Wall clock time and date at job start Tue Mar 31 2020 14:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39552 * 120.02109 * 92.16988 * 3 2 1 5 5 N 1.32018 * 119.96112 * 180.02562 * 4 3 2 6 6 C 1.32783 * 120.00933 * 0.02562 * 5 4 3 7 7 N 1.38567 * 119.97671 * 179.97438 * 6 5 4 8 8 C 1.46499 * 120.00274 * 5.00159 * 7 6 5 9 9 C 1.50700 * 109.47088 * 269.99826 * 8 7 6 10 10 H 1.08000 * 120.00085 * 0.02562 * 9 8 7 11 11 C 1.37869 * 120.00072 * 180.02562 * 9 8 7 12 12 N 1.31522 * 120.00026 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00063 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47360 * 60.00146 * 13 11 9 15 15 H 1.48507 * 109.46985 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47417 * 299.99857 * 13 11 9 17 17 C 1.46502 * 119.99713 * 184.99940 * 7 6 5 18 18 C 1.50701 * 109.47068 * 270.00262 * 17 7 6 19 19 C 1.38246 * 119.98821 * 90.00337 * 18 17 7 20 20 C 1.38215 * 120.01338 * 180.27925 * 19 18 17 21 21 C 1.38358 * 119.98339 * 359.46462 * 20 19 18 22 22 Cl 1.73596 * 120.00861 * 180.24067 * 21 20 19 23 23 C 1.38349 * 119.97593 * 0.51073 * 21 20 19 24 24 C 1.38212 * 119.98495 * 359.74279 * 23 21 20 25 25 C 1.39711 * 120.03839 * 0.25271 * 6 5 4 26 26 N 1.31575 * 120.03974 * 359.47581 * 25 6 5 27 27 H 1.07999 * 120.02231 * 359.97438 * 4 3 2 28 28 H 1.08998 * 109.47021 * 30.00012 * 8 7 6 29 29 H 1.08999 * 109.46879 * 149.99779 * 8 7 6 30 30 H 0.97000 * 120.00157 * 179.97438 * 12 11 9 31 31 H 1.08991 * 109.47102 * 150.00301 * 17 7 6 32 32 H 1.09000 * 109.47297 * 29.99828 * 17 7 6 33 33 H 1.08002 * 119.98964 * 359.97438 * 19 18 17 34 34 H 1.07998 * 120.00901 * 179.70367 * 20 19 18 35 35 H 1.08000 * 120.00704 * 179.72657 * 23 21 20 36 36 H 1.08004 * 119.99489 * 179.97438 * 24 23 21 37 37 H 1.08004 * 119.97595 * 179.72135 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2662 0.0467 -1.2074 5 7 4.5864 0.0467 -1.2061 6 6 5.2493 0.0024 -0.0564 7 7 6.6350 0.0020 -0.0558 8 6 7.3681 0.1607 -1.3142 9 6 7.6192 -1.1946 -1.9236 10 1 7.2673 -2.0850 -1.4238 11 6 8.2979 -1.2977 -3.1192 12 7 8.7259 -0.2134 -3.7281 13 14 8.6097 -2.9776 -3.8743 14 1 7.3123 -3.6498 -4.1392 15 1 9.3539 -2.8168 -5.1493 16 1 9.4114 -3.8018 -2.9344 17 6 7.3668 -0.1572 1.2033 18 6 7.6181 1.1979 1.8130 19 6 6.6960 1.7445 2.6861 20 6 6.9232 2.9897 3.2411 21 6 8.0790 3.6844 2.9313 22 17 8.3679 5.2458 3.6329 23 6 9.0016 3.1367 2.0580 24 6 8.7708 1.8936 1.4995 25 6 4.5505 -0.0496 1.1523 26 7 3.2348 -0.0443 1.1532 27 1 2.7269 0.0815 -2.1425 28 1 6.7796 0.7658 -2.0037 29 1 8.3206 0.6538 -1.1200 30 1 9.2038 -0.2860 -4.5691 31 1 8.3191 -0.6509 1.0101 32 1 6.7772 -0.7619 1.8924 33 1 5.7957 1.2004 2.9307 34 1 6.2006 3.4188 3.9194 35 1 9.9018 3.6804 1.8124 36 1 9.4907 1.4661 0.8174 37 1 5.0907 -0.0901 2.0866 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167135217.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:14 Heat of formation + Delta-G solvation = 97.545558 kcal Electronic energy + Delta-G solvation = -24115.450995 eV Core-core repulsion = 20497.756321 eV Total energy + Delta-G solvation = -3617.694674 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.079 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.11382 -40.43322 -38.38872 -37.51621 -37.16639 -35.13790 -34.82139 -32.68017 -32.14828 -31.64701 -29.28807 -27.24576 -26.08752 -25.07411 -23.75550 -23.37414 -22.14498 -20.37697 -18.79085 -18.59399 -18.48851 -17.82523 -16.66383 -16.59360 -16.48265 -16.11079 -15.80082 -15.38160 -15.14154 -14.93928 -14.42395 -14.36460 -14.28760 -14.15949 -13.97416 -13.78031 -13.36150 -13.20571 -12.92882 -12.73638 -12.62553 -12.38494 -12.32024 -12.24703 -12.23196 -12.04924 -11.72048 -11.70817 -10.87978 -10.54302 -10.03021 -9.97093 -9.61675 -8.68800 -8.09394 -6.25635 -0.33303 0.09297 0.21871 0.36611 1.16151 1.44171 1.46499 1.52049 1.52512 1.90656 1.97096 2.44839 2.61263 2.76569 2.96333 3.18228 3.42367 3.47290 3.66514 3.80434 3.83245 3.98757 4.13892 4.15870 4.35379 4.52919 4.58795 4.68859 4.82961 4.95680 5.02410 5.14094 5.23266 5.28699 5.37942 5.54849 5.72457 5.84198 5.91986 6.12808 6.18165 6.37141 6.56585 6.82637 7.02121 7.43519 8.91991 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.007233 B = 0.004780 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3870.269961 B = 5856.266319 C = 9117.319626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C 0.309 3.691 3 C 0.020 3.980 4 C 0.178 3.822 5 N -0.522 5.522 6 C 0.383 3.617 7 N -0.557 5.557 8 C 0.270 3.730 9 C -0.528 4.528 10 H 0.054 0.946 11 C 0.020 3.980 12 N -0.924 5.924 13 Si 0.952 3.048 14 H -0.278 1.278 15 H -0.287 1.287 16 H -0.267 1.267 17 C 0.151 3.849 18 C -0.105 4.105 19 C -0.095 4.095 20 C -0.114 4.114 21 C -0.041 4.041 22 Cl -0.074 7.074 23 C -0.118 4.118 24 C -0.095 4.095 25 C -0.005 4.005 26 N -0.374 5.374 27 H 0.194 0.806 28 H 0.017 0.983 29 H 0.026 0.974 30 H 0.264 0.736 31 H 0.100 0.900 32 H 0.116 0.884 33 H 0.153 0.847 34 H 0.151 0.849 35 H 0.141 0.859 36 H 0.131 0.869 37 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.275 4.514 14.059 14.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.124 5.124 2 C -0.007 4.007 3 C -0.121 4.121 4 C 0.012 3.988 5 N -0.244 5.244 6 C 0.140 3.860 7 N -0.260 5.260 8 C 0.149 3.851 9 C -0.567 4.567 10 H 0.072 0.928 11 C -0.180 4.180 12 N -0.564 5.564 13 Si 0.778 3.222 14 H -0.204 1.204 15 H -0.213 1.213 16 H -0.192 1.192 17 C 0.029 3.971 18 C -0.106 4.106 19 C -0.113 4.113 20 C -0.132 4.132 21 C -0.068 4.068 22 Cl -0.045 7.045 23 C -0.136 4.136 24 C -0.113 4.113 25 C -0.180 4.180 26 N -0.088 5.088 27 H 0.211 0.789 28 H 0.035 0.965 29 H 0.044 0.956 30 H 0.073 0.927 31 H 0.119 0.881 32 H 0.134 0.866 33 H 0.171 0.829 34 H 0.168 0.832 35 H 0.159 0.841 36 H 0.149 0.851 37 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -1.613 4.706 13.940 14.801 hybrid contribution 0.934 -0.471 -0.959 1.419 sum -0.680 4.235 12.981 13.671 Atomic orbital electron populations 1.81225 1.12151 1.11019 1.08012 1.24649 0.91108 0.92225 0.92691 1.16791 0.86469 1.17003 0.91791 1.23808 0.88691 0.87727 0.98603 1.68377 1.08641 1.19096 1.28267 1.19959 0.87033 0.88090 0.90920 1.47216 1.00732 1.68948 1.09139 1.18907 0.90583 0.95810 0.79828 1.21573 1.35416 0.93330 1.06411 0.92777 1.25576 0.95565 0.99612 0.97241 1.70013 1.39106 1.29471 1.17823 0.85710 0.78096 0.80582 0.77837 1.20399 1.21275 1.19178 1.20740 0.99104 0.93377 0.83855 1.20432 0.95091 0.97700 0.97406 1.21356 0.99084 0.95059 0.95838 1.21264 0.96170 0.94847 1.00963 1.21102 0.97563 0.88454 0.99652 1.98363 1.96102 1.26833 1.83186 1.21195 0.99798 0.95951 0.96692 1.21215 0.97655 0.94130 0.98345 1.23452 0.89146 1.07513 0.97914 1.68002 1.08541 1.04505 1.27785 0.78896 0.96501 0.95593 0.92696 0.88139 0.86641 0.82948 0.83173 0.84093 0.85122 0.78318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -13.59 18.54 19.00 0.35 -13.24 16 2 C 0.31 8.61 15.56 88.33 1.37 9.98 16 3 C 0.02 0.54 6.59 40.49 0.27 0.81 16 4 C 0.18 5.07 10.92 84.98 0.93 5.99 16 5 N -0.52 -18.59 9.31 -191.65 -1.78 -20.38 16 6 C 0.38 12.32 7.36 133.24 0.98 13.30 16 7 N -0.56 -18.57 2.54 -712.11 -1.81 -20.38 16 8 C 0.27 11.90 5.14 85.63 0.44 12.34 16 9 C -0.53 -25.94 9.39 25.60 0.24 -25.70 16 10 H 0.05 2.65 7.81 -2.91 -0.02 2.62 16 11 C 0.02 1.00 5.46 84.65 0.46 1.47 16 12 N -0.92 -50.43 13.29 21.45 0.28 -50.15 16 13 Si 0.95 40.98 29.54 68.60 2.03 43.00 16 14 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 15 H -0.29 -12.32 7.11 99.48 0.71 -11.61 16 16 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 17 C 0.15 3.64 5.34 85.63 0.46 4.10 16 18 C -0.10 -2.35 5.46 -19.86 -0.11 -2.46 16 19 C -0.09 -1.80 9.20 22.27 0.20 -1.60 16 20 C -0.11 -2.17 9.83 22.29 0.22 -1.95 16 21 C -0.04 -0.87 6.32 22.32 0.14 -0.73 16 22 Cl -0.07 -1.46 28.96 -2.72 -0.08 -1.53 16 23 C -0.12 -2.61 9.83 22.29 0.22 -2.39 16 24 C -0.09 -2.26 9.70 22.26 0.22 -2.04 16 25 C 0.00 -0.13 9.65 85.09 0.82 0.69 16 26 N -0.37 -10.14 10.41 -187.83 -1.96 -12.10 16 27 H 0.19 4.31 8.06 -2.91 -0.02 4.28 16 28 H 0.02 0.86 7.46 -2.39 -0.02 0.84 16 29 H 0.03 1.19 8.07 -2.39 -0.02 1.18 16 30 H 0.26 13.84 8.31 -92.71 -0.77 13.07 16 31 H 0.10 2.52 8.01 -2.39 -0.02 2.50 16 32 H 0.12 2.02 6.32 -2.39 -0.02 2.00 16 33 H 0.15 2.22 5.50 -2.91 -0.02 2.20 16 34 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 35 H 0.14 2.76 8.06 -2.91 -0.02 2.73 16 36 H 0.13 3.24 8.06 -2.91 -0.02 3.22 16 37 H 0.20 3.57 3.93 -2.91 -0.01 3.56 16 Total: -1.00 -60.68 347.29 5.03 -55.65 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: 1.14 Total: 7.29 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: 6.86 Total: 11.82 kcal Atomic # 7 Polarization: -111.32 SS G_CDS: -4.91 Total: -116.23 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.00 kcal Atomic # 17 Polarization: -1.46 SS G_CDS: -0.08 Total: -1.53 kcal Total: -60.68 5.03 -55.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167135217.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.195 kcal (2) G-P(sol) polarization free energy of solvation -60.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds