Wall clock time and date at job start Tue Mar 31 2020 14:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29479 * 1 3 3 Si 1.86802 * 119.99882 * 2 1 4 4 H 1.48496 * 109.47015 * 85.01159 * 3 2 1 5 5 H 1.48504 * 109.47169 * 205.01365 * 3 2 1 6 6 H 1.48500 * 109.47012 * 325.00984 * 3 2 1 7 7 C 1.46621 * 120.00213 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00379 * 186.50933 * 7 2 1 9 9 C 1.39432 * 120.00162 * 6.50692 * 7 2 1 10 10 C 1.41673 * 120.66396 * 34.30614 * 9 7 2 11 11 C 1.35837 * 119.85298 * 180.02562 * 10 9 7 12 12 C 1.39270 * 121.33945 * 359.97438 * 11 10 9 13 13 C 1.37689 * 121.41495 * 0.02685 * 12 11 10 14 14 C 1.39256 * 120.01135 * 359.65867 * 13 12 11 15 15 N 1.37588 * 120.64311 * 180.32541 * 14 13 12 16 16 C 1.39022 * 120.00029 * 265.16812 * 15 14 13 17 17 C 1.39287 * 119.93335 * 8.47807 * 16 15 14 18 18 C 1.37584 * 120.07057 * 179.97438 * 17 16 15 19 19 C 1.39858 * 119.92757 * 359.97438 * 18 17 16 20 20 C 1.47453 * 120.06639 * 180.02562 * 19 18 17 21 21 O 1.21500 * 119.99747 * 131.68747 * 20 19 18 22 22 O 1.34756 * 119.99779 * 311.69062 * 20 19 18 23 23 C 1.39807 * 119.86756 * 0.02562 * 19 18 17 24 24 N 1.48020 * 120.03711 * 180.02562 * 23 19 18 25 25 O 1.31698 * 120.00228 * 142.31468 * 24 23 19 26 26 O 1.31699 * 119.99645 * 322.31831 * 24 23 19 27 27 C 1.37627 * 119.93410 * 359.73530 * 23 19 18 28 28 H 0.96993 * 120.00384 * 359.97438 * 1 2 3 29 29 H 1.08002 * 120.07931 * 359.97438 * 10 9 7 30 30 H 1.07994 * 119.32967 * 179.97438 * 11 10 9 31 31 H 1.08005 * 119.29592 * 179.97438 * 12 11 10 32 32 H 1.08003 * 119.99505 * 179.97438 * 13 12 11 33 33 H 0.97002 * 120.00000 * 85.16365 * 15 14 13 34 34 H 1.08000 * 119.96539 * 359.97438 * 17 16 15 35 35 H 1.07999 * 120.03505 * 179.97438 * 18 17 16 36 36 H 0.96703 * 116.99609 * 179.97438 * 22 20 19 37 37 H 1.07991 * 119.97223 * 180.25834 * 27 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2948 0.0000 0.0000 3 14 2.2288 1.6178 0.0000 4 1 2.3708 2.1073 1.3947 5 1 3.5751 1.4121 -0.5920 6 1 1.4829 2.6199 -0.8029 7 6 2.0279 -1.2697 -0.0006 8 1 3.1027 -1.2728 0.1055 9 6 1.3376 -2.4734 -0.1379 10 6 0.1783 -2.5529 -0.9483 11 6 -0.4819 -3.7339 -1.0701 12 6 -0.0430 -4.8802 -0.4121 13 6 1.0768 -4.8637 0.3888 14 6 1.8012 -3.6852 0.5491 15 7 2.9260 -3.6556 1.3410 16 6 2.8307 -3.2560 2.6691 17 6 1.5792 -3.0563 3.2468 18 6 1.4816 -2.6612 4.5611 19 6 2.6409 -2.4608 5.3173 20 6 2.5399 -2.0380 6.7263 21 8 3.1799 -2.6169 7.5816 22 8 1.7377 -1.0096 7.0653 23 6 3.8957 -2.6621 4.7346 24 7 5.1251 -2.4515 5.5317 25 8 6.1597 -3.2502 5.3699 26 8 5.1843 -1.4655 6.4027 27 6 3.9867 -3.0620 3.4209 28 1 -0.4850 0.8400 0.0004 29 1 -0.1804 -1.6765 -1.4676 30 1 -1.3649 -3.7848 -1.6897 31 1 -0.5934 -5.8017 -0.5319 32 1 1.3964 -5.7661 0.8887 33 1 3.7854 -3.9137 0.9726 34 1 0.6843 -3.2116 2.6624 35 1 0.5109 -2.5061 5.0083 36 1 1.7041 -0.7692 8.0013 37 1 4.9556 -3.2217 2.9714 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001174507299.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:33 Heat of formation + Delta-G solvation = -11.425759 kcal Electronic energy + Delta-G solvation = -27173.770109 eV Core-core repulsion = 23078.348168 eV Total energy + Delta-G solvation = -4095.421940 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 2.35 seconds Orbital eigenvalues (eV) -40.73131 -39.43709 -38.57961 -37.42422 -36.04162 -35.00576 -34.22867 -33.93169 -31.70203 -30.61802 -30.07803 -28.14639 -26.71649 -25.16080 -23.85115 -22.70239 -21.53574 -21.13984 -20.29877 -18.47978 -18.19327 -18.03665 -17.70703 -17.14702 -16.88318 -16.00655 -15.80265 -15.45071 -15.39805 -14.54434 -14.50690 -14.22310 -14.04588 -13.70667 -13.01234 -12.92359 -12.79220 -12.53326 -12.01270 -11.76656 -11.58038 -11.55203 -11.47208 -11.24901 -11.08640 -10.93526 -10.83725 -10.69156 -10.60493 -10.49068 -10.00784 -9.74561 -9.63074 -9.43200 -7.81195 -7.67863 -7.44894 -7.14677 -4.73312 -0.43496 0.94403 1.18875 1.22266 2.30097 2.36873 2.64498 2.83167 2.85240 2.95613 2.97647 3.54996 3.58565 3.81321 4.21358 4.47975 4.95589 4.97512 5.03032 5.07923 5.18071 5.42160 5.70024 5.87431 5.90030 6.10017 6.11627 6.19357 6.36460 6.43101 6.49886 6.52489 6.79215 6.85737 6.90157 7.12207 7.41120 7.59080 7.73473 7.79705 7.82810 7.83914 8.05128 8.26899 8.36307 8.70066 9.63895 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.011475 B = 0.004454 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.414075 B = 6285.202325 C = 7137.517705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.754 5.754 2 C 0.077 3.923 3 Si 0.913 3.087 4 H -0.263 1.263 5 H -0.256 1.256 6 H -0.270 1.270 7 C -0.449 4.449 8 H 0.082 0.918 9 C 0.130 3.870 10 C -0.166 4.166 11 C -0.086 4.086 12 C -0.256 4.256 13 C -0.063 4.063 14 C -0.065 4.065 15 N -0.621 5.621 16 C 0.279 3.721 17 C -0.135 4.135 18 C -0.017 4.017 19 C -0.151 4.151 20 C 0.538 3.462 21 O -0.505 6.505 22 O -0.503 6.503 23 C 0.098 3.902 24 N -0.022 5.022 25 O -0.160 6.160 26 O -0.154 6.154 27 C -0.161 4.161 28 H 0.292 0.708 29 H 0.115 0.885 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.397 0.603 34 H 0.156 0.844 35 H 0.150 0.850 36 H 0.413 0.587 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.504 -1.066 3.770 3.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.374 5.374 2 C -0.150 4.150 3 Si 0.736 3.264 4 H -0.188 1.188 5 H -0.179 1.179 6 H -0.195 1.195 7 C -0.476 4.476 8 H 0.100 0.900 9 C 0.126 3.874 10 C -0.185 4.185 11 C -0.104 4.104 12 C -0.276 4.276 13 C -0.082 4.082 14 C -0.158 4.158 15 N -0.235 5.235 16 C 0.166 3.834 17 C -0.157 4.157 18 C -0.038 4.038 19 C -0.157 4.157 20 C 0.381 3.619 21 O -0.393 6.393 22 O -0.315 6.315 23 C 0.014 3.986 24 N 0.465 4.535 25 O -0.358 6.358 26 O -0.354 6.354 27 C -0.185 4.185 28 H 0.105 0.895 29 H 0.132 0.868 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.233 0.767 34 H 0.173 0.827 35 H 0.168 0.832 36 H 0.272 0.728 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -1.266 -1.301 3.034 3.536 hybrid contribution 0.944 0.952 0.668 1.498 sum -0.322 -0.350 3.702 3.733 Atomic orbital electron populations 1.69055 1.08621 1.30913 1.28851 1.27449 0.94603 1.01837 0.91096 0.86192 0.80921 0.79455 0.79871 1.18787 1.17922 1.19508 1.20455 0.94857 0.88982 1.43319 0.89992 1.18724 0.90943 0.90595 0.87161 1.20993 0.99092 0.96571 1.01853 1.20399 0.97969 0.93613 0.98446 1.20091 1.01392 0.97564 1.08514 1.20663 0.94683 0.95338 0.97528 1.18269 0.96249 0.95590 1.05707 1.40902 1.10154 1.66784 1.05668 1.17957 0.91811 0.88059 0.85538 1.21159 0.97942 1.02233 0.94412 1.20975 0.96463 0.93624 0.92696 1.18234 0.91880 1.12648 0.92898 1.20444 0.75596 0.77102 0.88750 1.90938 1.42831 1.54235 1.51272 1.84629 1.62925 1.48680 1.35238 1.19621 0.80650 1.07042 0.91335 1.50392 1.03169 1.00021 0.99903 1.96248 1.25764 1.40534 1.73231 1.96265 1.90503 1.19978 1.28635 1.20130 0.99939 1.06939 0.91537 0.89528 0.86750 0.89468 0.89373 0.89148 0.76657 0.82652 0.83246 0.72838 0.83195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -16.39 11.18 55.99 0.63 -15.77 16 2 C 0.08 1.64 5.47 -15.16 -0.08 1.56 16 3 Si 0.91 16.54 29.65 -169.99 -5.04 11.50 16 4 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 5 H -0.26 -4.67 7.11 56.52 0.40 -4.27 16 6 H -0.27 -4.75 7.11 56.52 0.40 -4.35 16 7 C -0.45 -9.96 8.92 -35.76 -0.32 -10.28 16 8 H 0.08 1.80 7.90 -52.49 -0.41 1.38 16 9 C 0.13 2.84 5.69 -104.67 -0.60 2.24 16 10 C -0.17 -3.63 8.65 -39.13 -0.34 -3.97 16 11 C -0.09 -1.71 9.91 -40.06 -0.40 -2.11 16 12 C -0.26 -4.86 9.98 -39.40 -0.39 -5.25 16 13 C -0.06 -1.16 9.94 -39.40 -0.39 -1.55 16 14 C -0.06 -1.24 4.51 -81.43 -0.37 -1.61 16 15 N -0.62 -10.22 4.83 -6.79 -0.03 -10.25 16 16 C 0.28 4.51 6.61 -83.83 -0.55 3.95 16 17 C -0.13 -2.17 9.28 -39.43 -0.37 -2.54 16 18 C -0.02 -0.25 9.73 -39.21 -0.38 -0.64 16 19 C -0.15 -2.46 5.77 -104.95 -0.61 -3.06 16 20 C 0.54 8.59 6.50 34.48 0.22 8.81 16 21 O -0.50 -9.35 16.18 -26.09 -0.42 -9.78 16 22 O -0.50 -6.24 13.39 -40.64 -0.54 -6.79 16 23 C 0.10 1.69 6.54 -79.58 -0.52 1.17 16 24 N -0.02 -0.41 4.49 34.14 0.15 -0.26 16 25 O -0.16 -3.00 19.69 -31.57 -0.62 -3.62 16 26 O -0.15 -3.05 17.26 -38.63 -0.67 -3.72 16 27 C -0.16 -2.51 9.52 -39.43 -0.38 -2.89 16 28 H 0.29 5.75 8.27 -40.82 -0.34 5.41 16 29 H 0.11 2.61 6.59 -52.49 -0.35 2.27 16 30 H 0.09 1.57 8.06 -52.49 -0.42 1.14 16 31 H 0.09 1.51 8.06 -52.48 -0.42 1.08 16 32 H 0.09 1.51 8.06 -52.48 -0.42 1.09 16 33 H 0.40 5.64 8.83 -40.82 -0.36 5.28 16 34 H 0.16 2.69 6.98 -52.49 -0.37 2.32 16 35 H 0.15 1.77 8.06 -52.49 -0.42 1.35 16 36 H 0.41 3.05 9.11 45.56 0.42 3.46 16 37 H 0.15 2.06 8.02 -52.49 -0.42 1.64 16 LS Contribution 342.94 15.07 5.17 5.17 Total: -1.00 -27.15 342.94 -9.16 -36.31 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -2.32 Total: 13.35 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: -5.46 Total: -16.14 kcal Atomic # 7 Polarization: -27.02 SS G_CDS: 0.75 Total: -26.28 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -2.25 Total: -23.91 kcal Atomic # 14 Polarization: 16.54 SS G_CDS: -5.04 Total: 11.50 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -27.15 -9.16 -36.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174507299.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.882 kcal (2) G-P(sol) polarization free energy of solvation -27.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.35 seconds