Wall clock time and date at job start Tue Mar 31 2020 14:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31532 * 1 3 3 Si 1.86793 * 120.00334 * 2 1 4 4 H 1.48494 * 109.47544 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47294 * 300.00044 * 3 2 1 6 6 H 1.48506 * 109.47341 * 59.99852 * 3 2 1 7 7 C 1.38857 * 119.99494 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99200 * 186.67596 * 7 2 1 9 9 N 1.36877 * 120.00329 * 6.68067 * 7 2 1 10 10 C 1.46501 * 120.00074 * 186.20030 * 9 7 2 11 11 C 1.50697 * 109.47201 * 270.00046 * 10 9 7 12 12 C 1.38232 * 119.99990 * 269.72683 * 11 10 9 13 13 C 1.38236 * 120.00419 * 179.76339 * 12 11 10 14 14 C 1.38247 * 119.99516 * 0.51016 * 13 12 11 15 15 C 1.38233 * 119.99784 * 359.74397 * 14 13 12 16 16 C 1.38234 * 120.00132 * 359.97438 * 15 14 13 17 17 C 1.38439 * 119.99890 * 6.19986 * 9 7 2 18 18 N 1.33063 * 120.70458 * 83.47281 * 17 9 7 19 19 C 1.32146 * 121.33724 * 180.02562 * 18 17 9 20 20 Cl 1.73597 * 118.82277 * 179.97438 * 19 18 17 21 21 N 1.31668 * 122.35207 * 359.97438 * 19 18 17 22 22 C 1.33522 * 120.43648 * 0.04199 * 21 19 18 23 23 C 1.45922 * 134.88632 * 179.97438 * 22 21 19 24 24 C 1.34617 * 107.03753 * 179.97438 * 23 22 21 25 25 N 1.36448 * 109.88882 * 359.97438 * 24 23 22 26 26 H 0.96999 * 125.09402 * 180.02562 * 25 24 23 27 27 C 1.37471 * 109.81174 * 0.02562 * 25 24 23 28 28 H 0.97004 * 119.99968 * 354.99782 * 1 2 3 29 29 H 1.09003 * 109.47165 * 29.99911 * 10 9 7 30 30 H 1.08996 * 109.47339 * 149.99894 * 10 9 7 31 31 H 1.08004 * 119.99989 * 359.97438 * 12 11 10 32 32 H 1.07991 * 120.00648 * 180.22984 * 13 12 11 33 33 H 1.07999 * 119.99753 * 179.72720 * 14 13 12 34 34 H 1.08001 * 120.00012 * 179.97438 * 15 14 13 35 35 H 1.07999 * 119.99935 * 179.97438 * 16 15 14 36 36 H 1.08001 * 126.47926 * 359.97438 * 23 22 21 37 37 H 1.08001 * 125.05844 * 180.26858 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2494 1.6176 0.0000 4 1 3.7093 1.3463 -0.0006 5 1 1.8907 2.3964 -1.2125 6 1 1.8907 2.3964 1.2125 7 6 2.0095 -1.2026 -0.0005 8 1 3.0840 -1.2058 0.1082 9 7 1.3320 -2.3839 -0.1390 10 6 2.0443 -3.6570 -0.0039 11 6 2.5633 -4.0877 -1.3515 12 6 1.7834 -4.8823 -2.1707 13 6 2.2574 -5.2734 -3.4090 14 6 3.5157 -4.8786 -3.8236 15 6 4.2977 -4.0883 -3.0021 16 6 3.8213 -3.6925 -1.7663 17 6 -0.0262 -2.3756 -0.4066 18 7 -0.4723 -2.2369 -1.6525 19 6 -1.7660 -2.2268 -1.9222 20 17 -2.2757 -2.0411 -3.5712 21 7 -2.6821 -2.3525 -0.9849 22 6 -2.3260 -2.4962 0.2940 23 6 -3.0478 -2.6557 1.5521 24 6 -2.1244 -2.7549 2.5267 25 7 -0.8725 -2.6720 1.9902 26 1 -0.0454 -2.7181 2.4948 27 6 -0.9592 -2.5133 0.6274 28 1 -0.4850 0.8369 0.0732 29 1 2.8800 -3.5344 0.6851 30 1 1.3632 -4.4152 0.3825 31 1 0.8022 -5.1948 -1.8448 32 1 1.6466 -5.8911 -4.0506 33 1 3.8878 -5.1878 -4.7891 34 1 5.2809 -3.7802 -3.3258 35 1 4.4324 -3.0754 -1.1243 36 1 -4.1200 -2.6881 1.6777 37 1 -2.3419 -2.8858 3.5764 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166993171.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:28 Heat of formation + Delta-G solvation = 115.413392 kcal Electronic energy + Delta-G solvation = -25626.050235 eV Core-core repulsion = 22009.130369 eV Total energy + Delta-G solvation = -3616.919866 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.079 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.40645 -40.12320 -39.27734 -37.91989 -37.20007 -33.95728 -33.72113 -31.75163 -31.65917 -30.77101 -30.17596 -27.46425 -26.09251 -24.17439 -23.46109 -23.30917 -21.96965 -21.36047 -19.74891 -19.43885 -17.91322 -17.58752 -17.22112 -16.72574 -16.11791 -15.99447 -15.95887 -15.75691 -15.33943 -15.14111 -14.25301 -14.24033 -14.18488 -13.89095 -13.57230 -13.46944 -13.16313 -12.97201 -12.67333 -12.41303 -12.30092 -12.18774 -12.17188 -12.03599 -11.89617 -11.74160 -11.37209 -11.09237 -9.88842 -9.68388 -9.61218 -9.35322 -9.22062 -8.88501 -7.88156 -5.51114 0.28845 0.58511 0.63327 0.66191 0.77255 1.40295 1.46212 1.52802 1.94570 2.35976 2.46665 2.87803 3.13860 3.28346 3.34647 3.65180 4.01268 4.04755 4.12329 4.24997 4.33603 4.37811 4.45730 4.51522 4.69524 4.73323 4.84903 4.90385 4.94799 5.23134 5.26571 5.42941 5.50164 5.64857 5.68339 5.70335 5.85273 5.92128 6.12782 6.25644 6.56756 6.78513 6.99747 7.50925 7.68459 7.92544 8.99760 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.008918 B = 0.006513 C = 0.005355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3139.049390 B = 4297.938039 C = 5227.519934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.042 4.042 3 Si 0.975 3.025 4 H -0.258 1.258 5 H -0.310 1.310 6 H -0.291 1.291 7 C -0.253 4.253 8 H 0.100 0.900 9 N -0.546 5.546 10 C 0.185 3.815 11 C -0.106 4.106 12 C -0.116 4.116 13 C -0.131 4.131 14 C -0.129 4.129 15 C -0.129 4.129 16 C -0.112 4.112 17 C 0.553 3.447 18 N -0.546 5.546 19 C 0.341 3.659 20 Cl -0.016 7.016 21 N -0.529 5.529 22 C 0.089 3.911 23 C -0.230 4.230 24 C 0.099 3.901 25 N -0.555 5.555 26 H 0.426 0.574 27 C 0.014 3.986 28 H 0.248 0.752 29 H 0.094 0.906 30 H 0.058 0.942 31 H 0.095 0.905 32 H 0.130 0.870 33 H 0.143 0.857 34 H 0.141 0.859 35 H 0.124 0.876 36 H 0.167 0.833 37 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.131 -9.762 3.967 10.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.238 4.238 3 Si 0.805 3.195 4 H -0.182 1.182 5 H -0.238 1.238 6 H -0.218 1.218 7 C -0.382 4.382 8 H 0.118 0.882 9 N -0.264 5.264 10 C 0.061 3.939 11 C -0.108 4.108 12 C -0.135 4.135 13 C -0.149 4.149 14 C -0.147 4.147 15 C -0.147 4.147 16 C -0.131 4.131 17 C 0.308 3.692 18 N -0.270 5.270 19 C 0.044 3.956 20 Cl 0.011 6.989 21 N -0.249 5.249 22 C -0.046 4.046 23 C -0.256 4.256 24 C -0.033 4.033 25 N -0.156 5.156 26 H 0.265 0.735 27 C -0.102 4.102 28 H 0.060 0.940 29 H 0.112 0.888 30 H 0.077 0.923 31 H 0.113 0.887 32 H 0.148 0.852 33 H 0.161 0.839 34 H 0.159 0.841 35 H 0.142 0.858 36 H 0.184 0.816 37 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 2.778 -9.480 2.976 10.318 hybrid contribution 0.468 1.489 0.138 1.567 sum 3.246 -7.991 3.115 9.170 Atomic orbital electron populations 1.69443 1.06082 1.25328 1.55320 1.25524 0.96127 1.01101 1.01025 0.85057 0.78834 0.79672 0.75958 1.18211 1.23820 1.21785 1.19705 0.92263 0.82475 1.43709 0.88209 1.41720 1.02253 1.03523 1.78900 1.20124 0.96197 0.84743 0.92846 1.20740 0.94691 0.96356 0.99002 1.20931 0.98259 0.98834 0.95454 1.21289 0.96857 1.00912 0.95844 1.21363 0.94321 0.98662 1.00388 1.21398 1.00819 0.98309 0.94138 1.21157 0.95534 0.99086 0.97317 1.16801 0.85627 0.82681 0.84076 1.67804 1.15435 1.19369 1.24396 1.22250 0.85636 0.99907 0.87815 1.98300 1.90446 1.95889 1.14233 1.67001 1.38385 1.19381 1.00165 1.20400 0.91575 1.01815 0.90849 1.21609 1.00229 1.16559 0.87223 1.22696 0.81339 0.98827 1.00486 1.41445 1.09280 1.60766 1.04144 0.73507 1.19954 0.96727 1.06800 0.86749 0.94033 0.88831 0.92319 0.88709 0.85164 0.83916 0.84136 0.85811 0.81596 0.75293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.61 9.83 21.65 0.21 -50.40 16 2 C -0.04 -2.15 5.40 84.89 0.46 -1.69 16 3 Si 0.98 43.34 29.56 68.60 2.03 45.37 16 4 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 5 H -0.31 -14.88 7.11 99.48 0.71 -14.17 16 6 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 7 C -0.25 -12.11 9.78 84.05 0.82 -11.29 16 8 H 0.10 4.46 7.84 -2.91 -0.02 4.44 16 9 N -0.55 -24.17 2.62 -521.14 -1.36 -25.54 16 10 C 0.18 6.57 5.77 85.63 0.49 7.07 16 11 C -0.11 -3.74 5.46 -19.87 -0.11 -3.85 16 12 C -0.12 -4.09 9.70 22.27 0.22 -3.88 16 13 C -0.13 -4.02 10.05 22.27 0.22 -3.79 16 14 C -0.13 -3.54 10.05 22.27 0.22 -3.32 16 15 C -0.13 -3.64 10.05 22.27 0.22 -3.41 16 16 C -0.11 -3.63 9.70 22.27 0.22 -3.42 16 17 C 0.55 26.42 3.67 133.26 0.49 26.91 16 18 N -0.55 -28.15 10.15 -188.07 -1.91 -30.06 16 19 C 0.34 16.97 8.17 180.82 1.48 18.45 16 20 Cl -0.02 -0.68 29.25 -2.72 -0.08 -0.76 16 21 N -0.53 -25.75 10.46 -180.97 -1.89 -27.65 16 22 C 0.09 3.98 7.57 41.48 0.31 4.30 16 23 C -0.23 -7.63 11.07 23.43 0.26 -7.37 16 24 C 0.10 2.57 11.82 83.14 0.98 3.55 16 25 N -0.55 -18.22 6.05 -187.12 -1.13 -19.36 16 26 H 0.43 12.17 8.96 -92.71 -0.83 11.34 16 27 C 0.01 0.63 6.24 39.28 0.25 0.87 16 28 H 0.25 14.19 8.32 -92.71 -0.77 13.42 16 29 H 0.09 2.89 7.98 -2.39 -0.02 2.88 16 30 H 0.06 1.96 7.99 -2.39 -0.02 1.94 16 31 H 0.09 3.50 8.06 -2.91 -0.02 3.47 16 32 H 0.13 3.41 8.06 -2.92 -0.02 3.38 16 33 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 34 H 0.14 3.13 8.06 -2.91 -0.02 3.10 16 35 H 0.12 3.74 8.06 -2.91 -0.02 3.71 16 36 H 0.17 4.61 8.06 -2.91 -0.02 4.59 16 37 H 0.23 3.04 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -69.88 341.24 2.69 -67.19 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: 0.29 Total: 22.08 kcal Atomic # 6 Polarization: 12.59 SS G_CDS: 6.54 Total: 19.13 kcal Atomic # 7 Polarization: -146.91 SS G_CDS: -6.09 Total: -153.00 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -0.08 Total: -0.76 kcal Total: -69.88 2.69 -67.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166993171.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.599 kcal (2) G-P(sol) polarization free energy of solvation -69.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds