Wall clock time and date at job start Tue Mar 31 2020 15:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99831 * 2 1 4 4 H 1.48499 * 109.46980 * 274.99289 * 3 2 1 5 5 H 1.48500 * 109.46612 * 34.99280 * 3 2 1 6 6 H 1.48496 * 109.46627 * 154.99261 * 3 2 1 7 7 C 1.37872 * 119.99939 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99655 * 189.57209 * 7 2 1 9 9 C 1.50697 * 120.00494 * 9.56990 * 7 2 1 10 10 C 1.52999 * 109.47377 * 185.44991 * 9 7 2 11 11 C 1.52998 * 109.47093 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47252 * 59.99889 * 11 10 9 13 13 N 1.46903 * 109.47299 * 59.99952 * 12 11 10 14 14 C 1.46899 * 111.00155 * 155.00074 * 13 12 11 15 15 C 1.50694 * 109.47297 * 179.97438 * 14 13 12 16 16 N 1.31904 * 119.61987 * 270.02634 * 15 14 13 17 17 C 1.31870 * 121.77080 * 180.02562 * 16 15 14 18 18 C 1.38184 * 120.80476 * 0.02562 * 17 16 15 19 19 C 1.38749 * 119.15838 * 359.93895 * 18 17 16 20 20 Cl 1.73595 * 120.80919 * 180.02562 * 19 18 17 21 21 C 1.38244 * 119.62071 * 89.99793 * 15 14 13 22 22 Cl 1.73600 * 120.43594 * 359.72771 * 21 15 14 23 23 C 1.52999 * 109.47162 * 300.00069 * 12 11 10 24 24 C 1.52999 * 109.46976 * 65.44426 * 9 7 2 25 25 H 0.96995 * 120.00477 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.46948 * 305.44686 * 9 7 2 27 27 H 1.08996 * 109.47478 * 59.99793 * 10 9 7 28 28 H 1.08998 * 109.46833 * 299.99766 * 10 9 7 29 29 H 1.09000 * 109.47495 * 299.99926 * 11 10 9 30 30 H 1.09000 * 109.47304 * 179.97438 * 11 10 9 31 31 H 1.08996 * 109.47532 * 179.97438 * 12 11 10 32 32 H 1.00898 * 110.99890 * 31.04461 * 13 12 11 33 33 H 1.09003 * 109.46927 * 60.00209 * 14 13 12 34 34 H 1.09001 * 109.47008 * 300.00282 * 14 13 12 35 35 H 1.08001 * 119.60008 * 179.97438 * 17 16 15 36 36 H 1.08002 * 120.42102 * 179.97438 * 18 17 16 37 37 H 1.08996 * 109.47478 * 180.02562 * 23 12 11 38 38 H 1.09005 * 109.47235 * 300.00186 * 23 12 11 39 39 H 1.08993 * 109.47697 * 300.00255 * 24 9 7 40 40 H 1.09005 * 109.46951 * 60.00755 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3911 2.1074 -1.3948 5 1 1.5032 2.6199 0.8029 6 1 3.5954 1.4120 0.5919 7 6 2.0045 -1.1940 -0.0005 8 1 3.0732 -1.2005 0.1550 9 6 1.2669 -2.4900 -0.2181 10 6 2.2324 -3.6630 -0.0376 11 6 1.4836 -4.9787 -0.2591 12 6 0.9078 -5.0055 -1.6763 13 7 2.0011 -4.8942 -2.6512 14 6 1.6201 -5.4880 -3.9397 15 6 2.7636 -5.3548 -4.9120 16 7 2.8470 -4.2838 -5.6775 17 6 3.8290 -4.1238 -6.5430 18 6 4.8147 -5.0825 -6.6802 19 6 4.7625 -6.2233 -5.8921 20 17 5.9786 -7.4545 -6.0286 21 6 3.7134 -6.3561 -4.9911 22 17 3.5997 -7.7584 -3.9742 23 6 -0.0577 -3.8325 -1.8569 24 6 0.6906 -2.5171 -1.6351 25 1 -0.4850 0.8400 -0.0004 26 1 0.4559 -2.5723 0.5056 27 1 2.6430 -3.6437 0.9719 28 1 3.0434 -3.5807 -0.7612 29 1 0.6723 -5.0613 0.4642 30 1 2.1715 -5.8144 -0.1309 31 1 0.3747 -5.9429 -1.8343 32 1 2.8468 -5.3141 -2.2956 33 1 0.7459 -4.9699 -4.3342 34 1 1.3840 -6.5427 -3.7980 35 1 3.8628 -3.2330 -7.1528 36 1 5.6158 -4.9452 -7.3913 37 1 -0.4683 -3.8518 -2.8664 38 1 -0.8690 -3.9150 -1.1335 39 1 0.0027 -1.6815 -1.7637 40 1 1.5016 -2.4348 -2.3588 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173334734.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:16 Heat of formation + Delta-G solvation = 7.580260 kcal Electronic energy + Delta-G solvation = -23462.167012 eV Core-core repulsion = 19941.678644 eV Total energy + Delta-G solvation = -3520.488368 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.69536 -38.29886 -37.20293 -36.96204 -34.78378 -32.76996 -32.24311 -31.10702 -29.68148 -28.70195 -25.81817 -24.21973 -23.98769 -22.27937 -21.40729 -20.49476 -18.15297 -17.62568 -17.43145 -16.36965 -16.17881 -15.28488 -15.04314 -14.84370 -14.40797 -14.30529 -14.03251 -13.65052 -13.00796 -12.71827 -12.59404 -12.52809 -12.26159 -12.15494 -11.97141 -11.48417 -11.44473 -11.37228 -11.17069 -11.05541 -10.72592 -10.58509 -10.16822 -10.03824 -9.84893 -9.78414 -9.70915 -9.28534 -9.17418 -8.68272 -8.50776 -8.13414 -7.98189 -5.86684 -3.86041 0.47991 0.58478 1.34355 1.75638 3.20678 3.39521 3.46337 3.49520 3.88363 4.15339 4.36670 4.56075 4.59820 4.71655 5.02888 5.05869 5.32451 5.39932 5.44694 5.47806 5.60737 5.73206 5.80227 6.04072 6.20089 6.36162 6.43913 6.53924 6.57790 6.84588 6.90773 7.08254 7.30872 7.36105 7.57026 7.60070 7.64815 7.72734 7.93617 8.23630 8.26354 8.65899 9.18176 9.75885 11.22442 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.015854 B = 0.003347 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.732778 B = 8363.773567 C = 9153.599574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.063 3.937 3 Si 0.881 3.119 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.508 4.508 8 H 0.051 0.949 9 C 0.051 3.949 10 C -0.102 4.102 11 C -0.119 4.119 12 C 0.097 3.903 13 N -0.658 5.658 14 C 0.102 3.898 15 C 0.173 3.827 16 N -0.441 5.441 17 C 0.123 3.877 18 C -0.161 4.161 19 C 0.012 3.988 20 Cl -0.036 7.036 21 C -0.087 4.087 22 Cl -0.034 7.034 23 C -0.105 4.105 24 C -0.091 4.091 25 H 0.257 0.743 26 H 0.025 0.975 27 H 0.040 0.960 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.042 0.958 31 H 0.030 0.970 32 H 0.336 0.664 33 H 0.099 0.901 34 H 0.050 0.950 35 H 0.174 0.826 36 H 0.153 0.847 37 H 0.040 0.960 38 H 0.052 0.948 39 H 0.061 0.939 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.540 -16.221 -14.055 22.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.138 4.138 3 Si 0.710 3.290 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.201 1.201 7 C -0.546 4.546 8 H 0.069 0.931 9 C 0.032 3.968 10 C -0.139 4.139 11 C -0.156 4.156 12 C -0.012 4.012 13 N -0.291 5.291 14 C -0.028 4.028 15 C 0.033 3.967 16 N -0.150 5.150 17 C -0.034 4.034 18 C -0.182 4.182 19 C -0.024 4.024 20 Cl -0.007 7.007 21 C -0.118 4.118 22 Cl -0.005 7.005 23 C -0.144 4.144 24 C -0.129 4.129 25 H 0.067 0.933 26 H 0.043 0.957 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.061 0.939 31 H 0.047 0.953 32 H 0.155 0.845 33 H 0.117 0.883 34 H 0.068 0.932 35 H 0.191 0.809 36 H 0.171 0.829 37 H 0.059 0.941 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.661 -15.055 -14.067 21.654 hybrid contribution 1.396 -0.836 0.067 1.628 sum 8.057 -15.891 -13.999 22.659 Atomic orbital electron populations 1.69974 1.05828 1.26076 1.51005 1.24924 0.94684 0.98739 0.95407 0.86754 0.80085 0.84325 0.77869 1.20833 1.21535 1.20076 1.21206 0.93900 0.91314 1.48185 0.93085 1.18612 0.93677 0.91266 0.93218 1.21533 0.99115 0.93961 0.99328 1.21756 0.99789 0.98967 0.95130 1.21529 0.91573 0.96938 0.91116 1.60455 1.06465 1.60253 1.01896 1.20953 0.94347 0.98371 0.89127 1.21283 0.94052 0.87011 0.94336 1.67763 1.23360 1.19866 1.03996 1.23046 0.88390 0.98009 0.93992 1.22167 1.02085 0.93016 1.00965 1.21195 0.91392 0.92657 0.97150 1.98412 1.52886 1.52397 1.97000 1.21894 0.98178 0.93636 0.98094 1.98394 1.97557 1.38371 1.66219 1.21593 0.96737 0.96833 0.99194 1.21346 0.98883 0.93369 0.99277 0.93340 0.95722 0.94136 0.92729 0.91862 0.93926 0.95257 0.84543 0.88304 0.93182 0.80904 0.82906 0.94104 0.92955 0.92014 0.92938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.15 12.16 55.43 0.67 -25.48 16 2 C 0.06 1.80 5.20 -17.82 -0.09 1.71 16 3 Si 0.88 21.87 29.55 -169.99 -5.02 16.85 16 4 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.51 -14.27 8.48 -34.44 -0.29 -14.57 16 8 H 0.05 1.44 7.77 -52.49 -0.41 1.03 16 9 C 0.05 1.27 1.97 -91.77 -0.18 1.09 16 10 C -0.10 -2.12 4.99 -26.73 -0.13 -2.25 16 11 C -0.12 -2.01 5.30 -26.73 -0.14 -2.15 16 12 C 0.10 1.58 2.82 -67.71 -0.19 1.38 16 13 N -0.66 -10.18 4.81 -107.99 -0.52 -10.70 16 14 C 0.10 1.35 5.37 -4.98 -0.03 1.33 16 15 C 0.17 2.24 6.30 -82.56 -0.52 1.72 16 16 N -0.44 -5.90 10.27 -9.46 -0.10 -6.00 16 17 C 0.12 1.23 11.18 -17.55 -0.20 1.03 16 18 C -0.16 -1.41 9.93 -39.41 -0.39 -1.80 16 19 C 0.01 0.12 6.37 -39.14 -0.25 -0.13 16 20 Cl -0.04 -0.33 28.14 -51.86 -1.46 -1.79 16 21 C -0.09 -1.02 6.34 -39.33 -0.25 -1.26 16 22 Cl -0.03 -0.37 26.45 -51.86 -1.37 -1.74 16 23 C -0.11 -2.01 5.53 -26.76 -0.15 -2.15 16 24 C -0.09 -2.13 4.88 -26.76 -0.13 -2.26 16 25 H 0.26 7.22 8.31 -40.82 -0.34 6.89 16 26 H 0.02 0.68 8.09 -51.93 -0.42 0.26 16 27 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.05 1.15 7.48 -51.93 -0.39 0.76 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.04 0.63 8.12 -51.93 -0.42 0.21 16 31 H 0.03 0.43 7.80 -51.93 -0.40 0.02 16 32 H 0.34 5.01 8.18 -39.29 -0.32 4.69 16 33 H 0.10 1.39 7.44 -51.93 -0.39 1.01 16 34 H 0.05 0.59 6.81 -51.93 -0.35 0.24 16 35 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16 36 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 37 H 0.04 0.73 7.45 -51.93 -0.39 0.34 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.06 1.65 6.91 -51.93 -0.36 1.29 16 40 H 0.05 1.28 7.60 -51.93 -0.39 0.89 16 LS Contribution 349.87 15.07 5.27 5.27 Total: -1.00 -30.10 349.87 -10.96 -41.06 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -5.49 Total: 0.86 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: -2.94 Total: -18.33 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: 0.06 Total: -42.18 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -2.83 Total: -3.54 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.10 -10.96 -41.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173334734.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.641 kcal (2) G-P(sol) polarization free energy of solvation -30.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds