Wall clock time and date at job start Tue Mar 31 2020 15:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99831 * 2 1 4 4 H 1.48499 * 109.46980 * 274.99289 * 3 2 1 5 5 H 1.48500 * 109.46612 * 34.99280 * 3 2 1 6 6 H 1.48496 * 109.46627 * 154.99261 * 3 2 1 7 7 C 1.37872 * 119.99939 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99655 * 189.57209 * 7 2 1 9 9 C 1.50697 * 120.00494 * 9.56990 * 7 2 1 10 10 C 1.52999 * 109.47377 * 185.44991 * 9 7 2 11 11 C 1.52998 * 109.47093 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47252 * 59.99889 * 11 10 9 13 13 N 1.46903 * 109.47299 * 59.99952 * 12 11 10 14 14 C 1.46899 * 111.00155 * 155.00074 * 13 12 11 15 15 C 1.50694 * 109.47297 * 179.97438 * 14 13 12 16 16 N 1.31904 * 119.61987 * 270.02634 * 15 14 13 17 17 C 1.31870 * 121.77080 * 180.02562 * 16 15 14 18 18 C 1.38184 * 120.80476 * 0.02562 * 17 16 15 19 19 C 1.38749 * 119.15838 * 359.93895 * 18 17 16 20 20 Cl 1.73595 * 120.80919 * 180.02562 * 19 18 17 21 21 C 1.38244 * 119.62071 * 89.99793 * 15 14 13 22 22 Cl 1.73600 * 120.43594 * 359.72771 * 21 15 14 23 23 C 1.52999 * 109.47162 * 300.00069 * 12 11 10 24 24 C 1.52999 * 109.46976 * 65.44426 * 9 7 2 25 25 H 0.96995 * 120.00477 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.46948 * 305.44686 * 9 7 2 27 27 H 1.08996 * 109.47478 * 59.99793 * 10 9 7 28 28 H 1.08998 * 109.46833 * 299.99766 * 10 9 7 29 29 H 1.09000 * 109.47495 * 299.99926 * 11 10 9 30 30 H 1.09000 * 109.47304 * 179.97438 * 11 10 9 31 31 H 1.08996 * 109.47532 * 179.97438 * 12 11 10 32 32 H 1.00898 * 110.99890 * 31.04461 * 13 12 11 33 33 H 1.09003 * 109.46927 * 60.00209 * 14 13 12 34 34 H 1.09001 * 109.47008 * 300.00282 * 14 13 12 35 35 H 1.08001 * 119.60008 * 179.97438 * 17 16 15 36 36 H 1.08002 * 120.42102 * 179.97438 * 18 17 16 37 37 H 1.08996 * 109.47478 * 180.02562 * 23 12 11 38 38 H 1.09005 * 109.47235 * 300.00186 * 23 12 11 39 39 H 1.08993 * 109.47697 * 300.00255 * 24 9 7 40 40 H 1.09005 * 109.46951 * 60.00755 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3911 2.1074 -1.3948 5 1 1.5032 2.6199 0.8029 6 1 3.5954 1.4120 0.5919 7 6 2.0045 -1.1940 -0.0005 8 1 3.0732 -1.2005 0.1550 9 6 1.2669 -2.4900 -0.2181 10 6 2.2324 -3.6630 -0.0376 11 6 1.4836 -4.9787 -0.2591 12 6 0.9078 -5.0055 -1.6763 13 7 2.0011 -4.8942 -2.6512 14 6 1.6201 -5.4880 -3.9397 15 6 2.7636 -5.3548 -4.9120 16 7 2.8470 -4.2838 -5.6775 17 6 3.8290 -4.1238 -6.5430 18 6 4.8147 -5.0825 -6.6802 19 6 4.7625 -6.2233 -5.8921 20 17 5.9786 -7.4545 -6.0286 21 6 3.7134 -6.3561 -4.9911 22 17 3.5997 -7.7584 -3.9742 23 6 -0.0577 -3.8325 -1.8569 24 6 0.6906 -2.5171 -1.6351 25 1 -0.4850 0.8400 -0.0004 26 1 0.4559 -2.5723 0.5056 27 1 2.6430 -3.6437 0.9719 28 1 3.0434 -3.5807 -0.7612 29 1 0.6723 -5.0613 0.4642 30 1 2.1715 -5.8144 -0.1309 31 1 0.3747 -5.9429 -1.8343 32 1 2.8468 -5.3141 -2.2956 33 1 0.7459 -4.9699 -4.3342 34 1 1.3840 -6.5427 -3.7980 35 1 3.8628 -3.2330 -7.1528 36 1 5.6158 -4.9452 -7.3913 37 1 -0.4683 -3.8518 -2.8664 38 1 -0.8690 -3.9150 -1.1335 39 1 0.0027 -1.6815 -1.7637 40 1 1.5016 -2.4348 -2.3588 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173334734.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:16 Heat of formation + Delta-G solvation = -9.310825 kcal Electronic energy + Delta-G solvation = -23462.899465 eV Core-core repulsion = 19941.678644 eV Total energy + Delta-G solvation = -3521.220820 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.52480 -39.77494 -37.96787 -37.78082 -36.22018 -34.41045 -33.19121 -32.37434 -31.33340 -30.22350 -27.09320 -26.01845 -24.78228 -23.39550 -22.86176 -22.22405 -19.75272 -18.42349 -18.32689 -18.29146 -17.21138 -16.61236 -16.30846 -16.17472 -15.98103 -15.16137 -15.08125 -14.86412 -14.50960 -14.20864 -13.88678 -13.65533 -13.49403 -13.29323 -13.17972 -13.06458 -12.87754 -12.72821 -12.53199 -12.44251 -12.24511 -12.10683 -11.87257 -11.81442 -11.58210 -11.13015 -10.69500 -10.56943 -10.52368 -10.40026 -10.27863 -10.06929 -9.18702 -8.05417 -6.11924 -0.31627 -0.20795 0.56649 0.95486 1.40236 1.42161 1.51548 2.38154 2.47475 3.03278 3.24455 3.37051 3.47477 3.61898 3.98920 4.02782 4.10723 4.25109 4.31446 4.33803 4.53510 4.63982 4.71428 4.76947 4.83488 4.95193 4.96359 5.02435 5.14221 5.24031 5.29300 5.38780 5.51650 5.66201 5.72338 5.83916 6.13949 6.18504 6.25789 6.50543 6.54232 6.77700 7.02110 7.53383 9.02736 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.015854 B = 0.003347 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.732778 B = 8363.773567 C = 9153.599574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.014 3.986 3 Si 0.943 3.057 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.529 4.529 8 H 0.045 0.955 9 C 0.049 3.951 10 C -0.093 4.093 11 C -0.112 4.112 12 C 0.106 3.894 13 N -0.673 5.673 14 C 0.107 3.893 15 C 0.155 3.845 16 N -0.477 5.477 17 C 0.118 3.882 18 C -0.146 4.146 19 C 0.002 3.998 20 Cl -0.027 7.027 21 C -0.093 4.093 22 Cl -0.031 7.031 23 C -0.100 4.100 24 C -0.075 4.075 25 H 0.258 0.742 26 H -0.010 1.010 27 H 0.034 0.966 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.341 0.659 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.201 0.799 36 H 0.187 0.813 37 H 0.051 0.949 38 H 0.047 0.953 39 H 0.020 0.980 40 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.069 -17.437 -15.264 24.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.184 4.184 3 Si 0.769 3.231 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.568 4.568 8 H 0.063 0.937 9 C 0.030 3.970 10 C -0.130 4.130 11 C -0.150 4.150 12 C -0.003 4.003 13 N -0.306 5.306 14 C -0.023 4.023 15 C 0.016 3.984 16 N -0.187 5.187 17 C -0.040 4.040 18 C -0.166 4.166 19 C -0.033 4.033 20 Cl 0.002 6.998 21 C -0.123 4.123 22 Cl -0.003 7.003 23 C -0.138 4.138 24 C -0.113 4.113 25 H 0.067 0.933 26 H 0.008 0.992 27 H 0.053 0.947 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.160 0.840 33 H 0.105 0.895 34 H 0.085 0.915 35 H 0.218 0.782 36 H 0.204 0.796 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.038 0.962 40 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 8.202 -16.287 -15.274 23.787 hybrid contribution 0.971 -0.439 0.397 1.137 sum 9.173 -16.726 -14.877 24.191 Atomic orbital electron populations 1.70096 1.07167 1.26817 1.51755 1.25670 0.95496 1.02072 0.95176 0.85777 0.79041 0.80290 0.77974 1.20392 1.20991 1.19348 1.21615 0.93857 0.93130 1.48157 0.93700 1.18579 0.93333 0.92091 0.92979 1.21354 0.98312 0.94512 0.98862 1.21692 1.00019 0.97558 0.95698 1.21370 0.91421 0.96602 0.90911 1.60315 1.06385 1.61389 1.02542 1.20888 0.94317 0.98888 0.88162 1.21150 0.94594 0.87731 0.94957 1.67712 1.25153 1.20584 1.05261 1.23556 0.87775 0.99189 0.93448 1.22524 1.02090 0.91648 1.00347 1.21385 0.91362 0.93407 0.97163 1.98416 1.52322 1.52108 1.96936 1.21890 0.98383 0.93524 0.98545 1.98389 1.97572 1.38080 1.66222 1.21488 0.96923 0.95689 0.99666 1.21052 0.97759 0.94553 0.97936 0.93350 0.99190 0.94722 0.93032 0.91853 0.90697 0.92196 0.83999 0.89541 0.91527 0.78230 0.79615 0.93025 0.93445 0.96166 0.94223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.65 12.16 21.45 0.26 -55.39 16 2 C 0.01 0.81 5.20 84.65 0.44 1.25 16 3 Si 0.94 45.54 29.55 68.60 2.03 47.57 16 4 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 5 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 6 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 7 C -0.53 -30.55 8.48 25.60 0.22 -30.33 16 8 H 0.04 2.57 7.77 -2.91 -0.02 2.55 16 9 C 0.05 2.51 1.97 -11.54 -0.02 2.48 16 10 C -0.09 -3.86 4.99 30.59 0.15 -3.70 16 11 C -0.11 -3.60 5.30 30.59 0.16 -3.44 16 12 C 0.11 3.25 2.82 44.91 0.13 3.38 16 13 N -0.67 -19.94 4.81 -495.58 -2.38 -22.33 16 14 C 0.11 2.72 5.37 85.56 0.46 3.17 16 15 C 0.15 3.84 6.30 42.55 0.27 4.11 16 16 N -0.48 -12.33 10.27 -183.86 -1.89 -14.22 16 17 C 0.12 2.11 11.18 84.67 0.95 3.06 16 18 C -0.15 -2.15 9.93 22.38 0.22 -1.93 16 19 C 0.00 0.04 6.37 22.56 0.14 0.19 16 20 Cl -0.03 -0.44 28.14 -2.72 -0.08 -0.52 16 21 C -0.09 -2.01 6.34 22.44 0.14 -1.86 16 22 Cl -0.03 -0.63 26.45 -2.72 -0.07 -0.70 16 23 C -0.10 -3.78 5.53 30.58 0.17 -3.61 16 24 C -0.07 -3.63 4.88 30.58 0.15 -3.48 16 25 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 26 H -0.01 -0.58 8.09 -2.39 -0.02 -0.60 16 27 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.05 2.16 7.48 -2.39 -0.02 2.14 16 29 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.07 1.97 8.12 -2.39 -0.02 1.96 16 31 H 0.06 1.54 7.80 -2.39 -0.02 1.52 16 32 H 0.34 9.56 8.18 -89.70 -0.73 8.83 16 33 H 0.09 2.39 7.44 -2.39 -0.02 2.37 16 34 H 0.07 1.45 6.81 -2.39 -0.02 1.43 16 35 H 0.20 2.25 8.06 -2.91 -0.02 2.23 16 36 H 0.19 1.42 8.06 -2.91 -0.02 1.40 16 37 H 0.05 1.83 7.45 -2.39 -0.02 1.81 16 38 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 39 H 0.02 1.11 6.91 -2.39 -0.02 1.09 16 40 H 0.04 1.98 7.60 -2.38 -0.02 1.97 16 Total: -1.00 -67.07 349.87 1.77 -65.30 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: 0.33 Total: 11.01 kcal Atomic # 6 Polarization: -34.29 SS G_CDS: 3.58 Total: -30.72 kcal Atomic # 7 Polarization: -87.93 SS G_CDS: -4.01 Total: -91.94 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -0.15 Total: -1.22 kcal Total: -67.07 1.77 -65.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173334734.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.986 kcal (2) G-P(sol) polarization free energy of solvation -67.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds