Wall clock time and date at job start Tue Mar 31 2020 16:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.47210 * 109.47053 * 2 1 4 4 N 2.60800 * 109.47020 * 359.97438 * 2 1 3 5 5 N 1.46503 * 109.47366 * 119.99925 * 2 1 3 6 6 C 1.37940 * 119.99806 * 294.94237 * 5 2 1 7 7 N 1.32619 * 120.23610 * 359.72192 * 6 5 2 8 8 C 1.32247 * 120.08548 * 179.76552 * 7 6 5 9 9 C 1.38976 * 120.56582 * 0.51633 * 8 7 6 10 10 N 1.31717 * 120.47632 * 359.74242 * 9 8 7 11 11 C 1.33916 * 119.89217 * 359.97438 * 10 9 8 12 12 C 1.40818 * 120.27093 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99921 * 179.97438 * 12 11 10 14 14 C 1.40122 * 120.00689 * 359.97438 * 12 11 10 15 15 N 1.30739 * 119.99238 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00549 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47010 * 359.97438 * 16 14 12 18 18 H 1.48490 * 109.47437 * 120.00086 * 16 14 12 19 19 H 1.48497 * 109.47098 * 240.00537 * 16 14 12 20 20 C 1.50698 * 109.47533 * 240.00016 * 2 1 3 21 21 C 1.38244 * 120.00299 * 358.14883 * 20 2 1 22 22 C 1.38218 * 120.01246 * 180.02562 * 21 20 2 23 23 C 1.38264 * 120.02860 * 359.97438 * 22 21 20 24 24 C 1.38195 * 120.00853 * 359.97438 * 23 22 21 25 25 C 1.38324 * 120.01207 * 178.14846 * 20 2 1 26 26 Cl 1.73605 * 120.01237 * 0.25769 * 25 20 2 27 27 H 1.09001 * 109.46615 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46983 * 299.99604 * 1 2 3 29 29 H 1.08996 * 109.47354 * 60.00313 * 1 2 3 30 30 H 0.96997 * 119.99734 * 114.94405 * 5 2 1 31 31 H 1.07996 * 119.71639 * 180.23273 * 8 7 6 32 32 H 1.07994 * 119.76042 * 179.76567 * 9 8 7 33 33 H 0.97000 * 119.99810 * 180.02562 * 15 14 12 34 34 H 1.08001 * 119.99228 * 0.02562 * 21 20 2 35 35 H 1.08001 * 119.98387 * 180.02562 * 22 21 20 36 36 H 1.07995 * 119.99580 * 180.02562 * 23 22 21 37 37 H 1.07997 * 120.00245 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0207 1.3879 0.0000 4 7 2.3993 2.4589 -0.0011 5 7 2.0184 -0.6906 1.1962 6 6 1.7733 -0.1616 2.4463 7 7 1.1009 0.9747 2.5705 8 6 0.8636 1.4768 3.7707 9 6 1.3229 0.8290 4.9113 10 7 1.9974 -0.2981 4.8135 11 6 2.2434 -0.8262 3.6077 12 6 2.9633 -2.0311 3.4939 13 1 3.1588 -2.4533 2.5192 14 6 3.4259 -2.6824 4.6450 15 7 3.1887 -2.1716 5.8249 16 14 4.3814 -4.2804 4.4940 17 1 4.5138 -4.6443 3.0603 18 1 5.7313 -4.1081 5.0882 19 1 3.6580 -5.3595 5.2132 20 6 2.0324 -0.7104 -1.2304 21 6 1.1348 -1.2692 -2.1210 22 6 1.5954 -1.9213 -3.2493 23 6 2.9540 -2.0146 -3.4883 24 6 3.8522 -1.4554 -2.5993 25 6 3.3917 -0.8034 -1.4690 26 17 4.5198 -0.1077 -0.3477 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8900 30 1 2.5141 -1.5198 1.1090 31 1 0.3122 2.4006 3.8652 32 1 1.1250 1.2526 5.8848 33 1 3.5092 -2.6222 6.6218 34 1 0.0734 -1.1962 -1.9350 35 1 0.8937 -2.3573 -3.9449 36 1 3.3133 -2.5238 -4.3703 37 1 4.9134 -1.5288 -2.7859 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169377580.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:14 Heat of formation + Delta-G solvation = 110.934089 kcal Electronic energy + Delta-G solvation = -25229.642982 eV Core-core repulsion = 21612.528879 eV Total energy + Delta-G solvation = -3617.114103 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.079 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.17154 -38.94992 -36.92085 -36.33061 -34.78824 -34.00809 -32.49825 -31.44914 -30.86404 -29.41852 -28.19393 -25.99927 -24.80258 -22.57688 -22.23416 -21.55325 -21.45901 -18.07220 -17.64540 -17.24013 -16.60746 -15.92788 -15.37828 -15.17324 -14.65228 -14.16934 -14.13825 -14.02632 -13.70847 -13.52938 -13.27757 -12.91061 -12.63156 -12.22648 -12.12930 -11.84418 -11.76756 -11.64913 -11.44116 -11.42234 -11.38132 -11.29414 -11.14622 -10.68024 -10.53866 -10.20881 -9.94360 -9.56891 -9.38671 -9.15964 -8.79797 -8.65775 -7.38845 -6.95663 -6.45405 -4.47888 0.94474 1.08192 2.20901 2.61379 3.01293 3.04042 3.07043 3.14314 3.23938 3.36884 3.49314 3.86540 4.17612 4.47987 4.57188 4.68227 4.71025 4.85867 5.06590 5.21010 5.38041 5.46177 5.67051 5.74202 5.83847 5.94507 5.96689 6.05389 6.12005 6.17267 6.24875 6.38410 6.57934 6.60860 6.73492 6.94995 7.03741 7.60160 7.87465 7.99405 8.16254 8.27335 8.56783 8.79047 9.36727 9.94898 10.20250 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.011675 B = 0.005557 C = 0.004410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.658987 B = 5037.557193 C = 6347.755310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.339 3.661 3 C 0.228 3.772 4 N -0.432 5.432 5 N -0.702 5.702 6 C 0.254 3.746 7 N -0.489 5.489 8 C -0.085 4.085 9 C 0.038 3.962 10 N -0.447 5.447 11 C 0.202 3.798 12 C -0.418 4.418 13 H 0.083 0.917 14 C 0.069 3.931 15 N -0.711 5.711 16 Si 0.904 3.096 17 H -0.258 1.258 18 H -0.273 1.273 19 H -0.272 1.272 20 C -0.087 4.087 21 C -0.085 4.085 22 C -0.120 4.120 23 C -0.101 4.101 24 C -0.114 4.114 25 C -0.021 4.021 26 Cl -0.043 7.043 27 H 0.074 0.926 28 H 0.093 0.907 29 H 0.062 0.938 30 H 0.412 0.588 31 H 0.122 0.878 32 H 0.124 0.876 33 H 0.274 0.726 34 H 0.144 0.856 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.932 -4.437 -15.199 15.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.246 3.754 3 C -0.092 4.092 4 N -0.108 5.108 5 N -0.346 5.346 6 C 0.008 3.992 7 N -0.209 5.209 8 C -0.240 4.240 9 C -0.125 4.125 10 N -0.165 5.165 11 C 0.068 3.932 12 C -0.452 4.452 13 H 0.101 0.899 14 C -0.157 4.157 15 N -0.333 5.333 16 Si 0.728 3.272 17 H -0.182 1.182 18 H -0.198 1.198 19 H -0.197 1.197 20 C -0.089 4.089 21 C -0.104 4.104 22 C -0.138 4.138 23 C -0.120 4.120 24 C -0.133 4.133 25 C -0.048 4.048 26 Cl -0.014 7.014 27 H 0.093 0.907 28 H 0.111 0.889 29 H 0.081 0.919 30 H 0.251 0.749 31 H 0.140 0.860 32 H 0.142 0.858 33 H 0.085 0.915 34 H 0.161 0.839 35 H 0.149 0.851 36 H 0.149 0.851 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.338 -2.564 -14.786 15.066 hybrid contribution 0.648 -1.209 0.241 1.392 sum -0.691 -3.773 -14.546 15.043 Atomic orbital electron populations 1.22307 0.92084 1.03356 1.04093 1.15819 0.94308 0.80879 0.84357 1.28984 0.92913 0.94577 0.92724 1.80961 1.08945 1.12673 1.08220 1.43751 1.63925 1.27336 0.99567 1.19170 1.00749 0.93499 0.85737 1.67215 1.15926 1.10657 1.27090 1.22237 1.10451 1.02833 0.88444 1.23174 0.97317 0.94359 0.97691 1.69526 1.14781 1.09322 1.22844 1.18981 0.93926 0.94246 0.86017 1.19276 1.28389 1.03734 0.93845 0.89873 1.26009 0.95773 0.98954 0.94952 1.70104 1.30265 1.34524 0.98384 0.86305 0.79626 0.81305 0.79923 1.18189 1.19801 1.19734 1.19626 0.91755 1.00775 0.96770 1.21219 1.00258 0.95874 0.93042 1.21240 0.95766 0.99306 0.97494 1.21174 0.93165 0.98678 0.98946 1.21076 1.00839 0.98223 0.93142 1.21030 0.90671 0.99624 0.93502 1.98452 1.60272 1.82475 1.60209 0.90708 0.88857 0.91907 0.74881 0.86033 0.85810 0.91451 0.83872 0.85081 0.85080 0.84780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 7.10 37.16 0.26 -2.03 16 2 C 0.34 5.61 0.61 -135.75 -0.08 5.53 16 3 C 0.23 4.44 10.15 -20.76 -0.21 4.23 16 4 N -0.43 -9.25 18.54 42.15 0.78 -8.47 16 5 N -0.70 -13.55 4.08 -50.93 -0.21 -13.76 16 6 C 0.25 5.91 6.92 -154.82 -1.07 4.84 16 7 N -0.49 -11.41 6.84 -11.67 -0.08 -11.48 16 8 C -0.09 -1.97 11.22 -17.10 -0.19 -2.16 16 9 C 0.04 0.92 11.21 -17.33 -0.19 0.73 16 10 N -0.45 -12.07 8.03 -10.79 -0.09 -12.16 16 11 C 0.20 5.22 6.56 -84.61 -0.56 4.67 16 12 C -0.42 -10.34 8.89 -37.90 -0.34 -10.67 16 13 H 0.08 1.86 6.12 -52.49 -0.32 1.54 16 14 C 0.07 1.67 5.50 -17.31 -0.10 1.57 16 15 N -0.71 -18.27 11.48 55.56 0.64 -17.63 16 16 Si 0.90 17.67 29.56 -169.99 -5.03 12.65 16 17 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 18 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 19 H -0.27 -5.26 7.11 56.52 0.40 -4.85 16 20 C -0.09 -1.19 4.76 -104.59 -0.50 -1.69 16 21 C -0.09 -0.89 8.98 -39.59 -0.36 -1.24 16 22 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 23 C -0.10 -0.88 10.05 -39.59 -0.40 -1.28 16 24 C -0.11 -1.24 9.83 -39.55 -0.39 -1.63 16 25 C -0.02 -0.29 6.01 -39.50 -0.24 -0.53 16 26 Cl -0.04 -0.72 25.44 -51.86 -1.32 -2.04 16 27 H 0.07 0.93 7.43 -51.93 -0.39 0.54 16 28 H 0.09 1.62 6.40 -51.93 -0.33 1.29 16 29 H 0.06 0.74 7.60 -51.93 -0.39 0.34 16 30 H 0.41 7.70 6.16 -40.82 -0.25 7.45 16 31 H 0.12 2.51 8.06 -52.49 -0.42 2.09 16 32 H 0.12 2.66 8.06 -52.49 -0.42 2.24 16 33 H 0.27 6.39 8.29 -40.82 -0.34 6.05 16 34 H 0.14 1.21 5.90 -52.49 -0.31 0.90 16 35 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 36 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 37 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 331.32 15.07 4.99 4.99 Total: -1.00 -31.02 331.32 -8.30 -39.32 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -3.24 Total: 9.66 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: -4.75 Total: -1.09 kcal Atomic # 7 Polarization: -64.54 SS G_CDS: 1.04 Total: -63.50 kcal Atomic # 14 Polarization: 17.67 SS G_CDS: -5.03 Total: 12.65 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.32 Total: -2.04 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.02 -8.30 -39.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169377580.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.252 kcal (2) G-P(sol) polarization free energy of solvation -31.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds