Wall clock time and date at job start Tue Mar 31 2020 15:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86808 * 119.99419 * 2 1 4 4 H 1.48493 * 109.46876 * 269.99449 * 3 2 1 5 5 H 1.48492 * 109.47445 * 29.99737 * 3 2 1 6 6 H 1.48504 * 109.46743 * 149.99868 * 3 2 1 7 7 C 1.37870 * 120.00448 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00236 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00201 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47404 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47023 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47267 * 299.99794 * 11 10 9 13 13 N 1.46901 * 109.47187 * 179.97438 * 12 11 10 14 14 C 1.46905 * 110.99870 * 154.99992 * 13 12 11 15 15 C 1.50697 * 109.47066 * 180.02562 * 14 13 12 16 16 C 1.38738 * 120.80189 * 269.72447 * 15 14 13 17 17 Cl 1.73597 * 120.42472 * 359.97438 * 16 15 14 18 18 C 1.38337 * 119.14848 * 179.71387 * 16 15 14 19 19 N 1.31855 * 120.77303 * 0.56830 * 18 16 15 20 20 C 1.31854 * 121.75310 * 359.72615 * 19 18 16 21 21 C 1.38334 * 120.77295 * 359.97172 * 20 19 18 22 22 Cl 1.73605 * 120.42301 * 180.02562 * 21 20 19 23 23 C 1.53003 * 109.46931 * 60.00150 * 12 11 10 24 24 C 1.52996 * 109.47260 * 299.99693 * 23 12 11 25 25 H 0.96993 * 120.00532 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47233 * 59.99911 * 9 7 2 27 27 H 1.09000 * 109.46837 * 59.99938 * 10 9 7 28 28 H 1.08998 * 109.46944 * 299.99770 * 10 9 7 29 29 H 1.08995 * 109.47174 * 180.02562 * 11 10 9 30 30 H 1.08996 * 109.47449 * 59.99724 * 11 10 9 31 31 H 1.09000 * 109.47284 * 300.00517 * 12 11 10 32 32 H 1.00901 * 111.00067 * 278.95167 * 13 12 11 33 33 H 1.09001 * 109.46798 * 300.00327 * 14 13 12 34 34 H 1.08998 * 109.46961 * 60.00043 * 14 13 12 35 35 H 1.08006 * 119.61108 * 180.31856 * 18 16 15 36 36 H 1.07998 * 119.61284 * 179.97438 * 20 19 18 37 37 H 1.08996 * 109.47234 * 60.00407 * 23 12 11 38 38 H 1.09007 * 109.47106 * 180.02562 * 23 12 11 39 39 H 1.08996 * 109.47580 * 300.00502 * 24 23 12 40 40 H 1.08995 * 109.47412 * 179.97438 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6528 0.6999 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 3.0847 -1.1939 0.0010 9 6 1.2513 -2.4991 0.0017 10 6 2.2456 -3.6620 0.0027 11 6 1.4807 -4.9870 0.0033 12 6 0.6007 -5.0674 1.2523 13 7 -0.1343 -6.3394 1.2525 14 6 -0.5015 -6.7350 2.6188 15 6 -1.2515 -8.0414 2.5790 16 6 -2.6337 -8.0638 2.4614 17 17 -3.5313 -6.5815 2.3579 18 6 -3.2870 -9.2826 2.4222 19 7 -2.6126 -10.4125 2.5063 20 6 -1.2995 -10.4297 2.6248 21 6 -0.5770 -9.2507 2.6648 22 17 1.1518 -9.2839 2.8203 23 6 -0.3937 -3.9045 1.2512 24 6 0.3712 -2.5795 1.2508 25 1 -0.4850 0.8399 -0.0004 26 1 0.6243 -2.5575 -0.8880 27 1 2.8722 -3.6034 0.8927 28 1 2.8722 -3.6050 -0.8873 29 1 2.1890 -5.8154 0.0045 30 1 0.8543 -5.0454 -0.8868 31 1 1.2270 -5.0090 2.1424 32 1 -0.9493 -6.2862 0.6600 33 1 0.4014 -6.8528 3.2179 34 1 -1.1339 -5.9659 3.0621 35 1 -4.3624 -9.3088 2.3256 36 1 -0.7820 -11.3753 2.6914 37 1 -1.0201 -3.9629 0.3612 38 1 -1.0204 -3.9615 2.1413 39 1 0.9976 -2.5211 2.1409 40 1 -0.3371 -1.7511 1.2496 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173329774.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:43 Heat of formation + Delta-G solvation = 0.817101 kcal Electronic energy + Delta-G solvation = -23169.856491 eV Core-core repulsion = 19649.074851 eV Total energy + Delta-G solvation = -3520.781640 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.79554 -38.30861 -37.10671 -36.88058 -35.43012 -33.18797 -31.76930 -31.31765 -29.68042 -28.70561 -26.04408 -24.03228 -23.97099 -22.29719 -21.53076 -20.62296 -18.88678 -17.57539 -17.43276 -16.58061 -16.30919 -15.39777 -15.20274 -14.85674 -14.55462 -14.36758 -13.89565 -13.37563 -13.10124 -12.90341 -12.69623 -12.61994 -12.39857 -12.10761 -12.07059 -11.79143 -11.59702 -11.33770 -11.16625 -11.01571 -10.77603 -10.47438 -10.40723 -10.16480 -10.05655 -9.93511 -9.78569 -9.38818 -9.25524 -9.00948 -8.67659 -8.32943 -8.07441 -5.96568 -4.02544 0.36137 0.52953 1.47679 1.85744 3.07370 3.30598 3.37494 3.40723 3.95464 4.00340 4.13136 4.44421 4.51500 4.55411 4.69432 5.07761 5.21467 5.31224 5.37804 5.53738 5.60413 5.67467 5.85550 5.92120 6.17165 6.26435 6.30386 6.40320 6.63478 6.65700 6.81786 6.90790 7.10010 7.20086 7.26515 7.29925 7.47511 7.54667 7.76616 8.04171 8.16981 8.49644 9.01929 9.62111 11.08773 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.020383 B = 0.002972 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.348318 B = 9419.879609 C =10498.559010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.511 4.511 8 H 0.053 0.947 9 C 0.049 3.951 10 C -0.108 4.108 11 C -0.099 4.099 12 C 0.093 3.907 13 N -0.674 5.674 14 C 0.086 3.914 15 C -0.017 4.017 16 C -0.079 4.079 17 Cl -0.034 7.034 18 C 0.115 3.885 19 N -0.457 5.457 20 C 0.113 3.887 21 C -0.062 4.062 22 Cl -0.030 7.030 23 C -0.142 4.142 24 C -0.105 4.105 25 H 0.258 0.742 26 H 0.024 0.976 27 H 0.046 0.954 28 H 0.048 0.952 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.339 0.661 33 H 0.093 0.907 34 H 0.056 0.944 35 H 0.171 0.829 36 H 0.171 0.829 37 H 0.054 0.946 38 H 0.038 0.962 39 H 0.032 0.968 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.513 -20.078 6.903 21.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.716 3.284 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.550 4.550 8 H 0.072 0.928 9 C 0.031 3.969 10 C -0.146 4.146 11 C -0.137 4.137 12 C -0.016 4.016 13 N -0.304 5.304 14 C -0.043 4.043 15 C -0.027 4.027 16 C -0.109 4.109 17 Cl -0.005 7.005 18 C -0.043 4.043 19 N -0.166 5.166 20 C -0.045 4.045 21 C -0.092 4.092 22 Cl -0.001 7.001 23 C -0.181 4.181 24 C -0.143 4.143 25 H 0.068 0.932 26 H 0.042 0.958 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.157 0.843 33 H 0.111 0.889 34 H 0.074 0.926 35 H 0.188 0.812 36 H 0.189 0.811 37 H 0.072 0.928 38 H 0.057 0.943 39 H 0.051 0.949 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.457 -20.998 6.881 22.761 hybrid contribution 0.152 2.507 0.239 2.523 sum -5.305 -18.491 7.120 20.512 Atomic orbital electron populations 1.69871 1.05837 1.26222 1.51120 1.24966 0.94823 0.98965 0.95276 0.86663 0.79925 0.83765 0.78052 1.20770 1.21336 1.19986 1.21253 0.92886 0.90823 1.50011 0.92832 1.18649 0.92617 0.91572 0.94109 1.21627 0.98614 0.94294 1.00110 1.21472 0.97826 0.98010 0.96403 1.21665 0.94921 0.85559 0.99447 1.60779 1.28275 1.33856 1.07515 1.21027 0.99145 0.90575 0.93549 1.20170 0.91636 0.96236 0.94634 1.22066 0.92284 0.90210 1.06346 1.98430 1.73663 1.32123 1.96253 1.22891 1.01139 0.85556 0.94728 1.67957 1.08015 1.28629 1.11996 1.22921 0.89537 0.97294 0.94749 1.21929 0.87624 0.94492 1.05160 1.98412 1.07426 1.98571 1.95687 1.22279 0.98035 0.97975 0.99857 1.21548 0.99463 0.94517 0.98820 0.93158 0.95817 0.93520 0.93360 0.92973 0.92777 0.90976 0.84310 0.88883 0.92553 0.81156 0.81149 0.92757 0.94294 0.94915 0.89145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.26 11.32 55.43 0.63 -24.63 16 2 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 3 Si 0.89 21.24 29.54 -169.99 -5.02 16.21 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.51 -13.92 8.56 -34.44 -0.29 -14.21 16 8 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 9 C 0.05 1.19 2.10 -91.77 -0.19 0.99 16 10 C -0.11 -2.21 5.14 -26.73 -0.14 -2.34 16 11 C -0.10 -1.71 5.53 -26.73 -0.15 -1.85 16 12 C 0.09 1.49 2.47 -67.71 -0.17 1.32 16 13 N -0.67 -9.17 6.24 -107.99 -0.67 -9.84 16 14 C 0.09 1.03 4.92 -4.97 -0.02 1.01 16 15 C -0.02 -0.19 5.44 -104.26 -0.57 -0.75 16 16 C -0.08 -0.80 6.34 -39.36 -0.25 -1.05 16 17 Cl -0.03 -0.35 27.47 -51.86 -1.42 -1.77 16 18 C 0.11 1.05 10.99 -17.51 -0.19 0.86 16 19 N -0.46 -4.51 10.36 -13.19 -0.14 -4.65 16 20 C 0.11 1.02 10.99 -17.51 -0.19 0.83 16 21 C -0.06 -0.63 6.34 -39.36 -0.25 -0.88 16 22 Cl -0.03 -0.30 27.48 -51.86 -1.42 -1.73 16 23 C -0.14 -2.60 5.17 -26.73 -0.14 -2.74 16 24 C -0.10 -2.39 4.98 -26.73 -0.13 -2.52 16 25 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 26 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.07 1.18 7.80 -51.93 -0.41 0.78 16 32 H 0.34 4.63 8.46 -39.29 -0.33 4.30 16 33 H 0.09 1.12 6.94 -51.93 -0.36 0.76 16 34 H 0.06 0.70 6.31 -51.93 -0.33 0.37 16 35 H 0.17 1.14 8.06 -52.48 -0.42 0.72 16 36 H 0.17 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.05 1.02 8.13 -51.93 -0.42 0.60 16 38 H 0.04 0.66 7.45 -51.92 -0.39 0.28 16 39 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 LS Contribution 350.17 15.07 5.28 5.28 Total: -1.00 -27.91 350.17 -11.03 -38.94 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -5.47 Total: 1.97 kcal Atomic # 6 Polarization: -16.99 SS G_CDS: -2.78 Total: -19.78 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: -0.18 Total: -39.12 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -2.85 Total: -3.50 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -27.91 -11.03 -38.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329774.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.753 kcal (2) G-P(sol) polarization free energy of solvation -27.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds