Wall clock time and date at job start Tue Mar 31 2020 15:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99940 * 2 1 4 4 H 1.48500 * 109.47389 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47057 * 300.00015 * 3 2 1 6 6 H 1.48495 * 109.47216 * 59.99887 * 3 2 1 7 7 C 1.37879 * 120.00409 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00516 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99661 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46953 * 60.00040 * 9 7 2 11 11 C 1.52997 * 109.47317 * 60.00071 * 10 9 7 12 12 C 1.53000 * 109.47060 * 59.99960 * 11 10 9 13 13 N 1.46901 * 109.46769 * 180.02562 * 12 11 10 14 14 C 1.46900 * 110.99890 * 204.99887 * 13 12 11 15 15 C 1.50698 * 109.47212 * 180.02562 * 14 13 12 16 16 C 1.38620 * 120.77439 * 269.71675 * 15 14 13 17 17 C 1.38344 * 119.18261 * 179.75835 * 16 15 14 18 18 Cl 1.73606 * 119.62506 * 180.25376 * 17 16 15 19 19 N 1.31980 * 120.74747 * 0.52575 * 17 16 15 20 20 C 1.31985 * 121.68805 * 359.75329 * 19 17 16 21 21 Cl 1.73599 * 119.62678 * 179.97438 * 20 19 17 22 22 C 1.38343 * 120.74857 * 359.96883 * 20 19 17 23 23 C 1.53002 * 109.47233 * 299.99657 * 12 11 10 24 24 C 1.52997 * 109.46817 * 60.00194 * 23 12 11 25 25 H 0.96998 * 120.00365 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46974 * 299.99788 * 9 7 2 27 27 H 1.08996 * 109.46929 * 299.99175 * 10 9 7 28 28 H 1.09002 * 109.46716 * 179.97438 * 10 9 7 29 29 H 1.09002 * 109.47153 * 299.99641 * 11 10 9 30 30 H 1.09001 * 109.46832 * 179.97438 * 11 10 9 31 31 H 1.08992 * 109.47399 * 59.99823 * 12 11 10 32 32 H 1.00902 * 111.00452 * 328.95177 * 13 12 11 33 33 H 1.09005 * 109.46934 * 299.99673 * 14 13 12 34 34 H 1.09002 * 109.47391 * 59.99776 * 14 13 12 35 35 H 1.08004 * 120.41031 * 0.02562 * 16 15 14 36 36 H 1.08001 * 120.40814 * 180.02562 * 22 20 19 37 37 H 1.08993 * 109.47662 * 180.02562 * 23 12 11 38 38 H 1.09002 * 109.47075 * 300.00932 * 23 12 11 39 39 H 1.09002 * 109.47153 * 60.00231 * 24 23 12 40 40 H 1.09001 * 109.47289 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 0.3720 -2.5805 -1.2490 11 6 1.2520 -2.4997 -2.4979 12 6 2.2463 -3.6627 -2.4973 13 7 3.0916 -3.5847 -3.6962 14 6 3.6171 -4.9083 -4.0567 15 6 4.4780 -4.7886 -5.2878 16 6 3.9299 -4.9301 -6.5531 17 6 4.7497 -4.8090 -7.6608 18 17 4.0741 -4.9775 -9.2511 19 7 6.0407 -4.5720 -7.5222 20 6 6.5970 -4.4373 -6.3329 21 17 8.3008 -4.1271 -6.2127 22 6 5.8377 -4.5404 -5.1811 23 6 3.1255 -3.5813 -1.2478 24 6 2.2454 -3.6621 0.0011 25 1 -0.4850 0.8400 -0.0004 26 1 0.6241 -2.5567 0.8903 27 1 -0.3364 -1.7521 -1.2494 28 1 -0.1727 -3.5247 -1.2492 29 1 1.7970 -1.5557 -2.4980 30 1 0.6257 -2.5581 -3.3881 31 1 1.7013 -4.6066 -2.4973 32 1 2.5881 -3.1732 -4.4676 33 1 4.2143 -5.2989 -3.2327 34 1 2.7875 -5.5862 -4.2575 35 1 2.8749 -5.1282 -6.6729 36 1 6.2986 -4.4288 -4.2107 37 1 3.8341 -4.4095 -1.2475 38 1 3.6704 -2.6373 -1.2478 39 1 1.7004 -4.6061 0.0012 40 1 2.8717 -3.6037 0.8914 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173328407.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:03 Heat of formation + Delta-G solvation = -11.285681 kcal Electronic energy + Delta-G solvation = -22948.568981 eV Core-core repulsion = 19427.262524 eV Total energy + Delta-G solvation = -3521.306456 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.55732 -39.74431 -37.98044 -37.69405 -36.72813 -34.56815 -33.29420 -32.02190 -31.27777 -29.92900 -27.22265 -26.05340 -24.85037 -23.45125 -22.74132 -21.96457 -20.41662 -18.40643 -18.26671 -17.66086 -17.00807 -16.68602 -16.44352 -16.20362 -15.88856 -15.63865 -15.42545 -14.79785 -14.70005 -14.29666 -13.70032 -13.55191 -13.30686 -13.13304 -12.89144 -12.88401 -12.69797 -12.60308 -12.51919 -12.35754 -12.30928 -12.24198 -12.10313 -11.71174 -11.37512 -11.10933 -10.98187 -10.85236 -10.60793 -10.44033 -10.24709 -10.02334 -9.28330 -7.99613 -6.08216 -0.37345 -0.18657 0.36688 0.87612 1.40601 1.45140 1.53895 2.24928 2.48740 3.12730 3.29283 3.46253 3.58869 3.75342 3.89096 3.95387 4.14280 4.20944 4.44042 4.52711 4.56929 4.67978 4.76285 4.85251 4.94467 4.96289 5.04519 5.06289 5.12207 5.15261 5.28986 5.49985 5.66795 5.68755 5.73834 5.80350 6.04127 6.20518 6.25963 6.30460 6.50238 6.52219 7.02395 7.57647 9.05115 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.013993 B = 0.002818 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.575809 B = 9934.955205 C =10461.774051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.015 3.985 3 Si 0.936 3.064 4 H -0.268 1.268 5 H -0.285 1.285 6 H -0.287 1.287 7 C -0.499 4.499 8 H 0.052 0.948 9 C 0.036 3.964 10 C -0.102 4.102 11 C -0.094 4.094 12 C 0.110 3.890 13 N -0.687 5.687 14 C 0.099 3.901 15 C -0.004 4.004 16 C -0.137 4.137 17 C 0.179 3.821 18 Cl -0.018 7.018 19 N -0.502 5.502 20 C 0.178 3.822 21 Cl -0.020 7.020 22 C -0.127 4.127 23 C -0.087 4.087 24 C -0.103 4.103 25 H 0.255 0.745 26 H -0.015 1.015 27 H 0.055 0.945 28 H 0.029 0.971 29 H 0.047 0.953 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.344 0.656 33 H 0.099 0.901 34 H 0.068 0.932 35 H 0.175 0.825 36 H 0.168 0.832 37 H 0.064 0.936 38 H 0.050 0.950 39 H 0.051 0.949 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.121 -13.674 -14.323 21.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.183 4.183 3 Si 0.764 3.236 4 H -0.193 1.193 5 H -0.212 1.212 6 H -0.213 1.213 7 C -0.537 4.537 8 H 0.070 0.930 9 C 0.018 3.982 10 C -0.140 4.140 11 C -0.132 4.132 12 C 0.001 3.999 13 N -0.319 5.319 14 C -0.029 4.029 15 C -0.012 4.012 16 C -0.159 4.159 17 C 0.015 3.985 18 Cl 0.011 6.989 19 N -0.216 5.216 20 C 0.015 3.985 21 Cl 0.009 6.991 22 C -0.148 4.148 23 C -0.125 4.125 24 C -0.141 4.141 25 H 0.065 0.935 26 H 0.004 0.996 27 H 0.074 0.926 28 H 0.047 0.953 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.163 0.837 33 H 0.117 0.883 34 H 0.086 0.914 35 H 0.192 0.808 36 H 0.186 0.814 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 10.164 -13.290 -14.844 22.367 hybrid contribution -0.876 0.956 0.260 1.323 sum 9.288 -12.334 -14.584 21.239 Atomic orbital electron populations 1.70006 1.06938 1.26403 1.52710 1.25559 0.95382 1.01591 0.95761 0.85833 0.79450 0.81200 0.77160 1.19279 1.21171 1.21321 1.21452 0.92705 0.91512 1.48073 0.92986 1.18711 0.93233 0.93167 0.93100 1.21336 0.98346 0.98647 0.95696 1.21388 0.96593 0.98423 0.96761 1.21328 0.91899 0.96987 0.89713 1.60462 1.42340 1.21614 1.07466 1.21026 0.97344 0.91199 0.93365 1.20308 0.93277 0.92701 0.94963 1.22101 1.02697 1.00888 0.90167 1.21552 0.88732 0.99507 0.88690 1.98425 1.82052 1.95487 1.22950 1.66144 1.13001 1.14708 1.27740 1.21554 0.88413 0.99574 0.88995 1.98424 1.09575 1.93502 1.97596 1.22064 0.93935 0.99369 0.99419 1.21305 0.97113 1.01097 0.92941 1.21476 0.97747 0.97451 0.97425 0.93533 0.99646 0.92613 0.95263 0.93397 0.93302 0.93199 0.83677 0.88278 0.91377 0.80776 0.81421 0.91773 0.93167 0.93023 0.93856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.07 11.32 21.45 0.24 -51.83 16 2 C 0.01 0.79 5.30 84.66 0.45 1.24 16 3 Si 0.94 43.30 29.54 68.60 2.03 45.32 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 6 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 7 C -0.50 -25.99 6.61 25.60 0.17 -25.82 16 8 H 0.05 2.71 6.71 -2.91 -0.02 2.69 16 9 C 0.04 1.71 2.59 -11.54 -0.03 1.68 16 10 C -0.10 -4.45 5.24 30.59 0.16 -4.29 16 11 C -0.09 -3.45 4.97 30.59 0.15 -3.30 16 12 C 0.11 3.17 2.49 44.92 0.11 3.28 16 13 N -0.69 -16.01 6.30 -495.57 -3.12 -19.13 16 14 C 0.10 1.64 5.66 85.56 0.48 2.12 16 15 C 0.00 -0.06 5.43 -19.68 -0.11 -0.17 16 16 C -0.14 -2.22 9.58 22.39 0.21 -2.01 16 17 C 0.18 3.60 7.27 84.70 0.62 4.22 16 18 Cl -0.02 -0.32 29.11 -2.72 -0.08 -0.40 16 19 N -0.50 -11.76 10.32 -177.62 -1.83 -13.59 16 20 C 0.18 3.80 7.27 84.69 0.62 4.42 16 21 Cl -0.02 -0.39 29.11 -2.72 -0.08 -0.47 16 22 C -0.13 -2.32 9.58 22.39 0.21 -2.10 16 23 C -0.09 -2.81 5.20 30.59 0.16 -2.65 16 24 C -0.10 -3.85 5.41 30.60 0.17 -3.69 16 25 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 26 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 27 H 0.06 2.87 6.07 -2.39 -0.01 2.85 16 28 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.05 2.08 7.22 -2.39 -0.02 2.06 16 30 H 0.05 1.59 8.12 -2.39 -0.02 1.57 16 31 H 0.05 1.31 7.80 -2.39 -0.02 1.29 16 32 H 0.34 7.65 8.34 -89.69 -0.75 6.90 16 33 H 0.10 1.56 7.39 -2.38 -0.02 1.54 16 34 H 0.07 0.91 8.02 -2.39 -0.02 0.90 16 35 H 0.17 1.95 8.06 -2.91 -0.02 1.92 16 36 H 0.17 2.61 8.06 -2.91 -0.02 2.59 16 37 H 0.06 1.71 7.45 -2.39 -0.02 1.69 16 38 H 0.05 1.92 6.62 -2.39 -0.02 1.91 16 39 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -59.61 350.34 0.85 -58.76 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: 0.32 Total: 8.40 kcal Atomic # 6 Polarization: -30.44 SS G_CDS: 3.38 Total: -27.06 kcal Atomic # 7 Polarization: -79.84 SS G_CDS: -4.71 Total: -84.55 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -0.16 Total: -0.87 kcal Total: -59.61 0.85 -58.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328407.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.475 kcal (2) G-P(sol) polarization free energy of solvation -59.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds