Wall clock time and date at job start Tue Mar 31 2020 14:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 N 1.33036 * 120.17286 * 303.46493 * 3 2 1 5 5 C 1.31841 * 119.98766 * 180.02562 * 4 3 2 6 6 C 1.38644 * 120.35474 * 359.97438 * 5 4 3 7 7 N 1.32120 * 120.34974 * 359.72207 * 6 5 4 8 8 C 1.32729 * 120.00003 * 0.55678 * 7 6 5 9 9 N 1.38407 * 120.17357 * 179.71860 * 8 7 6 10 10 C 1.46901 * 110.99890 * 63.97872 * 9 8 7 11 11 C 1.50704 * 109.47257 * 72.05774 * 10 9 8 12 12 H 1.07997 * 120.00016 * 355.10220 * 11 10 9 13 13 C 1.37877 * 120.00018 * 174.83004 * 11 10 9 14 14 N 1.31510 * 120.00023 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00033 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47012 * 89.99799 * 15 13 11 17 17 H 1.48497 * 109.47262 * 209.99991 * 15 13 11 18 18 H 1.48499 * 109.47151 * 329.99814 * 15 13 11 19 19 C 1.46897 * 111.00078 * 300.02367 * 9 8 7 20 20 C 1.50699 * 109.47248 * 287.84207 * 19 9 8 21 21 C 1.38241 * 119.98668 * 275.26896 * 20 19 9 22 22 C 1.38208 * 120.01370 * 179.72569 * 21 20 19 23 23 C 1.38354 * 119.98725 * 0.54386 * 22 21 20 24 24 Cl 1.73595 * 120.01814 * 179.70295 * 23 22 21 25 25 C 1.38353 * 119.97127 * 359.72689 * 23 22 21 26 26 C 1.38215 * 119.98640 * 359.97438 * 25 23 22 27 27 H 1.08004 * 119.82214 * 179.97438 * 5 4 3 28 28 H 1.08001 * 119.82808 * 179.97438 * 6 5 4 29 29 H 1.09007 * 109.47307 * 312.06123 * 10 9 8 30 30 H 1.08999 * 109.47061 * 192.05856 * 10 9 8 31 31 H 0.97003 * 120.00346 * 179.97438 * 14 13 11 32 32 H 1.09004 * 109.47132 * 47.84154 * 19 9 8 33 33 H 1.09004 * 109.46875 * 167.84064 * 19 9 8 34 34 H 1.08005 * 119.99176 * 359.97438 * 21 20 19 35 35 H 1.07999 * 120.01023 * 180.26448 * 22 21 20 36 36 H 1.07999 * 120.01166 * 179.97438 * 25 23 22 37 37 H 1.07999 * 119.99224 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.2369 -0.6333 0.9595 5 6 4.5553 -0.6299 0.9562 6 6 5.2518 0.0314 -0.0438 7 7 4.6013 0.6603 -1.0065 8 6 3.2741 0.6705 -1.0138 9 7 2.5890 1.3332 -2.0175 10 6 2.8470 0.7174 -3.3260 11 6 2.1393 -0.6108 -3.4046 12 1 1.6220 -0.9990 -2.5397 13 6 2.1474 -1.3277 -4.5823 14 7 2.7732 -0.8527 -5.6369 15 14 1.2707 -2.9743 -4.6794 16 1 -0.1351 -2.7621 -5.1080 17 1 1.9619 -3.8459 -5.6632 18 1 1.2884 -3.6241 -3.3442 19 6 2.9288 2.7622 -2.0319 20 6 2.2993 3.4403 -0.8424 21 6 0.9908 3.8809 -0.9107 22 6 0.4111 4.4978 0.1818 23 6 1.1442 4.6844 1.3402 24 17 0.4193 5.4661 2.7102 25 6 2.4555 4.2482 1.4060 26 6 3.0322 3.6259 0.3149 27 1 5.0957 -1.1450 1.7366 28 1 6.3318 0.0290 -0.0379 29 1 3.9192 0.5657 -3.4512 30 1 2.4782 1.3728 -4.1150 31 1 2.7792 -1.3572 -6.4654 32 1 4.0116 2.8787 -1.9856 33 1 2.5535 3.2156 -2.9494 34 1 0.4201 3.7395 -1.8167 35 1 -0.6125 4.8382 0.1298 36 1 3.0285 4.3940 2.3098 37 1 4.0559 3.2858 0.3661 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167135660.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:22 Heat of formation + Delta-G solvation = 116.144057 kcal Electronic energy + Delta-G solvation = -24976.236174 eV Core-core repulsion = 21359.347992 eV Total energy + Delta-G solvation = -3616.888182 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.079 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.15544 -39.38535 -37.20059 -36.36747 -36.09412 -33.79476 -32.88733 -31.67803 -31.07290 -30.34072 -27.34813 -25.53390 -25.34590 -23.70862 -22.81063 -21.63825 -20.86620 -19.34739 -17.80558 -17.27357 -16.72982 -16.11657 -15.58971 -15.44266 -15.22525 -14.85964 -14.50212 -13.96117 -13.79250 -13.55961 -13.47334 -13.32052 -12.73914 -12.62627 -12.52700 -12.33956 -12.05427 -11.72956 -11.57886 -11.49062 -11.39540 -11.27394 -11.01392 -10.85557 -10.75600 -10.70713 -10.16634 -9.56473 -9.22059 -9.04735 -8.87766 -8.63541 -8.55071 -7.97330 -6.19321 -4.21992 0.59431 1.10240 1.20259 1.30940 2.08049 3.03879 3.22042 3.25038 3.31003 3.35294 3.53537 3.69917 4.12927 4.14358 4.34023 4.45223 4.70170 4.75589 4.84243 4.86850 5.10166 5.18444 5.23319 5.28216 5.35400 5.50266 5.63083 5.69612 5.94893 5.96015 6.12324 6.18962 6.24241 6.59624 6.78455 6.84155 7.03909 7.24937 7.44662 7.73246 7.82810 7.85990 7.92371 8.15796 8.82124 9.43164 10.90681 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.013990 B = 0.004167 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.881810 B = 6717.729135 C = 7215.012968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C 0.292 3.708 3 C 0.162 3.838 4 N -0.405 5.405 5 C 0.032 3.968 6 C 0.089 3.911 7 N -0.463 5.463 8 C 0.348 3.652 9 N -0.488 5.488 10 C 0.198 3.802 11 C -0.517 4.517 12 H 0.059 0.941 13 C 0.065 3.935 14 N -0.891 5.891 15 Si 0.894 3.106 16 H -0.277 1.277 17 H -0.284 1.284 18 H -0.273 1.273 19 C 0.091 3.909 20 C -0.070 4.070 21 C -0.080 4.080 22 C -0.110 4.110 23 C -0.037 4.037 24 Cl -0.081 7.081 25 C -0.112 4.112 26 C -0.103 4.103 27 H 0.176 0.824 28 H 0.172 0.828 29 H 0.015 0.985 30 H 0.048 0.952 31 H 0.264 0.736 32 H 0.061 0.939 33 H 0.096 0.904 34 H 0.136 0.864 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.031 9.513 13.007 16.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.068 5.068 2 C -0.026 4.026 3 C 0.019 3.981 4 N -0.121 5.121 5 C -0.131 4.131 6 C -0.075 4.075 7 N -0.181 5.181 8 C 0.115 3.885 9 N -0.213 5.213 10 C 0.076 3.924 11 C -0.556 4.556 12 H 0.077 0.923 13 C -0.137 4.137 14 N -0.530 5.530 15 Si 0.721 3.279 16 H -0.203 1.203 17 H -0.210 1.210 18 H -0.198 1.198 19 C -0.035 4.035 20 C -0.071 4.071 21 C -0.098 4.098 22 C -0.129 4.129 23 C -0.063 4.063 24 Cl -0.052 7.052 25 C -0.131 4.131 26 C -0.122 4.122 27 H 0.193 0.807 28 H 0.189 0.811 29 H 0.033 0.967 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.114 0.886 34 H 0.154 0.846 35 H 0.149 0.851 36 H 0.147 0.853 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.745 9.497 12.962 16.302 hybrid contribution 0.818 -0.964 -0.259 1.290 sum 3.563 8.533 12.703 15.713 Atomic orbital electron populations 1.81088 1.11337 1.06832 1.07496 1.24188 0.90995 0.94138 0.93298 1.17088 0.87663 0.99482 0.93857 1.68230 1.09532 1.12690 1.21644 1.23608 0.89707 0.99578 1.00213 1.23896 1.01961 0.92057 0.89599 1.68733 1.09033 1.17537 1.22788 1.20581 0.86924 0.90196 0.90760 1.60346 1.52726 1.00972 1.07210 1.20023 0.96749 0.94989 0.80653 1.21032 1.33742 1.03038 0.97744 0.92299 1.24870 0.95304 0.98192 0.95367 1.69924 1.42383 1.38688 1.01963 0.86550 0.79918 0.83393 0.78050 1.20271 1.20984 1.19832 1.21175 0.98893 0.87236 0.96186 1.20089 0.94432 0.97033 0.95560 1.21081 0.94331 0.95895 0.98540 1.21057 1.00118 0.99931 0.91776 1.20888 0.94321 1.01643 0.89480 1.98353 1.83455 1.79510 1.43864 1.20938 0.93411 0.99385 0.99362 1.21005 0.99986 0.98841 0.92390 0.80726 0.81116 0.96664 0.93421 0.92606 0.92040 0.88571 0.84576 0.85062 0.85295 0.85813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -8.27 18.54 41.84 0.78 -7.49 16 2 C 0.29 5.91 14.49 -22.47 -0.33 5.58 16 3 C 0.16 2.99 6.56 -84.55 -0.55 2.43 16 4 N -0.40 -6.46 10.42 -10.74 -0.11 -6.57 16 5 C 0.03 0.37 11.21 -17.40 -0.19 0.18 16 6 C 0.09 1.07 11.22 -17.28 -0.19 0.87 16 7 N -0.46 -7.55 9.33 -11.97 -0.11 -7.66 16 8 C 0.35 6.39 3.96 -154.78 -0.61 5.78 16 9 N -0.49 -9.52 3.78 -175.56 -0.66 -10.18 16 10 C 0.20 4.68 4.70 -4.97 -0.02 4.66 16 11 C -0.52 -13.84 8.87 -34.44 -0.31 -14.14 16 12 H 0.06 1.62 7.12 -52.49 -0.37 1.25 16 13 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 14 N -0.89 -25.10 13.29 55.43 0.74 -24.36 16 15 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 18 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 19 C 0.09 1.45 5.08 -4.98 -0.03 1.42 16 20 C -0.07 -1.01 5.03 -104.62 -0.53 -1.54 16 21 C -0.08 -1.11 9.72 -39.59 -0.38 -1.49 16 22 C -0.11 -1.43 9.83 -39.55 -0.39 -1.82 16 23 C -0.04 -0.47 6.32 -39.50 -0.25 -0.72 16 24 Cl -0.08 -0.94 28.96 -51.86 -1.50 -2.44 16 25 C -0.11 -1.38 9.83 -39.55 -0.39 -1.77 16 26 C -0.10 -1.35 9.31 -39.59 -0.37 -1.72 16 27 H 0.18 1.26 8.06 -52.48 -0.42 0.84 16 28 H 0.17 1.31 8.06 -52.49 -0.42 0.88 16 29 H 0.02 0.39 7.63 -51.92 -0.40 -0.01 16 30 H 0.05 1.18 7.72 -51.93 -0.40 0.78 16 31 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 32 H 0.06 0.94 7.43 -51.93 -0.39 0.55 16 33 H 0.10 1.46 7.70 -51.93 -0.40 1.06 16 34 H 0.14 1.83 8.06 -52.48 -0.42 1.40 16 35 H 0.13 1.49 8.06 -52.49 -0.42 1.06 16 36 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 37 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 351.01 15.07 5.29 5.29 Total: -1.00 -30.82 351.01 -8.88 -39.70 By element: Atomic # 1 Polarization: 1.42 SS G_CDS: -3.63 Total: -2.21 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: -4.64 Total: -0.57 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: 0.63 Total: -56.27 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -1.50 Total: -2.44 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.82 -8.88 -39.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167135660.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.844 kcal (2) G-P(sol) polarization free energy of solvation -30.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds