Wall clock time and date at job start Tue Mar 31 2020 14:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39552 * 120.02109 * 92.16988 * 3 2 1 5 5 N 1.32018 * 119.96112 * 180.02562 * 4 3 2 6 6 C 1.32783 * 120.00933 * 0.02562 * 5 4 3 7 7 N 1.38567 * 119.97671 * 179.97438 * 6 5 4 8 8 C 1.46499 * 120.00274 * 5.00159 * 7 6 5 9 9 C 1.50700 * 109.47088 * 269.99826 * 8 7 6 10 10 H 1.08000 * 120.00085 * 0.02562 * 9 8 7 11 11 C 1.37869 * 120.00072 * 180.02562 * 9 8 7 12 12 N 1.31522 * 120.00026 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00063 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47360 * 60.00146 * 13 11 9 15 15 H 1.48507 * 109.46985 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47417 * 299.99857 * 13 11 9 17 17 C 1.46502 * 119.99713 * 184.99940 * 7 6 5 18 18 C 1.50701 * 109.47068 * 270.00262 * 17 7 6 19 19 C 1.38246 * 119.98821 * 90.00337 * 18 17 7 20 20 C 1.38215 * 120.01338 * 180.27925 * 19 18 17 21 21 C 1.38358 * 119.98339 * 359.46462 * 20 19 18 22 22 Cl 1.73596 * 120.00861 * 180.24067 * 21 20 19 23 23 C 1.38349 * 119.97593 * 0.51073 * 21 20 19 24 24 C 1.38212 * 119.98495 * 359.74279 * 23 21 20 25 25 C 1.39711 * 120.03839 * 0.25271 * 6 5 4 26 26 N 1.31575 * 120.03974 * 359.47581 * 25 6 5 27 27 H 1.07999 * 120.02231 * 359.97438 * 4 3 2 28 28 H 1.08998 * 109.47021 * 30.00012 * 8 7 6 29 29 H 1.08999 * 109.46879 * 149.99779 * 8 7 6 30 30 H 0.97000 * 120.00157 * 179.97438 * 12 11 9 31 31 H 1.08991 * 109.47102 * 150.00301 * 17 7 6 32 32 H 1.09000 * 109.47297 * 29.99828 * 17 7 6 33 33 H 1.08002 * 119.98964 * 359.97438 * 19 18 17 34 34 H 1.07998 * 120.00901 * 179.70367 * 20 19 18 35 35 H 1.08000 * 120.00704 * 179.72657 * 23 21 20 36 36 H 1.08004 * 119.99489 * 179.97438 * 24 23 21 37 37 H 1.08004 * 119.97595 * 179.72135 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2662 0.0467 -1.2074 5 7 4.5864 0.0467 -1.2061 6 6 5.2493 0.0024 -0.0564 7 7 6.6350 0.0020 -0.0558 8 6 7.3681 0.1607 -1.3142 9 6 7.6192 -1.1946 -1.9236 10 1 7.2673 -2.0850 -1.4238 11 6 8.2979 -1.2977 -3.1192 12 7 8.7259 -0.2134 -3.7281 13 14 8.6097 -2.9776 -3.8743 14 1 7.3123 -3.6498 -4.1392 15 1 9.3539 -2.8168 -5.1493 16 1 9.4114 -3.8018 -2.9344 17 6 7.3668 -0.1572 1.2033 18 6 7.6181 1.1979 1.8130 19 6 6.6960 1.7445 2.6861 20 6 6.9232 2.9897 3.2411 21 6 8.0790 3.6844 2.9313 22 17 8.3679 5.2458 3.6329 23 6 9.0016 3.1367 2.0580 24 6 8.7708 1.8936 1.4995 25 6 4.5505 -0.0496 1.1523 26 7 3.2348 -0.0443 1.1532 27 1 2.7269 0.0815 -2.1425 28 1 6.7796 0.7658 -2.0037 29 1 8.3206 0.6538 -1.1200 30 1 9.2038 -0.2860 -4.5691 31 1 8.3191 -0.6509 1.0101 32 1 6.7772 -0.7619 1.8924 33 1 5.7957 1.2004 2.9307 34 1 6.2006 3.4188 3.9194 35 1 9.9018 3.6804 1.8124 36 1 9.4907 1.4661 0.8174 37 1 5.0907 -0.0901 2.0866 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167135217.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:14 Heat of formation + Delta-G solvation = 110.918650 kcal Electronic energy + Delta-G solvation = -24114.871094 eV Core-core repulsion = 20497.756321 eV Total energy + Delta-G solvation = -3617.114773 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.079 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.90816 -39.51202 -37.21493 -36.51067 -36.00395 -33.93361 -32.99527 -31.65211 -31.20104 -30.38320 -27.77692 -26.11056 -24.65383 -23.77663 -22.87149 -22.02793 -21.08417 -19.16535 -17.51892 -17.44344 -17.02972 -16.49985 -15.67103 -15.49364 -14.96956 -14.92114 -14.68677 -14.13560 -13.88508 -13.78286 -13.52793 -13.40241 -13.11084 -12.75864 -12.59669 -12.53938 -12.10280 -11.87894 -11.61974 -11.49208 -11.35339 -11.16814 -11.14033 -10.95683 -10.87980 -10.68490 -10.31896 -10.13874 -9.40971 -9.10576 -8.81977 -8.71567 -8.59103 -7.33752 -6.20520 -4.27649 0.86441 1.00590 1.22198 1.40771 2.01832 2.71800 3.10693 3.14416 3.21203 3.27146 3.30363 3.66748 3.85449 4.14875 4.29237 4.50455 4.62791 4.73175 4.73815 4.82157 4.87808 5.07400 5.13424 5.24308 5.33816 5.45083 5.53606 5.64004 5.77030 5.89307 6.10795 6.14675 6.18967 6.45100 6.61174 6.71616 7.13860 7.30823 7.46761 7.62099 7.73305 7.83008 7.99238 8.22170 8.75173 9.38085 10.85928 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.007233 B = 0.004780 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3870.269961 B = 5856.266319 C = 9117.319626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C 0.293 3.707 3 C 0.014 3.986 4 C 0.177 3.823 5 N -0.479 5.479 6 C 0.396 3.604 7 N -0.550 5.550 8 C 0.249 3.751 9 C -0.530 4.530 10 H 0.058 0.942 11 C 0.067 3.933 12 N -0.891 5.891 13 Si 0.897 3.103 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.277 1.277 17 C 0.153 3.847 18 C -0.099 4.099 19 C -0.099 4.099 20 C -0.113 4.113 21 C -0.033 4.033 22 Cl -0.079 7.079 23 C -0.111 4.111 24 C -0.082 4.082 25 C -0.025 4.025 26 N -0.369 5.369 27 H 0.171 0.829 28 H 0.052 0.948 29 H 0.037 0.963 30 H 0.266 0.734 31 H 0.106 0.894 32 H 0.084 0.916 33 H 0.134 0.866 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.139 0.861 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.465 5.049 12.403 13.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.105 5.105 2 C -0.023 4.023 3 C -0.126 4.126 4 C 0.009 3.991 5 N -0.199 5.199 6 C 0.153 3.847 7 N -0.252 5.252 8 C 0.130 3.870 9 C -0.568 4.568 10 H 0.076 0.924 11 C -0.136 4.136 12 N -0.529 5.529 13 Si 0.724 3.276 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.202 1.202 17 C 0.029 3.971 18 C -0.101 4.101 19 C -0.117 4.117 20 C -0.131 4.131 21 C -0.060 4.060 22 Cl -0.050 7.050 23 C -0.130 4.130 24 C -0.100 4.100 25 C -0.201 4.201 26 N -0.083 5.083 27 H 0.188 0.812 28 H 0.070 0.930 29 H 0.054 0.946 30 H 0.075 0.925 31 H 0.124 0.876 32 H 0.103 0.897 33 H 0.151 0.849 34 H 0.150 0.850 35 H 0.151 0.849 36 H 0.157 0.843 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -0.839 5.248 12.251 13.354 hybrid contribution 0.748 -0.692 -0.496 1.133 sum -0.091 4.557 11.755 12.608 Atomic orbital electron populations 1.81201 1.11622 1.10374 1.07329 1.24772 0.91346 0.92844 0.93349 1.16798 0.86662 1.17483 0.91701 1.23494 0.89579 0.88578 0.97485 1.68423 1.07099 1.17649 1.26757 1.19673 0.87186 0.87695 0.90157 1.47407 1.00486 1.67959 1.09376 1.19536 0.91332 0.97871 0.78258 1.21286 1.36626 0.92321 1.06600 0.92389 1.24875 0.95344 0.96858 0.96522 1.69905 1.37870 1.27747 1.17422 0.86580 0.78460 0.83980 0.78541 1.20134 1.21162 1.20246 1.20542 0.99122 0.92348 0.85063 1.20491 0.94745 0.98005 0.96814 1.21184 0.98950 0.95004 0.96575 1.21003 0.96150 0.94960 1.01015 1.20958 0.97288 0.88115 0.99654 1.98362 1.96091 1.27205 1.83335 1.21074 0.99226 0.96072 0.96613 1.21173 0.97275 0.93581 0.98001 1.23110 0.89613 1.09502 0.97860 1.67927 1.08320 1.04167 1.27871 0.81195 0.93047 0.94553 0.92474 0.87595 0.89736 0.84873 0.85048 0.84924 0.84331 0.81510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -6.85 18.54 41.84 0.78 -6.08 16 2 C 0.29 4.35 15.56 -22.47 -0.35 4.00 16 3 C 0.01 0.21 6.59 -84.82 -0.56 -0.35 16 4 C 0.18 2.62 10.92 -16.98 -0.19 2.44 16 5 N -0.48 -8.64 9.31 -11.93 -0.11 -8.75 16 6 C 0.40 6.62 7.36 -154.90 -1.14 5.48 16 7 N -0.55 -9.33 2.54 -176.43 -0.45 -9.78 16 8 C 0.25 5.37 5.14 -5.19 -0.03 5.35 16 9 C -0.53 -12.89 9.39 -34.44 -0.32 -13.21 16 10 H 0.06 1.43 7.81 -52.49 -0.41 1.02 16 11 C 0.07 1.70 5.46 -17.82 -0.10 1.61 16 12 N -0.89 -23.81 13.29 55.43 0.74 -23.08 16 13 Si 0.90 19.95 29.54 -169.99 -5.02 14.93 16 14 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 15 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 16 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 17 C 0.15 1.95 5.34 -5.19 -0.03 1.93 16 18 C -0.10 -1.18 5.46 -104.62 -0.57 -1.75 16 19 C -0.10 -1.06 9.20 -39.59 -0.36 -1.43 16 20 C -0.11 -1.21 9.83 -39.55 -0.39 -1.60 16 21 C -0.03 -0.38 6.32 -39.50 -0.25 -0.63 16 22 Cl -0.08 -0.83 28.96 -51.86 -1.50 -2.34 16 23 C -0.11 -1.26 9.83 -39.55 -0.39 -1.65 16 24 C -0.08 -0.98 9.70 -39.59 -0.38 -1.37 16 25 C -0.03 -0.35 9.65 -17.11 -0.17 -0.52 16 26 N -0.37 -5.49 10.41 -10.72 -0.11 -5.60 16 27 H 0.17 2.00 8.06 -52.49 -0.42 1.58 16 28 H 0.05 1.26 7.46 -51.93 -0.39 0.88 16 29 H 0.04 0.81 8.07 -51.93 -0.42 0.39 16 30 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 31 H 0.11 1.36 8.01 -51.93 -0.42 0.95 16 32 H 0.08 0.87 6.32 -51.93 -0.33 0.54 16 33 H 0.13 1.23 5.50 -52.49 -0.29 0.95 16 34 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 35 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 36 H 0.14 1.65 8.06 -52.48 -0.42 1.23 16 37 H 0.17 1.84 3.93 -52.48 -0.21 1.63 16 LS Contribution 347.29 15.07 5.23 5.23 Total: -1.00 -28.31 347.29 -8.95 -37.26 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -3.28 Total: -0.10 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: -5.22 Total: -1.71 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: 0.84 Total: -53.28 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.50 Total: -2.34 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.31 -8.95 -37.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167135217.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.183 kcal (2) G-P(sol) polarization free energy of solvation -28.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds