Wall clock time and date at job start Tue Mar 31 2020 16:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.47210 * 109.47053 * 2 1 4 4 N 2.60800 * 109.47020 * 359.97438 * 2 1 3 5 5 N 1.46503 * 109.47366 * 119.99925 * 2 1 3 6 6 C 1.37940 * 119.99806 * 294.94237 * 5 2 1 7 7 N 1.32619 * 120.23610 * 359.72192 * 6 5 2 8 8 C 1.32247 * 120.08548 * 179.76552 * 7 6 5 9 9 C 1.38976 * 120.56582 * 0.51633 * 8 7 6 10 10 N 1.31717 * 120.47632 * 359.74242 * 9 8 7 11 11 C 1.33916 * 119.89217 * 359.97438 * 10 9 8 12 12 C 1.40818 * 120.27093 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99921 * 179.97438 * 12 11 10 14 14 C 1.40122 * 120.00689 * 359.97438 * 12 11 10 15 15 N 1.30739 * 119.99238 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00549 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47010 * 359.97438 * 16 14 12 18 18 H 1.48490 * 109.47437 * 120.00086 * 16 14 12 19 19 H 1.48497 * 109.47098 * 240.00537 * 16 14 12 20 20 C 1.50698 * 109.47533 * 240.00016 * 2 1 3 21 21 C 1.38244 * 120.00299 * 358.14883 * 20 2 1 22 22 C 1.38218 * 120.01246 * 180.02562 * 21 20 2 23 23 C 1.38264 * 120.02860 * 359.97438 * 22 21 20 24 24 C 1.38195 * 120.00853 * 359.97438 * 23 22 21 25 25 C 1.38324 * 120.01207 * 178.14846 * 20 2 1 26 26 Cl 1.73605 * 120.01237 * 0.25769 * 25 20 2 27 27 H 1.09001 * 109.46615 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46983 * 299.99604 * 1 2 3 29 29 H 1.08996 * 109.47354 * 60.00313 * 1 2 3 30 30 H 0.96997 * 119.99734 * 114.94405 * 5 2 1 31 31 H 1.07996 * 119.71639 * 180.23273 * 8 7 6 32 32 H 1.07994 * 119.76042 * 179.76567 * 9 8 7 33 33 H 0.97000 * 119.99810 * 180.02562 * 15 14 12 34 34 H 1.08001 * 119.99228 * 0.02562 * 21 20 2 35 35 H 1.08001 * 119.98387 * 180.02562 * 22 21 20 36 36 H 1.07995 * 119.99580 * 180.02562 * 23 22 21 37 37 H 1.07997 * 120.00245 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0207 1.3879 0.0000 4 7 2.3993 2.4589 -0.0011 5 7 2.0184 -0.6906 1.1962 6 6 1.7733 -0.1616 2.4463 7 7 1.1009 0.9747 2.5705 8 6 0.8636 1.4768 3.7707 9 6 1.3229 0.8290 4.9113 10 7 1.9974 -0.2981 4.8135 11 6 2.2434 -0.8262 3.6077 12 6 2.9633 -2.0311 3.4939 13 1 3.1588 -2.4533 2.5192 14 6 3.4259 -2.6824 4.6450 15 7 3.1887 -2.1716 5.8249 16 14 4.3814 -4.2804 4.4940 17 1 4.5138 -4.6443 3.0603 18 1 5.7313 -4.1081 5.0882 19 1 3.6580 -5.3595 5.2132 20 6 2.0324 -0.7104 -1.2304 21 6 1.1348 -1.2692 -2.1210 22 6 1.5954 -1.9213 -3.2493 23 6 2.9540 -2.0146 -3.4883 24 6 3.8522 -1.4554 -2.5993 25 6 3.3917 -0.8034 -1.4690 26 17 4.5198 -0.1077 -0.3477 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8900 30 1 2.5141 -1.5198 1.1090 31 1 0.3122 2.4006 3.8652 32 1 1.1250 1.2526 5.8848 33 1 3.5092 -2.6222 6.6218 34 1 0.0734 -1.1962 -1.9350 35 1 0.8937 -2.3573 -3.9449 36 1 3.3133 -2.5238 -4.3703 37 1 4.9134 -1.5288 -2.7859 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169377580.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:13 Heat of formation + Delta-G solvation = 93.326817 kcal Electronic energy + Delta-G solvation = -25230.406490 eV Core-core repulsion = 21612.528879 eV Total energy + Delta-G solvation = -3617.877612 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.079 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.39121 -40.48197 -38.25308 -37.42250 -36.35535 -35.83234 -33.95434 -33.19542 -31.72836 -30.64033 -29.65045 -27.83400 -26.01667 -24.00612 -23.39741 -23.26493 -22.58322 -19.52155 -19.27280 -18.77297 -17.80422 -17.19330 -16.90144 -16.27807 -16.19290 -15.82624 -15.30731 -15.21909 -14.88339 -14.78596 -14.72544 -14.38124 -14.05229 -13.87696 -13.58488 -13.22021 -13.16546 -12.98013 -12.85072 -12.74903 -12.45965 -12.43117 -12.34504 -12.19433 -11.88382 -11.78334 -11.59374 -11.27426 -11.24121 -10.47034 -9.98989 -9.68811 -9.23022 -8.71927 -8.26671 -6.34623 0.07608 0.29343 0.79538 1.18710 1.23382 1.43546 1.54464 1.58272 1.72045 1.91806 2.22789 2.56722 2.81854 2.88816 3.12969 3.46330 3.77283 3.93538 4.10678 4.11717 4.26764 4.30813 4.42293 4.48470 4.54300 4.62883 4.75812 4.83543 4.93953 4.98961 5.11640 5.21234 5.24927 5.39160 5.42050 5.51353 5.79532 5.88948 6.10507 6.23020 6.55841 6.69543 6.76429 6.96580 7.56275 8.08976 8.43132 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.011675 B = 0.005557 C = 0.004410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.658987 B = 5037.557193 C = 6347.755310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.334 3.666 3 C 0.241 3.759 4 N -0.477 5.477 5 N -0.693 5.693 6 C 0.261 3.739 7 N -0.496 5.496 8 C -0.088 4.088 9 C 0.016 3.984 10 N -0.485 5.485 11 C 0.168 3.832 12 C -0.437 4.437 13 H 0.099 0.901 14 C 0.024 3.976 15 N -0.753 5.753 16 Si 0.980 3.020 17 H -0.243 1.243 18 H -0.274 1.274 19 H -0.266 1.266 20 C -0.108 4.108 21 C -0.082 4.082 22 C -0.107 4.107 23 C -0.089 4.089 24 C -0.120 4.120 25 C -0.043 4.043 26 Cl -0.085 7.085 27 H 0.098 0.902 28 H 0.061 0.939 29 H 0.093 0.907 30 H 0.413 0.587 31 H 0.145 0.855 32 H 0.141 0.859 33 H 0.279 0.721 34 H 0.166 0.834 35 H 0.171 0.829 36 H 0.168 0.832 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.655 -6.851 -18.592 19.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.243 3.757 3 C -0.079 4.079 4 N -0.154 5.154 5 N -0.335 5.335 6 C 0.014 3.986 7 N -0.217 5.217 8 C -0.242 4.242 9 C -0.146 4.146 10 N -0.203 5.203 11 C 0.034 3.966 12 C -0.471 4.471 13 H 0.117 0.883 14 C -0.198 4.198 15 N -0.376 5.376 16 Si 0.800 3.200 17 H -0.166 1.166 18 H -0.199 1.199 19 H -0.191 1.191 20 C -0.111 4.111 21 C -0.101 4.101 22 C -0.125 4.125 23 C -0.107 4.107 24 C -0.139 4.139 25 C -0.070 4.070 26 Cl -0.056 7.056 27 H 0.116 0.884 28 H 0.080 0.920 29 H 0.111 0.889 30 H 0.253 0.747 31 H 0.162 0.838 32 H 0.159 0.841 33 H 0.090 0.910 34 H 0.183 0.817 35 H 0.189 0.811 36 H 0.185 0.815 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.086 -4.955 -18.214 18.991 hybrid contribution 0.820 -0.455 1.126 1.465 sum -1.265 -5.410 -17.088 17.968 Atomic orbital electron populations 1.22303 0.90198 1.04865 1.04018 1.16237 0.95551 0.79366 0.84541 1.29680 0.91717 0.95121 0.91365 1.80946 1.10472 1.14273 1.09709 1.43791 1.63255 1.27174 0.99288 1.19297 0.99426 0.93006 0.86837 1.67359 1.16551 1.10824 1.27006 1.22626 1.09912 1.03330 0.88327 1.23481 0.97816 0.94326 0.98952 1.69453 1.16197 1.10622 1.24061 1.19448 0.95055 0.95351 0.86783 1.19665 1.28594 1.03834 0.94996 0.88340 1.26957 0.96297 1.02339 0.94221 1.70219 1.31598 1.36406 0.99362 0.85167 0.77630 0.76561 0.80594 1.16612 1.19922 1.19106 1.19503 0.92229 1.02749 0.96587 1.21526 1.00801 0.94993 0.92754 1.21723 0.96426 0.97450 0.96860 1.21649 0.93003 0.96997 0.99011 1.21324 1.02132 0.97905 0.92514 1.21234 0.90157 1.01444 0.94175 1.98434 1.61798 1.83412 1.61999 0.88363 0.91989 0.88873 0.74700 0.83779 0.84116 0.91019 0.81694 0.81121 0.81459 0.83761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.18 7.10 71.98 0.51 -3.67 16 2 C 0.33 10.79 0.61 1.05 0.00 10.79 16 3 C 0.24 9.43 10.15 89.45 0.91 10.34 16 4 N -0.48 -20.89 18.54 20.01 0.37 -20.52 16 5 N -0.69 -26.76 4.08 -315.03 -1.29 -28.04 16 6 C 0.26 12.42 6.92 134.03 0.93 13.35 16 7 N -0.50 -23.62 6.84 -190.82 -1.31 -24.93 16 8 C -0.09 -4.18 11.22 84.81 0.95 -3.23 16 9 C 0.02 0.82 11.21 84.89 0.95 1.77 16 10 N -0.48 -27.20 8.03 -188.05 -1.51 -28.71 16 11 C 0.17 8.96 6.56 40.34 0.26 9.22 16 12 C -0.44 -21.97 8.89 23.36 0.21 -21.76 16 13 H 0.10 4.43 6.12 -2.91 -0.02 4.42 16 14 C 0.02 1.17 5.50 85.31 0.47 1.64 16 15 N -0.75 -39.82 11.48 21.86 0.25 -39.57 16 16 Si 0.98 36.15 29.56 68.60 2.03 38.18 16 17 H -0.24 -8.28 7.11 99.48 0.71 -7.57 16 18 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 19 H -0.27 -9.49 7.11 99.48 0.71 -8.78 16 20 C -0.11 -2.74 4.76 -19.84 -0.09 -2.83 16 21 C -0.08 -1.37 8.98 22.27 0.20 -1.17 16 22 C -0.11 -1.22 10.05 22.27 0.22 -1.00 16 23 C -0.09 -1.10 10.05 22.27 0.22 -0.87 16 24 C -0.12 -2.29 9.83 22.29 0.22 -2.07 16 25 C -0.04 -1.14 6.01 22.32 0.13 -1.01 16 26 Cl -0.09 -2.89 25.44 -2.72 -0.07 -2.96 16 27 H 0.10 2.16 7.43 -2.39 -0.02 2.15 16 28 H 0.06 2.11 6.40 -2.39 -0.02 2.09 16 29 H 0.09 1.92 7.60 -2.39 -0.02 1.90 16 30 H 0.41 15.46 6.16 -92.71 -0.57 14.89 16 31 H 0.14 5.99 8.06 -2.91 -0.02 5.96 16 32 H 0.14 6.26 8.06 -2.91 -0.02 6.24 16 33 H 0.28 13.39 8.29 -92.71 -0.77 12.62 16 34 H 0.17 1.95 5.90 -2.91 -0.02 1.93 16 35 H 0.17 0.69 8.06 -2.91 -0.02 0.67 16 36 H 0.17 0.91 8.06 -2.91 -0.02 0.88 16 37 H 0.14 2.36 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -71.85 331.32 5.15 -66.69 By element: Atomic # 1 Polarization: 29.78 SS G_CDS: 0.58 Total: 30.36 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: 6.10 Total: 9.50 kcal Atomic # 7 Polarization: -138.29 SS G_CDS: -3.48 Total: -141.77 kcal Atomic # 14 Polarization: 36.15 SS G_CDS: 2.03 Total: 38.18 kcal Atomic # 17 Polarization: -2.89 SS G_CDS: -0.07 Total: -2.96 kcal Total: -71.85 5.15 -66.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169377580.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.022 kcal (2) G-P(sol) polarization free energy of solvation -71.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds