Wall clock time and date at job start Tue Mar 31 2020 14:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 C 1.39638 * 120.15094 * 103.53761 * 3 2 1 5 5 C 1.37942 * 119.84730 * 180.02562 * 4 3 2 6 6 C 1.38357 * 120.15346 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.84964 * 179.97438 * 6 5 4 8 8 C 1.53004 * 109.47208 * 90.00215 * 7 6 5 9 9 N 1.46499 * 109.47198 * 180.02562 * 8 7 6 10 10 C 1.38533 * 119.99843 * 180.27647 * 9 8 7 11 11 C 1.40044 * 120.45081 * 359.72628 * 10 9 8 12 12 C 1.38805 * 118.59315 * 180.02562 * 11 10 9 13 13 Cl 1.73597 * 120.33759 * 179.97438 * 12 11 10 14 14 N 1.32199 * 119.32505 * 359.97438 * 12 11 10 15 15 C 1.33424 * 120.86077 * 0.02562 * 14 12 11 16 16 C 1.41580 * 119.23331 * 179.97438 * 15 14 12 17 17 H 1.07998 * 119.99448 * 180.02562 * 16 15 14 18 18 C 1.40051 * 120.00068 * 359.97438 * 16 15 14 19 19 N 1.30689 * 120.00128 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99803 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47175 * 89.99903 * 20 18 16 22 22 H 1.48498 * 109.47168 * 210.00173 * 20 18 16 23 23 H 1.48507 * 109.47039 * 329.99896 * 20 18 16 24 24 N 1.32567 * 120.45239 * 179.44907 * 10 9 8 25 25 C 1.38370 * 120.30456 * 0.23648 * 6 5 4 26 26 C 1.37949 * 120.14891 * 359.48846 * 25 6 5 27 27 H 1.08006 * 120.07446 * 359.97438 * 4 3 2 28 28 H 1.08002 * 119.92164 * 180.02562 * 5 4 3 29 29 H 1.08995 * 109.47322 * 330.00632 * 7 6 5 30 30 H 1.09006 * 109.46960 * 210.00189 * 7 6 5 31 31 H 1.09009 * 109.46730 * 59.99906 * 8 7 6 32 32 H 1.08998 * 109.46846 * 300.00451 * 8 7 6 33 33 H 0.97001 * 119.99790 * 359.97438 * 9 8 7 34 34 H 1.08001 * 120.70171 * 359.97438 * 11 10 9 35 35 H 0.97008 * 119.99897 * 180.02562 * 19 18 16 36 36 H 1.07998 * 119.92143 * 179.72170 * 25 6 5 37 37 H 1.07997 * 120.07502 * 180.25786 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2692 0.2836 -1.1739 5 6 4.6486 0.2820 -1.1669 6 6 5.3374 0.0003 -0.0005 7 6 6.8444 -0.0001 -0.0008 8 6 7.3549 1.4020 0.3375 9 7 8.8199 1.4017 0.3366 10 6 9.5130 2.5664 0.6234 11 6 8.8227 3.7508 0.9099 12 6 9.5557 4.8954 1.1913 13 17 8.7464 6.3883 1.5519 14 7 10.8764 4.8371 1.1820 15 6 11.5091 3.6954 0.9058 16 6 12.9247 3.6722 0.9048 17 1 13.4495 2.7548 0.6825 18 6 13.6445 4.8390 1.1911 19 7 13.0094 5.9494 1.4587 20 14 15.5122 4.8084 1.1891 21 1 16.0112 5.1316 -0.1717 22 1 16.0248 5.8125 2.1557 23 1 15.9856 3.4567 1.5818 24 7 10.8386 2.5738 0.6358 25 6 4.6489 -0.2862 1.1650 26 6 3.2695 -0.2825 1.1736 27 1 2.7328 0.5024 -2.0854 28 1 5.1922 0.5011 -2.0741 29 1 7.2075 -0.2909 -0.9865 30 1 7.2077 -0.7085 0.7438 31 1 6.9918 1.6928 1.3233 32 1 6.9916 2.1103 -0.4070 33 1 9.3046 0.5849 0.1395 34 1 7.7429 3.7733 0.9109 35 1 13.5079 6.7577 1.6566 36 1 5.1928 -0.5096 2.0709 37 1 2.7333 -0.5023 2.0850 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167676717.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:07 Heat of formation + Delta-G solvation = 89.824295 kcal Electronic energy + Delta-G solvation = -22816.439191 eV Core-core repulsion = 19198.409698 eV Total energy + Delta-G solvation = -3618.029493 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.079 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.99935 -39.07312 -37.03432 -36.13405 -35.56585 -33.88549 -33.02147 -31.48403 -31.26100 -29.96363 -28.12333 -26.44051 -24.36747 -23.17335 -22.36341 -21.80202 -21.15146 -19.28890 -18.06039 -16.57866 -16.30515 -16.15322 -15.69760 -14.95969 -14.81014 -14.64790 -14.47199 -14.21917 -13.94009 -13.89625 -13.53267 -13.40605 -13.10929 -13.06598 -12.91806 -12.67451 -11.88792 -11.78116 -11.74557 -11.41839 -11.39743 -11.38132 -11.02451 -10.84641 -10.40675 -10.21962 -9.96914 -9.42164 -9.14688 -9.11605 -9.05529 -8.28840 -7.51732 -7.20980 -6.59336 -4.82735 0.37216 0.95334 2.32812 2.50151 2.57740 2.94420 2.95735 3.04261 3.07884 3.12070 3.46630 3.53202 3.74502 3.87620 4.40227 4.48522 4.58144 4.59454 4.88941 4.91357 4.98599 5.16213 5.28927 5.50121 5.56687 5.76044 5.82618 5.87910 5.89078 5.90081 6.06400 6.21667 6.32467 6.39315 6.42563 6.79399 6.89881 7.10100 7.13848 7.66884 8.08083 8.16035 8.49406 8.56634 9.02267 10.06278 10.21013 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.021753 B = 0.002244 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.872181 B =12472.244574 C =13446.396402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C 0.257 3.743 3 C -0.038 4.038 4 C -0.067 4.067 5 C -0.114 4.114 6 C -0.043 4.043 7 C -0.098 4.098 8 C 0.143 3.857 9 N -0.732 5.732 10 C 0.455 3.545 11 C -0.405 4.405 12 C 0.269 3.731 13 Cl -0.082 7.082 14 N -0.527 5.527 15 C 0.434 3.566 16 C -0.394 4.394 17 H 0.096 0.904 18 C 0.065 3.935 19 N -0.701 5.701 20 Si 0.919 3.081 21 H -0.267 1.267 22 H -0.275 1.275 23 H -0.259 1.259 24 N -0.641 5.641 25 C -0.114 4.114 26 C -0.067 4.067 27 H 0.133 0.867 28 H 0.136 0.864 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.398 0.602 34 H 0.111 0.889 35 H 0.277 0.723 36 H 0.136 0.864 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.661 -9.953 -2.455 15.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.098 5.098 2 C -0.058 4.058 3 C -0.042 4.042 4 C -0.088 4.088 5 C -0.132 4.132 6 C -0.044 4.044 7 C -0.136 4.136 8 C 0.018 3.982 9 N -0.369 5.369 10 C 0.208 3.792 11 C -0.438 4.438 12 C 0.088 3.912 13 Cl -0.054 7.054 14 N -0.249 5.249 15 C 0.198 3.802 16 C -0.429 4.429 17 H 0.114 0.886 18 C -0.163 4.163 19 N -0.322 5.322 20 Si 0.743 3.257 21 H -0.192 1.192 22 H -0.200 1.200 23 H -0.183 1.183 24 N -0.371 5.371 25 C -0.132 4.132 26 C -0.088 4.088 27 H 0.150 0.850 28 H 0.154 0.846 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.232 0.768 34 H 0.129 0.871 35 H 0.089 0.911 36 H 0.154 0.846 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -12.571 -9.506 -2.334 15.933 hybrid contribution 0.210 0.050 0.004 0.216 sum -12.361 -9.455 -2.330 15.736 Atomic orbital electron populations 1.81267 1.12142 1.08984 1.07411 1.25772 0.92724 0.93598 0.93740 1.16008 0.84197 1.08054 0.95912 1.21175 0.94286 0.96631 0.96668 1.21067 0.93442 1.00156 0.98581 1.20022 0.95612 0.95519 0.93286 1.20886 0.90548 0.98141 1.04021 1.21103 0.80564 0.95197 1.01377 1.44003 1.04089 1.09847 1.78965 1.18099 0.88840 0.84968 0.87284 1.20917 0.99258 0.93414 1.30229 1.21450 0.91674 0.85009 0.93088 1.98296 1.77620 1.36368 1.93157 1.68597 1.04988 1.28451 1.22814 1.19466 0.93801 0.80116 0.86808 1.19357 0.87867 0.96815 1.38842 0.88597 1.26133 1.01526 0.94914 0.93763 1.70147 1.37361 0.99832 1.24840 0.86129 0.81098 0.79468 0.79028 1.19219 1.19970 1.18291 1.68216 1.05209 1.31825 1.31880 1.21073 0.93444 1.00350 0.98382 1.21173 0.94284 0.96691 0.96609 0.84958 0.84625 0.89722 0.89727 0.92165 0.92159 0.76760 0.87119 0.91138 0.84627 0.84959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.00 18.54 41.84 0.78 -4.22 16 2 C 0.26 2.41 15.33 -22.47 -0.34 2.07 16 3 C -0.04 -0.29 5.73 -106.93 -0.61 -0.90 16 4 C -0.07 -0.44 9.76 -39.17 -0.38 -0.82 16 5 C -0.11 -0.75 9.68 -39.65 -0.38 -1.13 16 6 C -0.04 -0.30 5.14 -104.53 -0.54 -0.84 16 7 C -0.10 -0.75 5.45 -27.88 -0.15 -0.90 16 8 C 0.14 1.64 4.90 -4.04 -0.02 1.62 16 9 N -0.73 -11.48 5.71 -60.25 -0.34 -11.83 16 10 C 0.46 9.82 7.71 -154.99 -1.19 8.63 16 11 C -0.41 -8.83 9.23 -38.69 -0.36 -9.19 16 12 C 0.27 6.53 7.33 -17.18 -0.13 6.41 16 13 Cl -0.08 -1.72 29.15 -51.86 -1.51 -3.23 16 14 N -0.53 -14.42 7.86 -9.84 -0.08 -14.50 16 15 C 0.43 11.89 7.37 -158.35 -1.17 10.72 16 16 C -0.39 -10.38 9.37 -37.63 -0.35 -10.73 16 17 H 0.10 2.40 7.85 -52.49 -0.41 1.99 16 18 C 0.06 1.59 5.50 -17.36 -0.10 1.50 16 19 N -0.70 -18.12 11.42 55.55 0.63 -17.49 16 20 Si 0.92 17.93 29.56 -169.99 -5.02 12.91 16 21 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 22 H -0.27 -5.24 7.11 56.52 0.40 -4.83 16 23 H -0.26 -4.97 7.11 56.52 0.40 -4.56 16 24 N -0.64 -16.09 10.39 -11.89 -0.12 -16.22 16 25 C -0.11 -0.75 9.68 -39.64 -0.38 -1.13 16 26 C -0.07 -0.44 9.76 -39.17 -0.38 -0.82 16 27 H 0.13 0.66 8.06 -52.48 -0.42 0.24 16 28 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 29 H 0.08 0.58 8.08 -51.93 -0.42 0.16 16 30 H 0.08 0.59 8.08 -51.93 -0.42 0.17 16 31 H 0.06 0.72 7.97 -51.92 -0.41 0.31 16 32 H 0.06 0.72 7.97 -51.93 -0.41 0.31 16 33 H 0.40 5.69 8.60 -40.82 -0.35 5.33 16 34 H 0.11 2.11 6.85 -52.49 -0.36 1.75 16 35 H 0.28 6.47 8.29 -40.82 -0.34 6.13 16 36 H 0.14 0.72 8.06 -52.49 -0.42 0.29 16 37 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 LS Contribution 351.80 15.07 5.30 5.30 Total: -1.00 -31.24 351.80 -10.47 -41.71 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -3.61 Total: 3.08 kcal Atomic # 6 Polarization: 10.97 SS G_CDS: -6.49 Total: 4.48 kcal Atomic # 7 Polarization: -65.11 SS G_CDS: 0.87 Total: -64.25 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -5.02 Total: 12.91 kcal Atomic # 17 Polarization: -1.72 SS G_CDS: -1.51 Total: -3.23 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.24 -10.47 -41.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167676717.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.537 kcal (2) G-P(sol) polarization free energy of solvation -31.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds