Wall clock time and date at job start Tue Mar 31 2020 15:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30689 * 1 3 3 Si 1.86797 * 120.00346 * 2 1 4 4 H 1.48498 * 109.47189 * 240.00935 * 3 2 1 5 5 H 1.48501 * 109.46812 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47350 * 119.99991 * 3 2 1 7 7 C 1.40060 * 119.99862 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99955 * 179.97438 * 7 2 1 9 9 C 1.41568 * 120.00368 * 359.97438 * 7 2 1 10 10 N 1.33454 * 119.23399 * 0.02562 * 9 7 2 11 11 C 1.32176 * 120.85772 * 180.02562 * 10 9 7 12 12 Cl 1.73594 * 120.33960 * 180.02562 * 11 10 9 13 13 C 1.38844 * 119.32266 * 359.97438 * 11 10 9 14 14 C 1.40003 * 118.59354 * 0.02562 * 13 11 10 15 15 N 1.38546 * 120.44677 * 179.97438 * 14 13 11 16 16 C 1.46494 * 120.00061 * 359.97438 * 15 14 13 17 17 C 1.53004 * 109.46951 * 179.97438 * 16 15 14 18 18 N 1.46898 * 109.46975 * 180.02562 * 17 16 15 19 19 C 1.46456 * 110.94401 * 63.82121 * 18 17 16 20 20 C 1.53249 * 109.86972 * 197.56672 * 19 18 17 21 21 S 1.81897 * 108.66568 * 298.30348 * 20 19 18 22 22 C 1.81893 * 101.91717 * 51.20737 * 21 20 19 23 23 C 1.46469 * 110.99912 * 190.00298 * 18 17 16 24 24 N 1.32588 * 119.10514 * 0.25362 * 14 13 11 25 25 H 0.96998 * 120.00079 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.70058 * 180.02562 * 13 11 10 27 27 H 0.97003 * 119.99348 * 180.02562 * 15 14 13 28 28 H 1.09002 * 109.47124 * 60.00586 * 16 15 14 29 29 H 1.08999 * 109.47596 * 300.00072 * 16 15 14 30 30 H 1.09002 * 109.46958 * 60.00834 * 17 16 15 31 31 H 1.08999 * 109.47148 * 300.00492 * 17 16 15 32 32 H 1.08994 * 109.23356 * 77.54578 * 19 18 17 33 33 H 1.09006 * 109.57141 * 317.79147 * 19 18 17 34 34 H 1.09002 * 109.63269 * 178.49984 * 20 19 18 35 35 H 1.08995 * 109.63165 * 58.10725 * 20 19 18 36 36 H 1.09003 * 109.63396 * 68.39688 * 22 21 20 37 37 H 1.09000 * 109.63862 * 188.78843 * 22 21 20 38 38 H 1.08999 * 109.40490 * 42.11718 * 23 18 17 39 39 H 1.08999 * 109.40390 * 282.35047 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 3.0945 1.6964 -1.2126 5 1 1.2760 2.7464 0.0006 6 1 3.0947 1.6963 1.2125 7 6 2.0072 -1.2130 -0.0005 8 1 3.0872 -1.2130 -0.0010 9 6 1.2994 -2.4390 -0.0005 10 7 -0.0351 -2.4212 -0.0005 11 6 -0.7281 -3.5467 0.0000 12 17 -2.4636 -3.5079 -0.0007 13 6 -0.0538 -4.7605 0.0000 14 6 1.3462 -4.7492 0.0000 15 7 2.0579 -5.9379 0.0005 16 6 1.3457 -7.2180 0.0016 17 6 2.3583 -8.3650 0.0014 18 7 1.6441 -9.6487 0.0019 19 6 0.8618 -9.8130 -1.2252 20 6 -0.1919 -10.9082 -1.0285 21 16 0.6583 -12.4779 -0.6794 22 6 1.7805 -12.0049 0.6717 23 6 2.5658 -10.7620 0.2392 24 7 1.9818 -3.5855 0.0051 25 1 -0.4850 0.8400 0.0004 26 1 -0.5977 -5.6934 0.0000 27 1 3.0278 -5.9224 0.0009 28 1 0.7198 -7.2863 -0.8881 29 1 0.7203 -7.2852 0.8919 30 1 2.9846 -8.2969 0.8909 31 1 2.9834 -8.2977 -0.8891 32 1 1.5280 -10.0936 -2.0409 33 1 0.3662 -8.8736 -1.4708 34 1 -0.7892 -11.0089 -1.9347 35 1 -0.8387 -10.6479 -0.1907 36 1 1.2011 -11.7787 1.5669 37 1 2.4698 -12.8235 0.8789 38 1 3.2707 -10.4876 1.0240 39 1 3.1133 -10.9806 -0.6776 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167833035.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:27 Heat of formation + Delta-G solvation = 33.036914 kcal Electronic energy + Delta-G solvation = -22604.997857 eV Core-core repulsion = 19119.949830 eV Total energy + Delta-G solvation = -3485.048027 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.082 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.93327 -39.57930 -37.47564 -37.11387 -35.35752 -33.45801 -32.60524 -32.37813 -30.89655 -28.34217 -27.95762 -24.81433 -24.15415 -23.78820 -22.74828 -21.77412 -19.83381 -18.34279 -18.07384 -17.75558 -16.84998 -16.56996 -16.21951 -16.07458 -15.79127 -15.56608 -15.19072 -15.10755 -14.99535 -14.73260 -14.50138 -14.26571 -13.62202 -13.25623 -13.16945 -13.08281 -12.96189 -12.75946 -12.74614 -12.57597 -12.38550 -12.02875 -11.95829 -11.75417 -11.47501 -10.92421 -10.90695 -10.67653 -10.11665 -9.50561 -9.42575 -8.83012 -8.71533 -8.43149 -6.79231 0.64268 0.82528 1.13676 1.13952 1.43057 1.56120 1.56454 1.57233 2.12563 2.23936 2.75597 2.92731 3.71841 3.81598 3.86380 3.93660 4.03056 4.19623 4.24167 4.26151 4.34721 4.37255 4.47061 4.53236 4.63589 4.68457 4.75527 4.83816 4.87016 4.91057 4.97675 5.00529 5.12517 5.32576 5.83329 5.95524 6.01891 6.16947 6.49685 6.67070 6.75032 7.22753 8.19774 8.37037 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.021882 B = 0.002468 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.257498 B =11340.623461 C =12427.401488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.739 5.739 2 C 0.024 3.976 3 Si 1.000 3.000 4 H -0.257 1.257 5 H -0.265 1.265 6 H -0.257 1.257 7 C -0.427 4.427 8 H 0.096 0.904 9 C 0.408 3.592 10 N -0.563 5.563 11 C 0.246 3.754 12 Cl -0.058 7.058 13 C -0.399 4.399 14 C 0.450 3.550 15 N -0.714 5.714 16 C 0.140 3.860 17 C 0.064 3.936 18 N -0.554 5.554 19 C 0.050 3.950 20 C -0.065 4.065 21 S -0.315 6.315 22 C -0.064 4.064 23 C 0.059 3.941 24 N -0.664 5.664 25 H 0.285 0.715 26 H 0.137 0.863 27 H 0.404 0.596 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.094 0.906 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.093 0.907 34 H 0.117 0.883 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.124 0.876 38 H 0.103 0.897 39 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.116 -18.090 -0.241 18.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.361 5.361 2 C -0.200 4.200 3 Si 0.819 3.181 4 H -0.181 1.181 5 H -0.189 1.189 6 H -0.181 1.181 7 C -0.462 4.462 8 H 0.114 0.886 9 C 0.171 3.829 10 N -0.286 5.286 11 C 0.067 3.933 12 Cl -0.030 7.030 13 C -0.431 4.431 14 C 0.202 3.798 15 N -0.351 5.351 16 C 0.015 3.985 17 C -0.064 4.064 18 N -0.280 5.280 19 C -0.079 4.079 20 C -0.213 4.213 21 S -0.090 6.090 22 C -0.213 4.213 23 C -0.070 4.070 24 N -0.396 5.396 25 H 0.096 0.904 26 H 0.155 0.845 27 H 0.240 0.760 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.113 0.887 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.111 0.889 34 H 0.135 0.865 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.142 0.858 38 H 0.121 0.879 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.650 -18.229 -0.347 18.424 hybrid contribution 0.271 0.950 -0.101 0.993 sum 2.921 -17.279 -0.448 17.530 Atomic orbital electron populations 1.70220 1.08958 1.29911 1.26966 1.27089 0.95849 1.04693 0.92414 0.84995 0.78438 0.74391 0.80273 1.18088 1.18927 1.18099 1.19675 0.95022 0.88335 1.43192 0.88594 1.19870 0.84239 0.91020 0.87789 1.68588 1.08448 1.27094 1.24462 1.21907 0.86693 0.91118 0.93547 1.98285 1.09386 1.98797 1.96548 1.21168 0.93401 0.97466 1.31107 1.18419 0.87955 0.86949 0.86469 1.44004 1.08342 1.01244 1.81487 1.21280 0.94954 0.80631 1.01616 1.22007 0.94719 0.86973 1.02674 1.60922 1.27586 1.02148 1.37348 1.22341 0.95586 0.99490 0.90530 1.23489 0.99341 0.92317 1.06197 1.87076 1.51859 1.20904 1.49160 1.23535 0.99455 1.00644 0.97620 1.22245 0.93606 0.89331 1.01856 1.68253 1.40465 0.97605 1.33274 0.90423 0.84526 0.75992 0.92233 0.92007 0.88739 0.93286 0.93322 0.88922 0.86466 0.89115 0.89056 0.85808 0.87888 0.93250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -39.32 11.42 21.84 0.25 -39.07 16 2 C 0.02 1.21 5.50 85.30 0.47 1.68 16 3 Si 1.00 37.19 29.56 68.60 2.03 39.22 16 4 H -0.26 -9.21 7.11 99.48 0.71 -8.51 16 5 H -0.27 -9.28 7.11 99.48 0.71 -8.57 16 6 H -0.26 -9.22 7.11 99.48 0.71 -8.52 16 7 C -0.43 -23.39 9.37 23.53 0.22 -23.17 16 8 H 0.10 5.00 7.85 -2.91 -0.02 4.98 16 9 C 0.41 23.27 7.37 135.16 1.00 24.27 16 10 N -0.56 -31.94 7.86 -185.02 -1.45 -33.39 16 11 C 0.25 12.24 7.33 84.79 0.62 12.86 16 12 Cl -0.06 -2.44 29.15 -2.72 -0.08 -2.52 16 13 C -0.40 -17.60 9.23 22.84 0.21 -17.39 16 14 C 0.45 19.91 7.71 133.37 1.03 20.94 16 15 N -0.71 -22.91 5.71 -344.57 -1.97 -24.88 16 16 C 0.14 3.34 4.84 86.38 0.42 3.75 16 17 C 0.06 1.10 5.08 86.31 0.44 1.53 16 18 N -0.55 -8.86 4.41 -897.54 -3.95 -12.82 16 19 C 0.05 0.80 5.30 86.47 0.46 1.25 16 20 C -0.06 -1.01 6.68 72.07 0.48 -0.53 16 21 S -0.32 -5.51 22.40 -56.49 -1.27 -6.78 16 22 C -0.06 -0.83 6.69 72.07 0.48 -0.35 16 23 C 0.06 0.75 5.43 86.47 0.47 1.22 16 24 N -0.66 -34.59 10.39 -191.55 -1.99 -36.58 16 25 H 0.28 13.62 8.29 -92.71 -0.77 12.85 16 26 H 0.14 5.16 6.85 -2.91 -0.02 5.14 16 27 H 0.40 11.85 8.60 -92.71 -0.80 11.06 16 28 H 0.06 1.44 6.00 -2.39 -0.01 1.43 16 29 H 0.06 1.59 7.97 -2.39 -0.02 1.58 16 30 H 0.09 1.46 7.84 -2.39 -0.02 1.44 16 31 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.05 0.80 7.92 -2.39 -0.02 0.78 16 33 H 0.09 1.54 5.77 -2.38 -0.01 1.53 16 34 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.12 1.18 8.14 -2.39 -0.02 1.17 16 38 H 0.10 1.03 7.76 -2.39 -0.02 1.02 16 39 H 0.05 0.66 7.92 -2.39 -0.02 0.64 16 Total: -1.00 -65.86 346.20 -1.85 -67.71 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: 0.29 Total: 23.04 kcal Atomic # 6 Polarization: 19.77 SS G_CDS: 6.29 Total: 26.07 kcal Atomic # 7 Polarization: -137.63 SS G_CDS: -9.12 Total: -146.74 kcal Atomic # 14 Polarization: 37.19 SS G_CDS: 2.03 Total: 39.22 kcal Atomic # 16 Polarization: -5.51 SS G_CDS: -1.27 Total: -6.78 kcal Atomic # 17 Polarization: -2.44 SS G_CDS: -0.08 Total: -2.52 kcal Total: -65.86 -1.85 -67.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167833035.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.748 kcal (2) G-P(sol) polarization free energy of solvation -65.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds