Wall clock time and date at job start Tue Mar 31 2020 15:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99940 * 2 1 4 4 H 1.48500 * 109.47389 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47057 * 300.00015 * 3 2 1 6 6 H 1.48495 * 109.47216 * 59.99887 * 3 2 1 7 7 C 1.37879 * 120.00409 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00516 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99661 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46953 * 60.00040 * 9 7 2 11 11 C 1.52997 * 109.47317 * 60.00071 * 10 9 7 12 12 C 1.53000 * 109.47060 * 59.99960 * 11 10 9 13 13 N 1.46901 * 109.46769 * 180.02562 * 12 11 10 14 14 C 1.46900 * 110.99890 * 204.99887 * 13 12 11 15 15 C 1.50698 * 109.47212 * 180.02562 * 14 13 12 16 16 C 1.38620 * 120.77439 * 269.71675 * 15 14 13 17 17 C 1.38344 * 119.18261 * 179.75835 * 16 15 14 18 18 Cl 1.73606 * 119.62506 * 180.25376 * 17 16 15 19 19 N 1.31980 * 120.74747 * 0.52575 * 17 16 15 20 20 C 1.31985 * 121.68805 * 359.75329 * 19 17 16 21 21 Cl 1.73599 * 119.62678 * 179.97438 * 20 19 17 22 22 C 1.38343 * 120.74857 * 359.96883 * 20 19 17 23 23 C 1.53002 * 109.47233 * 299.99657 * 12 11 10 24 24 C 1.52997 * 109.46817 * 60.00194 * 23 12 11 25 25 H 0.96998 * 120.00365 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46974 * 299.99788 * 9 7 2 27 27 H 1.08996 * 109.46929 * 299.99175 * 10 9 7 28 28 H 1.09002 * 109.46716 * 179.97438 * 10 9 7 29 29 H 1.09002 * 109.47153 * 299.99641 * 11 10 9 30 30 H 1.09001 * 109.46832 * 179.97438 * 11 10 9 31 31 H 1.08992 * 109.47399 * 59.99823 * 12 11 10 32 32 H 1.00902 * 111.00452 * 328.95177 * 13 12 11 33 33 H 1.09005 * 109.46934 * 299.99673 * 14 13 12 34 34 H 1.09002 * 109.47391 * 59.99776 * 14 13 12 35 35 H 1.08004 * 120.41031 * 0.02562 * 16 15 14 36 36 H 1.08001 * 120.40814 * 180.02562 * 22 20 19 37 37 H 1.08993 * 109.47662 * 180.02562 * 23 12 11 38 38 H 1.09002 * 109.47075 * 300.00932 * 23 12 11 39 39 H 1.09002 * 109.47153 * 60.00231 * 24 23 12 40 40 H 1.09001 * 109.47289 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 0.3720 -2.5805 -1.2490 11 6 1.2520 -2.4997 -2.4979 12 6 2.2463 -3.6627 -2.4973 13 7 3.0916 -3.5847 -3.6962 14 6 3.6171 -4.9083 -4.0567 15 6 4.4780 -4.7886 -5.2878 16 6 3.9299 -4.9301 -6.5531 17 6 4.7497 -4.8090 -7.6608 18 17 4.0741 -4.9775 -9.2511 19 7 6.0407 -4.5720 -7.5222 20 6 6.5970 -4.4373 -6.3329 21 17 8.3008 -4.1271 -6.2127 22 6 5.8377 -4.5404 -5.1811 23 6 3.1255 -3.5813 -1.2478 24 6 2.2454 -3.6621 0.0011 25 1 -0.4850 0.8400 -0.0004 26 1 0.6241 -2.5567 0.8903 27 1 -0.3364 -1.7521 -1.2494 28 1 -0.1727 -3.5247 -1.2492 29 1 1.7970 -1.5557 -2.4980 30 1 0.6257 -2.5581 -3.3881 31 1 1.7013 -4.6066 -2.4973 32 1 2.5881 -3.1732 -4.4676 33 1 4.2143 -5.2989 -3.2327 34 1 2.7875 -5.5862 -4.2575 35 1 2.8749 -5.1282 -6.6729 36 1 6.2986 -4.4288 -4.2107 37 1 3.8341 -4.4095 -1.2475 38 1 3.6704 -2.6373 -1.2478 39 1 1.7004 -4.6061 0.0012 40 1 2.8717 -3.6037 0.8914 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173328407.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:04 Heat of formation + Delta-G solvation = 3.168867 kcal Electronic energy + Delta-G solvation = -22947.942184 eV Core-core repulsion = 19427.262524 eV Total energy + Delta-G solvation = -3520.679660 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.76151 -38.32557 -37.20575 -36.87535 -35.56822 -33.18196 -31.74933 -31.24973 -29.73361 -28.51774 -25.87603 -24.44697 -24.06428 -22.36462 -21.41225 -20.54857 -18.72417 -17.55433 -17.43735 -16.27717 -15.76315 -15.43971 -15.33259 -14.99976 -14.70492 -14.56937 -14.05821 -13.51543 -13.06023 -12.79983 -12.77216 -12.74373 -12.23305 -11.87283 -11.65135 -11.54462 -11.46673 -11.35510 -11.23803 -11.03250 -10.90549 -10.55977 -10.44416 -10.17898 -10.15769 -10.09621 -9.61697 -9.25664 -9.24719 -8.90337 -8.66817 -8.32842 -8.19003 -5.96188 -4.00022 0.39686 0.60808 1.13860 1.66474 3.05028 3.30603 3.39636 3.43519 3.96146 4.34432 4.44075 4.46723 4.53539 4.60943 4.72474 5.17629 5.24418 5.34841 5.41821 5.54889 5.66168 5.81546 5.90149 5.96159 6.19167 6.40332 6.42879 6.50188 6.61111 6.70739 6.80744 7.03583 7.05486 7.16719 7.25628 7.45960 7.50759 7.57434 7.75590 7.92602 8.15051 8.49462 9.02800 9.63611 11.09810 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.013993 B = 0.002818 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.575809 B = 9934.955205 C =10461.774051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.883 3.117 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.498 4.498 8 H 0.057 0.943 9 C 0.043 3.957 10 C -0.105 4.105 11 C -0.101 4.101 12 C 0.096 3.904 13 N -0.680 5.680 14 C 0.095 3.905 15 C -0.004 4.004 16 C -0.147 4.147 17 C 0.193 3.807 18 Cl -0.022 7.022 19 N -0.479 5.479 20 C 0.192 3.808 21 Cl -0.020 7.020 22 C -0.128 4.128 23 C -0.092 4.092 24 C -0.108 4.108 25 H 0.257 0.743 26 H 0.024 0.976 27 H 0.093 0.907 28 H 0.012 0.988 29 H 0.081 0.919 30 H 0.029 0.971 31 H 0.032 0.968 32 H 0.339 0.661 33 H 0.092 0.908 34 H 0.047 0.953 35 H 0.152 0.848 36 H 0.157 0.843 37 H 0.032 0.968 38 H 0.078 0.922 39 H 0.030 0.970 40 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.471 -12.213 -13.427 20.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.712 3.288 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.213 1.213 7 C -0.536 4.536 8 H 0.075 0.925 9 C 0.025 3.975 10 C -0.144 4.144 11 C -0.139 4.139 12 C -0.012 4.012 13 N -0.311 5.311 14 C -0.034 4.034 15 C -0.013 4.013 16 C -0.169 4.169 17 C 0.028 3.972 18 Cl 0.006 6.994 19 N -0.192 5.192 20 C 0.028 3.972 21 Cl 0.009 6.991 22 C -0.149 4.149 23 C -0.130 4.130 24 C -0.146 4.146 25 H 0.067 0.933 26 H 0.042 0.958 27 H 0.111 0.889 28 H 0.031 0.969 29 H 0.099 0.901 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.158 0.842 33 H 0.110 0.890 34 H 0.065 0.935 35 H 0.169 0.831 36 H 0.175 0.825 37 H 0.051 0.949 38 H 0.096 0.904 39 H 0.049 0.951 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 9.498 -11.822 -13.941 20.600 hybrid contribution -0.664 0.526 -0.018 0.847 sum 8.834 -11.296 -13.960 20.013 Atomic orbital electron populations 1.69868 1.05839 1.26064 1.51465 1.24930 0.94739 0.98824 0.95491 0.86670 0.80337 0.84366 0.77461 1.19787 1.21192 1.21255 1.21196 0.92829 0.90325 1.49269 0.92523 1.18697 0.92673 0.92221 0.93951 1.21494 0.98657 0.99382 0.94854 1.21554 0.96312 0.98434 0.97609 1.21628 0.92590 0.97931 0.89086 1.60609 1.42947 1.19476 1.08075 1.20994 0.96740 0.92536 0.93129 1.20322 0.93507 0.92554 0.94874 1.21874 1.01793 1.02368 0.90851 1.21335 0.88840 0.99027 0.87967 1.98426 1.82260 1.95498 1.23168 1.66187 1.12070 1.13993 1.26993 1.21415 0.88146 0.98836 0.88817 1.98429 1.09607 1.93461 1.97611 1.21893 0.93661 1.00087 0.99288 1.21395 0.97016 1.01336 0.93263 1.21573 0.98324 0.98449 0.96262 0.93255 0.95832 0.88902 0.96913 0.90083 0.95184 0.95023 0.84230 0.88980 0.93458 0.83056 0.82542 0.94881 0.90378 0.95092 0.93401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.61 11.32 55.43 0.63 -23.98 16 2 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 3 Si 0.88 20.83 29.54 -169.99 -5.02 15.81 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.50 -12.78 6.61 -34.44 -0.23 -13.01 16 8 H 0.06 1.46 6.71 -52.49 -0.35 1.11 16 9 C 0.04 1.01 2.59 -91.77 -0.24 0.77 16 10 C -0.11 -2.32 5.24 -26.73 -0.14 -2.46 16 11 C -0.10 -1.93 4.97 -26.73 -0.13 -2.07 16 12 C 0.10 1.54 2.49 -67.71 -0.17 1.37 16 13 N -0.68 -9.07 6.30 -107.99 -0.68 -9.75 16 14 C 0.09 0.99 5.66 -4.98 -0.03 0.96 16 15 C 0.00 -0.04 5.43 -104.34 -0.57 -0.60 16 16 C -0.15 -1.41 9.58 -39.40 -0.38 -1.79 16 17 C 0.19 2.12 7.27 -17.45 -0.13 1.99 16 18 Cl -0.02 -0.22 29.11 -51.86 -1.51 -1.73 16 19 N -0.48 -5.93 10.32 -7.49 -0.08 -6.00 16 20 C 0.19 2.19 7.27 -17.45 -0.13 2.06 16 21 Cl -0.02 -0.20 29.11 -51.86 -1.51 -1.71 16 22 C -0.13 -1.32 9.58 -39.40 -0.38 -1.70 16 23 C -0.09 -1.61 5.20 -26.73 -0.14 -1.75 16 24 C -0.11 -2.10 5.41 -26.73 -0.14 -2.25 16 25 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 26 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.09 2.34 6.07 -51.93 -0.32 2.02 16 28 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.08 1.77 7.22 -51.93 -0.37 1.40 16 30 H 0.03 0.52 8.12 -51.93 -0.42 0.09 16 31 H 0.03 0.49 7.80 -51.93 -0.41 0.09 16 32 H 0.34 4.33 8.34 -39.29 -0.33 4.00 16 33 H 0.09 0.94 7.39 -51.93 -0.38 0.56 16 34 H 0.05 0.44 8.02 -51.93 -0.42 0.03 16 35 H 0.15 1.14 8.06 -52.48 -0.42 0.72 16 36 H 0.16 1.42 8.06 -52.49 -0.42 1.00 16 37 H 0.03 0.50 7.45 -51.93 -0.39 0.12 16 38 H 0.08 1.56 6.62 -51.93 -0.34 1.21 16 39 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 350.34 15.07 5.28 5.28 Total: -1.00 -27.12 350.34 -11.18 -38.30 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -5.40 Total: 0.76 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: -2.89 Total: -16.97 kcal Atomic # 7 Polarization: -39.61 SS G_CDS: -0.13 Total: -39.74 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -3.02 Total: -3.44 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -27.12 -11.18 -38.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328407.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.468 kcal (2) G-P(sol) polarization free energy of solvation -27.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds