Wall clock time and date at job start Tue Mar 31 2020 15:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86808 * 119.99419 * 2 1 4 4 H 1.48493 * 109.46876 * 269.99449 * 3 2 1 5 5 H 1.48492 * 109.47445 * 29.99737 * 3 2 1 6 6 H 1.48504 * 109.46743 * 149.99868 * 3 2 1 7 7 C 1.37870 * 120.00448 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00236 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00201 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47404 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47023 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47267 * 299.99794 * 11 10 9 13 13 N 1.46901 * 109.47187 * 179.97438 * 12 11 10 14 14 C 1.46905 * 110.99870 * 154.99992 * 13 12 11 15 15 C 1.50697 * 109.47066 * 180.02562 * 14 13 12 16 16 C 1.38738 * 120.80189 * 269.72447 * 15 14 13 17 17 Cl 1.73597 * 120.42472 * 359.97438 * 16 15 14 18 18 C 1.38337 * 119.14848 * 179.71387 * 16 15 14 19 19 N 1.31855 * 120.77303 * 0.56830 * 18 16 15 20 20 C 1.31854 * 121.75310 * 359.72615 * 19 18 16 21 21 C 1.38334 * 120.77295 * 359.97172 * 20 19 18 22 22 Cl 1.73605 * 120.42301 * 180.02562 * 21 20 19 23 23 C 1.53003 * 109.46931 * 60.00150 * 12 11 10 24 24 C 1.52996 * 109.47260 * 299.99693 * 23 12 11 25 25 H 0.96993 * 120.00532 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47233 * 59.99911 * 9 7 2 27 27 H 1.09000 * 109.46837 * 59.99938 * 10 9 7 28 28 H 1.08998 * 109.46944 * 299.99770 * 10 9 7 29 29 H 1.08995 * 109.47174 * 180.02562 * 11 10 9 30 30 H 1.08996 * 109.47449 * 59.99724 * 11 10 9 31 31 H 1.09000 * 109.47284 * 300.00517 * 12 11 10 32 32 H 1.00901 * 111.00067 * 278.95167 * 13 12 11 33 33 H 1.09001 * 109.46798 * 300.00327 * 14 13 12 34 34 H 1.08998 * 109.46961 * 60.00043 * 14 13 12 35 35 H 1.08006 * 119.61108 * 180.31856 * 18 16 15 36 36 H 1.07998 * 119.61284 * 179.97438 * 20 19 18 37 37 H 1.08996 * 109.47234 * 60.00407 * 23 12 11 38 38 H 1.09007 * 109.47106 * 180.02562 * 23 12 11 39 39 H 1.08996 * 109.47580 * 300.00502 * 24 23 12 40 40 H 1.08995 * 109.47412 * 179.97438 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6528 0.6999 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 3.0847 -1.1939 0.0010 9 6 1.2513 -2.4991 0.0017 10 6 2.2456 -3.6620 0.0027 11 6 1.4807 -4.9870 0.0033 12 6 0.6007 -5.0674 1.2523 13 7 -0.1343 -6.3394 1.2525 14 6 -0.5015 -6.7350 2.6188 15 6 -1.2515 -8.0414 2.5790 16 6 -2.6337 -8.0638 2.4614 17 17 -3.5313 -6.5815 2.3579 18 6 -3.2870 -9.2826 2.4222 19 7 -2.6126 -10.4125 2.5063 20 6 -1.2995 -10.4297 2.6248 21 6 -0.5770 -9.2507 2.6648 22 17 1.1518 -9.2839 2.8203 23 6 -0.3937 -3.9045 1.2512 24 6 0.3712 -2.5795 1.2508 25 1 -0.4850 0.8399 -0.0004 26 1 0.6243 -2.5575 -0.8880 27 1 2.8722 -3.6034 0.8927 28 1 2.8722 -3.6050 -0.8873 29 1 2.1890 -5.8154 0.0045 30 1 0.8543 -5.0454 -0.8868 31 1 1.2270 -5.0090 2.1424 32 1 -0.9493 -6.2862 0.6600 33 1 0.4014 -6.8528 3.2179 34 1 -1.1339 -5.9659 3.0621 35 1 -4.3624 -9.3088 2.3256 36 1 -0.7820 -11.3753 2.6914 37 1 -1.0201 -3.9629 0.3612 38 1 -1.0204 -3.9615 2.1413 39 1 0.9976 -2.5211 2.1409 40 1 -0.3371 -1.7511 1.2496 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173329774.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:43 Heat of formation + Delta-G solvation = -14.058300 kcal Electronic energy + Delta-G solvation = -23170.501537 eV Core-core repulsion = 19649.074851 eV Total energy + Delta-G solvation = -3521.426686 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.55521 -39.76230 -37.88790 -37.68067 -36.71697 -34.73055 -33.21878 -32.03918 -31.31095 -30.21814 -27.36027 -25.65489 -24.73922 -23.33159 -23.02127 -22.15759 -20.54110 -18.38426 -18.37485 -18.23484 -17.37130 -16.68713 -16.38169 -16.24501 -15.57812 -15.36436 -15.12072 -14.91898 -14.47681 -14.36861 -14.01910 -13.78885 -13.46136 -13.39159 -13.05265 -12.90554 -12.86418 -12.84731 -12.59530 -12.53587 -12.21057 -12.10912 -11.97854 -11.77580 -11.69680 -11.19541 -10.84946 -10.80250 -10.62745 -10.53691 -10.35401 -9.98183 -9.34262 -8.06346 -6.20176 -0.35747 -0.25764 0.70944 1.09534 1.39915 1.41054 1.50732 2.33401 2.43676 3.07191 3.19741 3.31068 3.37772 3.47971 3.78013 3.92331 3.95747 4.14105 4.31073 4.42747 4.45502 4.59285 4.63194 4.66933 4.80193 4.83189 4.85957 4.98378 5.11332 5.16230 5.25728 5.31863 5.41080 5.48981 5.61541 5.69575 5.99975 6.06278 6.23005 6.33170 6.44252 6.55018 6.93064 7.47780 8.96873 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.020383 B = 0.002972 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.348318 B = 9419.879609 C =10498.559010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.012 3.988 3 Si 0.949 3.051 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.533 4.533 8 H 0.050 0.950 9 C 0.046 3.954 10 C -0.101 4.101 11 C -0.090 4.090 12 C 0.106 3.894 13 N -0.667 5.667 14 C 0.089 3.911 15 C -0.027 4.027 16 C -0.084 4.084 17 Cl -0.040 7.040 18 C 0.119 3.881 19 N -0.467 5.467 20 C 0.118 3.882 21 C -0.068 4.068 22 Cl -0.031 7.031 23 C -0.130 4.130 24 C -0.097 4.097 25 H 0.258 0.742 26 H -0.009 1.009 27 H 0.048 0.952 28 H 0.045 0.955 29 H 0.072 0.928 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.341 0.659 33 H 0.095 0.905 34 H 0.053 0.947 35 H 0.193 0.807 36 H 0.196 0.804 37 H 0.046 0.954 38 H 0.051 0.949 39 H 0.027 0.973 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.272 -21.689 7.458 23.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.186 4.186 3 Si 0.775 3.225 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.572 4.572 8 H 0.068 0.932 9 C 0.028 3.972 10 C -0.139 4.139 11 C -0.129 4.129 12 C -0.004 4.004 13 N -0.296 5.296 14 C -0.040 4.040 15 C -0.037 4.037 16 C -0.114 4.114 17 Cl -0.011 7.011 18 C -0.039 4.039 19 N -0.176 5.176 20 C -0.040 4.040 21 C -0.097 4.097 22 Cl -0.002 7.002 23 C -0.169 4.169 24 C -0.136 4.136 25 H 0.068 0.932 26 H 0.009 0.991 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.091 0.909 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.159 0.841 33 H 0.113 0.887 34 H 0.071 0.929 35 H 0.210 0.790 36 H 0.212 0.788 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.046 0.954 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.214 -22.625 7.437 24.380 hybrid contribution 0.053 2.978 0.063 2.979 sum -5.161 -19.647 7.500 21.654 Atomic orbital electron populations 1.70017 1.07070 1.26858 1.51687 1.25716 0.95645 1.02223 0.95061 0.85697 0.78854 0.79818 0.78142 1.20313 1.21008 1.19312 1.21656 0.93006 0.92497 1.50005 0.93202 1.18621 0.93064 0.92283 0.93259 1.21490 0.97887 0.94496 1.00040 1.21364 0.98023 0.96644 0.96823 1.21416 0.94314 0.85689 0.98945 1.60709 1.28434 1.31761 1.08688 1.20987 0.99373 0.91240 0.92375 1.20094 0.91961 0.95886 0.95723 1.22106 0.92039 0.90352 1.06856 1.98430 1.73755 1.32583 1.96326 1.23252 1.02187 0.84953 0.93480 1.68046 1.08397 1.28805 1.12359 1.23315 0.89362 0.97931 0.93343 1.21992 0.87637 0.94577 1.05534 1.98412 1.07496 1.98565 1.95723 1.22126 0.98136 0.96532 1.00083 1.21327 0.98656 0.95849 0.97751 0.93243 0.99123 0.93336 0.93644 0.90944 0.93174 0.90674 0.84145 0.88687 0.92903 0.78986 0.78758 0.93565 0.92991 0.95445 0.92735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.24 11.32 21.44 0.24 -53.00 16 2 C 0.01 0.66 5.30 84.65 0.45 1.11 16 3 Si 0.95 43.94 29.54 68.60 2.03 45.97 16 4 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 5 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 7 C -0.53 -29.58 8.56 25.60 0.22 -29.36 16 8 H 0.05 2.73 7.74 -2.91 -0.02 2.70 16 9 C 0.05 2.29 2.10 -11.54 -0.02 2.27 16 10 C -0.10 -4.09 5.14 30.59 0.16 -3.93 16 11 C -0.09 -3.00 5.53 30.59 0.17 -2.83 16 12 C 0.11 3.25 2.47 44.92 0.11 3.36 16 13 N -0.67 -16.96 6.24 -495.56 -3.09 -20.05 16 14 C 0.09 1.99 4.92 85.55 0.42 2.41 16 15 C -0.03 -0.54 5.44 -19.63 -0.11 -0.65 16 16 C -0.08 -1.55 6.34 22.41 0.14 -1.41 16 17 Cl -0.04 -0.78 27.47 -2.72 -0.07 -0.86 16 18 C 0.12 1.91 10.99 84.71 0.93 2.84 16 19 N -0.47 -8.10 10.36 -195.65 -2.03 -10.13 16 20 C 0.12 1.85 10.99 84.71 0.93 2.78 16 21 C -0.07 -1.23 6.34 22.41 0.14 -1.08 16 22 Cl -0.03 -0.56 27.48 -2.72 -0.07 -0.64 16 23 C -0.13 -4.70 5.17 30.59 0.16 -4.54 16 24 C -0.10 -4.51 4.98 30.60 0.15 -4.36 16 25 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 26 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 27 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.08 2.32 7.80 -2.39 -0.02 2.30 16 32 H 0.34 8.76 8.46 -89.69 -0.76 8.00 16 33 H 0.09 2.11 6.94 -2.39 -0.02 2.09 16 34 H 0.05 1.24 6.31 -2.39 -0.02 1.22 16 35 H 0.19 2.11 8.06 -2.91 -0.02 2.08 16 36 H 0.20 1.97 8.06 -2.91 -0.02 1.94 16 37 H 0.05 1.74 8.13 -2.39 -0.02 1.72 16 38 H 0.05 1.74 7.45 -2.38 -0.02 1.72 16 39 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.05 2.93 6.07 -2.39 -0.01 2.91 16 Total: -1.00 -60.20 350.17 1.16 -59.05 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: 0.30 Total: 13.03 kcal Atomic # 6 Polarization: -37.24 SS G_CDS: 3.85 Total: -33.39 kcal Atomic # 7 Polarization: -78.30 SS G_CDS: -4.87 Total: -83.17 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 17 Polarization: -1.34 SS G_CDS: -0.15 Total: -1.49 kcal Total: -60.20 1.16 -59.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329774.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.990 kcal (2) G-P(sol) polarization free energy of solvation -60.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds