Wall clock time and date at job start Tue Mar 31 2020 14:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 N 1.33036 * 120.17286 * 303.46493 * 3 2 1 5 5 C 1.31841 * 119.98766 * 180.02562 * 4 3 2 6 6 C 1.38644 * 120.35474 * 359.97438 * 5 4 3 7 7 N 1.32120 * 120.34974 * 359.72207 * 6 5 4 8 8 C 1.32729 * 120.00003 * 0.55678 * 7 6 5 9 9 N 1.38407 * 120.17357 * 179.71860 * 8 7 6 10 10 C 1.46901 * 110.99890 * 63.97872 * 9 8 7 11 11 C 1.50704 * 109.47257 * 72.05774 * 10 9 8 12 12 H 1.07997 * 120.00016 * 355.10220 * 11 10 9 13 13 C 1.37877 * 120.00018 * 174.83004 * 11 10 9 14 14 N 1.31510 * 120.00023 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00033 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47012 * 89.99799 * 15 13 11 17 17 H 1.48497 * 109.47262 * 209.99991 * 15 13 11 18 18 H 1.48499 * 109.47151 * 329.99814 * 15 13 11 19 19 C 1.46897 * 111.00078 * 300.02367 * 9 8 7 20 20 C 1.50699 * 109.47248 * 287.84207 * 19 9 8 21 21 C 1.38241 * 119.98668 * 275.26896 * 20 19 9 22 22 C 1.38208 * 120.01370 * 179.72569 * 21 20 19 23 23 C 1.38354 * 119.98725 * 0.54386 * 22 21 20 24 24 Cl 1.73595 * 120.01814 * 179.70295 * 23 22 21 25 25 C 1.38353 * 119.97127 * 359.72689 * 23 22 21 26 26 C 1.38215 * 119.98640 * 359.97438 * 25 23 22 27 27 H 1.08004 * 119.82214 * 179.97438 * 5 4 3 28 28 H 1.08001 * 119.82808 * 179.97438 * 6 5 4 29 29 H 1.09007 * 109.47307 * 312.06123 * 10 9 8 30 30 H 1.08999 * 109.47061 * 192.05856 * 10 9 8 31 31 H 0.97003 * 120.00346 * 179.97438 * 14 13 11 32 32 H 1.09004 * 109.47132 * 47.84154 * 19 9 8 33 33 H 1.09004 * 109.46875 * 167.84064 * 19 9 8 34 34 H 1.08005 * 119.99176 * 359.97438 * 21 20 19 35 35 H 1.07999 * 120.01023 * 180.26448 * 22 21 20 36 36 H 1.07999 * 120.01166 * 179.97438 * 25 23 22 37 37 H 1.07999 * 119.99224 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.2369 -0.6333 0.9595 5 6 4.5553 -0.6299 0.9562 6 6 5.2518 0.0314 -0.0438 7 7 4.6013 0.6603 -1.0065 8 6 3.2741 0.6705 -1.0138 9 7 2.5890 1.3332 -2.0175 10 6 2.8470 0.7174 -3.3260 11 6 2.1393 -0.6108 -3.4046 12 1 1.6220 -0.9990 -2.5397 13 6 2.1474 -1.3277 -4.5823 14 7 2.7732 -0.8527 -5.6369 15 14 1.2707 -2.9743 -4.6794 16 1 -0.1351 -2.7621 -5.1080 17 1 1.9619 -3.8459 -5.6632 18 1 1.2884 -3.6241 -3.3442 19 6 2.9288 2.7622 -2.0319 20 6 2.2993 3.4403 -0.8424 21 6 0.9908 3.8809 -0.9107 22 6 0.4111 4.4978 0.1818 23 6 1.1442 4.6844 1.3402 24 17 0.4193 5.4661 2.7102 25 6 2.4555 4.2482 1.4060 26 6 3.0322 3.6259 0.3149 27 1 5.0957 -1.1450 1.7366 28 1 6.3318 0.0290 -0.0379 29 1 3.9192 0.5657 -3.4512 30 1 2.4782 1.3728 -4.1150 31 1 2.7792 -1.3572 -6.4654 32 1 4.0116 2.8787 -1.9856 33 1 2.5535 3.2156 -2.9494 34 1 0.4201 3.7395 -1.8167 35 1 -0.6125 4.8382 0.1298 36 1 3.0285 4.3940 2.3098 37 1 4.0559 3.2858 0.3661 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167135660.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:21 Heat of formation + Delta-G solvation = 98.177763 kcal Electronic energy + Delta-G solvation = -24977.015251 eV Core-core repulsion = 21359.347992 eV Total energy + Delta-G solvation = -3617.667259 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.079 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.36086 -40.44009 -38.49762 -37.60780 -37.39481 -35.12860 -34.75074 -32.84161 -32.09555 -31.67527 -29.08133 -26.75872 -26.56012 -25.31827 -23.83484 -23.09372 -22.05525 -20.62765 -19.11594 -18.60370 -18.06870 -17.68406 -17.06782 -16.56813 -16.31060 -16.21562 -15.90459 -15.31888 -15.02022 -14.77436 -14.51932 -14.42536 -14.29874 -14.15647 -13.99910 -13.84985 -13.54777 -13.30525 -13.02986 -12.78201 -12.68554 -12.51179 -12.42053 -12.32202 -12.17295 -12.00769 -11.80310 -11.47478 -10.71271 -10.39366 -10.11476 -10.01742 -9.69227 -9.42513 -8.27574 -6.35556 -0.61186 0.02397 0.09226 0.29112 1.09477 1.32201 1.34740 1.43491 1.56597 1.88453 2.27366 2.37706 2.52902 2.82288 2.90923 3.07636 3.33320 3.58534 3.71538 3.75332 3.89965 3.96493 4.16978 4.30604 4.31768 4.44378 4.53554 4.59880 4.73785 4.93743 5.01534 5.06796 5.17296 5.20386 5.29682 5.50513 5.55710 5.76543 5.88966 6.03370 6.21846 6.34029 6.44268 6.68365 6.76944 7.32683 8.82410 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.013990 B = 0.004167 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.881810 B = 6717.729135 C = 7215.012968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C 0.298 3.702 3 C 0.129 3.871 4 N -0.420 5.420 5 C 0.054 3.946 6 C 0.106 3.894 7 N -0.485 5.485 8 C 0.331 3.669 9 N -0.498 5.498 10 C 0.219 3.781 11 C -0.524 4.524 12 H 0.046 0.954 13 C 0.022 3.978 14 N -0.919 5.919 15 Si 0.945 3.055 16 H -0.276 1.276 17 H -0.273 1.273 18 H -0.276 1.276 19 C 0.096 3.904 20 C -0.080 4.080 21 C -0.093 4.093 22 C -0.115 4.115 23 C -0.042 4.042 24 Cl -0.069 7.069 25 C -0.110 4.110 26 C -0.101 4.101 27 H 0.231 0.769 28 H 0.225 0.775 29 H -0.004 1.004 30 H 0.026 0.974 31 H 0.267 0.733 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.131 0.869 35 H 0.144 0.856 36 H 0.153 0.847 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.050 9.084 15.194 19.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.106 5.106 2 C -0.019 4.019 3 C -0.011 4.011 4 N -0.137 5.137 5 C -0.110 4.110 6 C -0.059 4.059 7 N -0.203 5.203 8 C 0.100 3.900 9 N -0.222 5.222 10 C 0.095 3.905 11 C -0.563 4.563 12 H 0.064 0.936 13 C -0.178 4.178 14 N -0.558 5.558 15 Si 0.771 3.229 16 H -0.202 1.202 17 H -0.198 1.198 18 H -0.201 1.201 19 C -0.030 4.030 20 C -0.081 4.081 21 C -0.112 4.112 22 C -0.134 4.134 23 C -0.069 4.069 24 Cl -0.040 7.040 25 C -0.128 4.128 26 C -0.120 4.120 27 H 0.248 0.752 28 H 0.241 0.759 29 H 0.014 0.986 30 H 0.044 0.956 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.109 0.891 34 H 0.149 0.851 35 H 0.161 0.839 36 H 0.170 0.830 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.710 9.095 15.143 18.282 hybrid contribution 0.386 -0.822 -0.776 1.195 sum 5.095 8.272 14.367 17.344 Atomic orbital electron populations 1.81051 1.12352 1.08381 1.08847 1.24736 0.91790 0.93094 0.92266 1.17002 0.86788 1.01702 0.95596 1.68282 1.11520 1.12786 1.21082 1.24613 0.88298 0.97524 1.00579 1.24861 1.04214 0.89201 0.87607 1.68745 1.08035 1.18856 1.24639 1.20373 0.87827 0.91127 0.90653 1.60068 1.54081 1.02516 1.05555 1.19513 0.94731 0.93604 0.82652 1.21258 1.33441 1.04351 0.97232 0.93623 1.25540 0.96020 1.01027 0.95247 1.70004 1.43559 1.39892 1.02377 0.85747 0.79011 0.80222 0.77932 1.20162 1.19761 1.20116 1.21148 0.99318 0.85528 0.97013 1.19971 0.94759 0.97744 0.95620 1.21128 0.94479 0.96629 0.98948 1.21203 1.00793 0.99719 0.91654 1.21035 0.94669 1.01500 0.89708 1.98356 1.83331 1.79230 1.43102 1.21190 0.93325 0.98428 0.99860 1.21100 1.00371 0.98560 0.91946 0.75234 0.75902 0.98635 0.95573 0.92400 0.91502 0.89061 0.85119 0.83868 0.82975 0.84699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -18.76 18.54 19.00 0.35 -18.41 16 2 C 0.30 12.35 14.49 88.33 1.28 13.63 16 3 C 0.13 4.68 6.56 40.77 0.27 4.95 16 4 N -0.42 -12.43 10.42 -187.89 -1.96 -14.39 16 5 C 0.05 1.03 11.21 84.79 0.95 1.98 16 6 C 0.11 2.09 11.22 84.75 0.95 3.04 16 7 N -0.49 -14.89 9.33 -191.79 -1.79 -16.68 16 8 C 0.33 12.04 3.96 133.51 0.53 12.57 16 9 N -0.50 -20.00 3.78 -709.35 -2.68 -22.68 16 10 C 0.22 10.75 4.70 85.56 0.40 11.15 16 11 C -0.52 -28.81 8.87 25.60 0.23 -28.59 16 12 H 0.05 2.59 7.12 -2.91 -0.02 2.57 16 13 C 0.02 1.20 5.46 84.66 0.46 1.66 16 14 N -0.92 -52.64 13.29 21.45 0.28 -52.35 16 15 Si 0.95 44.52 29.54 68.60 2.03 46.55 16 16 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 17 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 18 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 19 C 0.10 3.12 5.08 85.56 0.43 3.56 16 20 C -0.08 -2.32 5.03 -19.86 -0.10 -2.42 16 21 C -0.09 -2.66 9.72 22.26 0.22 -2.44 16 22 C -0.12 -2.97 9.83 22.29 0.22 -2.75 16 23 C -0.04 -1.03 6.32 22.32 0.14 -0.89 16 24 Cl -0.07 -1.50 28.96 -2.72 -0.08 -1.58 16 25 C -0.11 -2.49 9.83 22.29 0.22 -2.27 16 26 C -0.10 -2.51 9.31 22.26 0.21 -2.30 16 27 H 0.23 1.72 8.06 -2.91 -0.02 1.70 16 28 H 0.22 1.95 8.06 -2.91 -0.02 1.93 16 29 H 0.00 -0.22 7.63 -2.38 -0.02 -0.24 16 30 H 0.03 1.37 7.72 -2.39 -0.02 1.36 16 31 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 32 H 0.07 2.06 7.43 -2.38 -0.02 2.04 16 33 H 0.09 2.96 7.70 -2.39 -0.02 2.94 16 34 H 0.13 3.75 8.06 -2.91 -0.02 3.73 16 35 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16 36 H 0.15 2.70 8.06 -2.91 -0.02 2.67 16 37 H 0.14 2.99 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -69.78 351.01 3.68 -66.10 By element: Atomic # 1 Polarization: 1.44 SS G_CDS: 1.12 Total: 2.55 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: 6.41 Total: 10.88 kcal Atomic # 7 Polarization: -118.72 SS G_CDS: -5.79 Total: -124.50 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Atomic # 17 Polarization: -1.50 SS G_CDS: -0.08 Total: -1.58 kcal Total: -69.78 3.68 -66.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167135660.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.279 kcal (2) G-P(sol) polarization free energy of solvation -69.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds