.96797 3.99975 4.23392 4.32626 4.40300 4.44064 4.57444 4.73554 4.76924 4.79099 4.83638 4.94945 5.15859 5.26023 5.30210 5.31862 5.64605 5.67588 5.75073 5.86475 5.93190 6.20088 6.28469 6.82172 6.89990 7.01559 7.30117 8.35037 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.008374 B = 0.007584 C = 0.004847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3342.887760 B = 3691.115696 C = 5774.862763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.273 3.727 3 N -0.575 5.575 4 C 0.419 3.581 5 Cl 0.034 6.966 6 N -0.578 5.578 7 C 0.431 3.569 8 N -0.408 5.408 9 C -0.336 4.336 10 H 0.079 0.921 11 C 0.057 3.943 12 N -0.858 5.858 13 Si 0.900 3.100 14 H -0.282 1.282 15 H -0.268 1.268 16 H -0.227 1.227 17 C 0.150 3.850 18 C -0.111 4.111 19 C -0.114 4.114 20 C -0.135 4.135 21 C -0.118 4.118 22 C -0.131 4.131 23 C -0.100 4.100 24 C -0.232 4.232 25 C 0.308 3.692 26 N -0.480 5.480 27 H 0.107 0.893 28 H 0.110 0.890 29 H 0.074 0.926 30 H 0.285 0.715 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.103 0.897 34 H 0.135 0.865 35 H 0.148 0.852 36 H 0.145 0.855 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.595 13.405 -2.212 14.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.128 3.872 3 N -0.302 5.302 4 C 0.122 3.878 5 Cl 0.062 6.938 6 N -0.307 5.307 7 C 0.184 3.816 8 N -0.098 5.098 9 C -0.465 4.465 10 H 0.097 0.903 11 C -0.154 4.154 12 N -0.489 5.489 13 Si 0.722 3.278 14 H -0.208 1.208 15 H -0.192 1.192 16 H -0.150 1.150 17 C 0.029 3.971 18 C -0.113 4.113 19 C -0.132 4.132 20 C -0.153 4.153 21 C -0.136 4.136 22 C -0.149 4.149 23 C -0.119 4.119 24 C -0.249 4.249 25 C -0.005 4.005 26 N -0.159 5.159 27 H 0.125 0.875 28 H 0.129 0.871 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.108 0.892 33 H 0.121 0.879 34 H 0.153 0.847 35 H 0.166 0.834 36 H 0.163 0.837 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.581 12.299 -2.192 13.306 hybrid contribution 0.130 -1.077 0.784 1.339 sum 4.711 11.222 -1.407 12.252 Atomic orbital electron populations 1.20919 0.84953 1.04872 1.05258 1.21766 0.97998 0.84325 0.83156 1.67806 1.07162 1.28972 1.26212 1.22860 0.86441 0.88106 0.90384 1.98397 1.76939 1.22591 1.95888 1.67306 1.40184 0.96143 1.27112 1.18755 0.86836 0.86204 0.89775 1.42582 1.04223 1.01910 1.61092 1.18892 1.24874 0.84927 1.17768 0.90319 1.25885 0.95139 0.93974 1.00409 1.69896 1.43027 0.99815 1.36176 0.86585 0.79733 0.80739 0.80776 1.20802 1.19230 1.15006 1.20934 0.79517 1.02011 0.94673 1.20166 0.99712 0.94340 0.97042 1.21150 0.98403 0.98281 0.95414 1.21331 1.00046 0.98293 0.95580 1.21459 0.99580 0.92066 1.00498 1.21449 0.99172 1.00196 0.94081 1.21391 0.97271 0.96143 0.97072 1.16840 0.91962 0.89610 1.26479 1.24457 0.91479 0.91592 0.92932 1.81134 1.13994 1.09398 1.11355 0.87497 0.87111 0.90718 0.90485 0.90877 0.89198 0.87887 0.84727 0.83387 0.83733 0.84773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.48 9.84 71.23 0.70 -1.78 16 2 C 0.27 8.93 6.86 42.87 0.29 9.22 16 3 N -0.58 -18.55 10.32 -177.99 -1.84 -20.39 16 4 C 0.42 13.72 8.17 180.79 1.48 15.20 16 5 Cl 0.03 0.87 29.26 -2.72 -0.08 0.79 16 6 N -0.58 -21.05 7.55 -187.42 -1.42 -22.47 16 7 C 0.43 17.81 7.34 133.74 0.98 18.79 16 8 N -0.41 -18.01 2.03 -520.40 -1.06 -19.07 16 9 C -0.34 -16.97 6.94 84.06 0.58 -16.39 16 10 H 0.08 4.54 5.83 -2.91 -0.02 4.53 16 11 C 0.06 2.87 5.14 84.90 0.44 3.31 16 12 N -0.86 -46.43 13.96 21.66 0.30 -46.13 16 13 Si 0.90 38.84 26.61 68.60 1.83 40.67 16 14 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 15 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 16 H -0.23 -8.91 5.37 99.48 0.53 -8.38 16 17 C 0.15 5.91 3.52 85.63 0.30 6.21 16 18 C -0.11 -4.06 5.43 -19.86 -0.11 -4.17 16 19 C -0.11 -4.09 9.70 22.27 0.22 -3.87 16 20 C -0.13 -3.97 10.05 22.27 0.22 -3.75 16 21 C -0.12 -3.00 10.05 22.27 0.22 -2.78 16 22 C -0.13 -3.49 10.05 22.27 0.22 -3.27 16 23 C -0.10 -3.20 9.17 22.27 0.20 -2.99 16 24 C -0.23 -9.26 5.78 -20.94 -0.12 -9.38 16 25 C 0.31 13.72 10.14 88.33 0.90 14.62 16 26 N -0.48 -23.42 17.50 19.00 0.33 -23.08 16 27 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.07 1.90 7.18 -2.39 -0.02 1.88 16 30 H 0.28 14.39 8.32 -92.71 -0.77 13.62 16 31 H 0.07 2.95 5.00 -2.39 -0.01 2.94 16 32 H 0.09 3.30 7.54 -2.39 -0.02 3.29 16 33 H 0.10 4.03 8.06 -2.91 -0.02 4.01 16 34 H 0.13 3.35 8.06 -2.91 -0.02 3.33 16 35 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 36 H 0.14 2.96 8.06 -2.91 -0.02 2.94 16 37 H 0.13 4.21 6.77 -2.91 -0.02 4.19 16 Total: -1.00 -59.35 334.15 5.57 -53.79 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: 0.96 Total: 16.91 kcal Atomic # 6 Polarization: 12.44 SS G_CDS: 6.53 Total: 18.98 kcal Atomic # 7 Polarization: -127.47 SS G_CDS: -3.67 Total: -131.14 kcal Atomic # 14 Polarization: 38.84 SS G_CDS: 1.83 Total: 40.67 kcal Atomic # 17 Polarization: 0.87 SS G_CDS: -0.08 Total: 0.79 kcal Total: -59.35 5.57 -53.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166992400.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.613 kcal (2) G-P(sol) polarization free energy of solvation -59.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds