Wall clock time and date at job start Tue Mar 31 2020 14:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31532 * 1 3 3 Si 1.86793 * 120.00334 * 2 1 4 4 H 1.48494 * 109.47544 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47294 * 300.00044 * 3 2 1 6 6 H 1.48506 * 109.47341 * 59.99852 * 3 2 1 7 7 C 1.38857 * 119.99494 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99200 * 186.67596 * 7 2 1 9 9 N 1.36877 * 120.00329 * 6.68067 * 7 2 1 10 10 C 1.46501 * 120.00074 * 186.20030 * 9 7 2 11 11 C 1.50697 * 109.47201 * 270.00046 * 10 9 7 12 12 C 1.38232 * 119.99990 * 269.72683 * 11 10 9 13 13 C 1.38236 * 120.00419 * 179.76339 * 12 11 10 14 14 C 1.38247 * 119.99516 * 0.51016 * 13 12 11 15 15 C 1.38233 * 119.99784 * 359.74397 * 14 13 12 16 16 C 1.38234 * 120.00132 * 359.97438 * 15 14 13 17 17 C 1.38439 * 119.99890 * 6.19986 * 9 7 2 18 18 N 1.33063 * 120.70458 * 83.47281 * 17 9 7 19 19 C 1.32146 * 121.33724 * 180.02562 * 18 17 9 20 20 Cl 1.73597 * 118.82277 * 179.97438 * 19 18 17 21 21 N 1.31668 * 122.35207 * 359.97438 * 19 18 17 22 22 C 1.33522 * 120.43648 * 0.04199 * 21 19 18 23 23 C 1.45922 * 134.88632 * 179.97438 * 22 21 19 24 24 C 1.34617 * 107.03753 * 179.97438 * 23 22 21 25 25 N 1.36448 * 109.88882 * 359.97438 * 24 23 22 26 26 H 0.96999 * 125.09402 * 180.02562 * 25 24 23 27 27 C 1.37471 * 109.81174 * 0.02562 * 25 24 23 28 28 H 0.97004 * 119.99968 * 354.99782 * 1 2 3 29 29 H 1.09003 * 109.47165 * 29.99911 * 10 9 7 30 30 H 1.08996 * 109.47339 * 149.99894 * 10 9 7 31 31 H 1.08004 * 119.99989 * 359.97438 * 12 11 10 32 32 H 1.07991 * 120.00648 * 180.22984 * 13 12 11 33 33 H 1.07999 * 119.99753 * 179.72720 * 14 13 12 34 34 H 1.08001 * 120.00012 * 179.97438 * 15 14 13 35 35 H 1.07999 * 119.99935 * 179.97438 * 16 15 14 36 36 H 1.08001 * 126.47926 * 359.97438 * 23 22 21 37 37 H 1.08001 * 125.05844 * 180.26858 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2494 1.6176 0.0000 4 1 3.7093 1.3463 -0.0006 5 1 1.8907 2.3964 -1.2125 6 1 1.8907 2.3964 1.2125 7 6 2.0095 -1.2026 -0.0005 8 1 3.0840 -1.2058 0.1082 9 7 1.3320 -2.3839 -0.1390 10 6 2.0443 -3.6570 -0.0039 11 6 2.5633 -4.0877 -1.3515 12 6 1.7834 -4.8823 -2.1707 13 6 2.2574 -5.2734 -3.4090 14 6 3.5157 -4.8786 -3.8236 15 6 4.2977 -4.0883 -3.0021 16 6 3.8213 -3.6925 -1.7663 17 6 -0.0262 -2.3756 -0.4066 18 7 -0.4723 -2.2369 -1.6525 19 6 -1.7660 -2.2268 -1.9222 20 17 -2.2757 -2.0411 -3.5712 21 7 -2.6821 -2.3525 -0.9849 22 6 -2.3260 -2.4962 0.2940 23 6 -3.0478 -2.6557 1.5521 24 6 -2.1244 -2.7549 2.5267 25 7 -0.8725 -2.6720 1.9902 26 1 -0.0454 -2.7181 2.4948 27 6 -0.9592 -2.5133 0.6274 28 1 -0.4850 0.8369 0.0732 29 1 2.8800 -3.5344 0.6851 30 1 1.3632 -4.4152 0.3825 31 1 0.8022 -5.1948 -1.8448 32 1 1.6466 -5.8911 -4.0506 33 1 3.8878 -5.1878 -4.7891 34 1 5.2809 -3.7802 -3.3258 35 1 4.4324 -3.0754 -1.1243 36 1 -4.1200 -2.6881 1.6777 37 1 -2.3419 -2.8858 3.5764 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166993171.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:30 Heat of formation + Delta-G solvation = 132.438468 kcal Electronic energy + Delta-G solvation = -25625.311973 eV Core-core repulsion = 22009.130369 eV Total energy + Delta-G solvation = -3616.181603 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.079 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -40.87433 -38.82209 -37.72975 -36.28547 -35.54032 -32.34975 -32.01957 -30.41484 -30.21757 -29.33671 -28.60399 -25.88338 -24.46326 -22.52616 -22.08915 -21.85536 -20.64267 -19.91813 -18.16225 -17.78319 -16.47864 -16.13420 -15.63811 -14.96526 -14.79614 -14.60076 -14.35171 -14.27225 -13.69458 -13.52478 -12.96152 -12.92345 -12.70058 -12.62212 -12.15821 -12.07783 -11.59830 -11.17273 -11.13535 -10.86835 -10.64579 -10.56554 -10.53365 -10.47259 -10.28523 -10.19138 -9.68923 -9.31173 -8.42659 -8.30926 -8.11586 -7.85301 -7.53112 -7.29855 -6.02468 -3.63076 1.78394 1.89757 1.94070 2.31952 2.45516 3.21276 3.28383 3.31923 3.35613 3.83303 4.07339 4.33830 4.73471 4.95913 5.07297 5.15569 5.27872 5.34267 5.43641 5.55821 5.61873 5.72244 5.74285 5.92692 5.96349 6.08601 6.14141 6.31470 6.39041 6.47194 6.51767 6.86562 6.92444 6.93451 7.09113 7.16888 7.38262 7.48773 7.49952 7.91638 8.08077 8.23654 8.85793 9.24379 9.40949 9.74126 10.92331 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.008918 B = 0.006513 C = 0.005355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3139.049390 B = 4297.938039 C = 5227.519934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.009 3.991 3 Si 0.925 3.075 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.289 1.289 7 C -0.267 4.267 8 H 0.090 0.910 9 N -0.539 5.539 10 C 0.186 3.814 11 C -0.088 4.088 12 C -0.098 4.098 13 C -0.123 4.123 14 C -0.131 4.131 15 C -0.127 4.127 16 C -0.098 4.098 17 C 0.566 3.434 18 N -0.516 5.516 19 C 0.364 3.636 20 Cl -0.028 7.028 21 N -0.513 5.513 22 C 0.120 3.880 23 C -0.205 4.205 24 C 0.060 3.940 25 N -0.560 5.560 26 H 0.416 0.584 27 C 0.032 3.968 28 H 0.266 0.734 29 H 0.075 0.925 30 H 0.052 0.948 31 H 0.108 0.892 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.117 0.883 36 H 0.144 0.856 37 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.959 -8.884 2.688 9.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.191 4.191 3 Si 0.754 3.246 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.216 1.216 7 C -0.394 4.394 8 H 0.108 0.892 9 N -0.256 5.256 10 C 0.061 3.939 11 C -0.090 4.090 12 C -0.117 4.117 13 C -0.141 4.141 14 C -0.149 4.149 15 C -0.145 4.145 16 C -0.117 4.117 17 C 0.320 3.680 18 N -0.239 5.239 19 C 0.067 3.933 20 Cl -0.001 7.001 21 N -0.233 5.233 22 C -0.016 4.016 23 C -0.233 4.233 24 C -0.072 4.072 25 N -0.161 5.161 26 H 0.253 0.747 27 C -0.085 4.085 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.070 0.930 31 H 0.126 0.874 32 H 0.131 0.869 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.135 0.865 36 H 0.162 0.838 37 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 1.561 -8.558 1.676 8.859 hybrid contribution 0.816 1.338 0.509 1.648 sum 2.377 -7.220 2.186 7.909 Atomic orbital electron populations 1.69190 1.05116 1.26373 1.53032 1.24923 0.95614 0.98759 0.99766 0.85859 0.78783 0.82490 0.77431 1.20074 1.21244 1.21551 1.19419 0.91825 0.81894 1.46281 0.89217 1.41572 1.02355 1.02805 1.78876 1.19956 0.95821 0.86103 0.92064 1.20736 0.93872 0.95391 0.99029 1.20887 0.98569 0.97876 0.94332 1.20997 0.95986 1.00837 0.96276 1.20971 0.95004 0.99649 0.99288 1.21030 0.99627 0.98997 0.94849 1.20956 0.95742 0.98709 0.96286 1.16566 0.84954 0.82635 0.83895 1.67873 1.14897 1.18060 1.23096 1.22007 0.85464 0.98905 0.86955 1.98323 1.90604 1.95893 1.15297 1.66961 1.38265 1.18849 0.99254 1.19580 0.90141 1.01693 0.90162 1.21183 0.98508 1.14937 0.88676 1.21757 0.83420 1.03601 0.98452 1.41306 1.07665 1.61540 1.05555 0.74692 1.19996 0.97162 1.06199 0.85104 0.92113 0.90648 0.92983 0.87388 0.86915 0.87013 0.86887 0.86451 0.83834 0.81398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.23 9.83 55.49 0.55 -23.69 16 2 C 0.01 0.23 5.40 -17.45 -0.09 0.13 16 3 Si 0.93 20.97 29.56 -169.99 -5.03 15.95 16 4 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.27 -6.45 9.78 -15.07 -0.15 -6.59 16 8 H 0.09 2.07 7.84 -52.48 -0.41 1.66 16 9 N -0.54 -11.96 2.62 -116.07 -0.30 -12.26 16 10 C 0.19 3.35 5.77 -5.19 -0.03 3.32 16 11 C -0.09 -1.57 5.46 -104.63 -0.57 -2.14 16 12 C -0.10 -1.72 9.70 -39.58 -0.38 -2.10 16 13 C -0.12 -1.94 10.05 -39.58 -0.40 -2.34 16 14 C -0.13 -1.94 10.05 -39.58 -0.40 -2.34 16 15 C -0.13 -1.94 10.05 -39.58 -0.40 -2.34 16 16 C -0.10 -1.65 9.70 -39.58 -0.38 -2.04 16 17 C 0.57 13.34 3.67 -154.69 -0.57 12.77 16 18 N -0.52 -12.94 10.15 -10.80 -0.11 -13.05 16 19 C 0.36 8.77 8.17 -91.96 -0.75 8.02 16 20 Cl -0.03 -0.59 29.25 -51.86 -1.52 -2.11 16 21 N -0.51 -12.20 10.46 -8.55 -0.09 -12.29 16 22 C 0.12 2.66 7.57 -83.13 -0.63 2.03 16 23 C -0.21 -3.61 11.07 -37.79 -0.42 -4.03 16 24 C 0.06 0.89 11.82 -16.78 -0.20 0.69 16 25 N -0.56 -9.74 6.05 -10.49 -0.06 -9.80 16 26 H 0.42 6.41 8.96 -40.82 -0.37 6.04 16 27 C 0.03 0.69 6.24 -83.76 -0.52 0.17 16 28 H 0.27 7.37 8.32 -40.82 -0.34 7.03 16 29 H 0.08 1.21 7.98 -51.93 -0.41 0.80 16 30 H 0.05 0.87 7.99 -51.93 -0.41 0.45 16 31 H 0.11 1.91 8.06 -52.48 -0.42 1.49 16 32 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 33 H 0.11 1.37 8.06 -52.49 -0.42 0.94 16 34 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 35 H 0.12 1.86 8.06 -52.49 -0.42 1.44 16 36 H 0.14 2.16 8.06 -52.49 -0.42 1.74 16 37 H 0.17 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 341.24 15.07 5.14 5.14 Total: -1.00 -31.14 341.24 -11.01 -42.16 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -3.70 Total: 6.75 kcal Atomic # 6 Polarization: 9.10 SS G_CDS: -5.89 Total: 3.21 kcal Atomic # 7 Polarization: -71.07 SS G_CDS: -0.02 Total: -71.09 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.95 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.52 Total: -2.11 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.14 -11.01 -42.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166993171.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.594 kcal (2) G-P(sol) polarization free energy of solvation -31.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds