Wall clock time and date at job start Tue Mar 31 2020 14:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29479 * 1 3 3 Si 1.86802 * 119.99882 * 2 1 4 4 H 1.48496 * 109.47015 * 85.01159 * 3 2 1 5 5 H 1.48504 * 109.47169 * 205.01365 * 3 2 1 6 6 H 1.48500 * 109.47012 * 325.00984 * 3 2 1 7 7 C 1.46621 * 120.00213 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00379 * 186.50933 * 7 2 1 9 9 C 1.39432 * 120.00162 * 6.50692 * 7 2 1 10 10 C 1.41673 * 120.66396 * 34.30614 * 9 7 2 11 11 C 1.35837 * 119.85298 * 180.02562 * 10 9 7 12 12 C 1.39270 * 121.33945 * 359.97438 * 11 10 9 13 13 C 1.37689 * 121.41495 * 0.02685 * 12 11 10 14 14 C 1.39256 * 120.01135 * 359.65867 * 13 12 11 15 15 N 1.37588 * 120.64311 * 180.32541 * 14 13 12 16 16 C 1.39022 * 120.00029 * 265.16812 * 15 14 13 17 17 C 1.39287 * 119.93335 * 8.47807 * 16 15 14 18 18 C 1.37584 * 120.07057 * 179.97438 * 17 16 15 19 19 C 1.39858 * 119.92757 * 359.97438 * 18 17 16 20 20 C 1.47453 * 120.06639 * 180.02562 * 19 18 17 21 21 O 1.21500 * 119.99747 * 131.68747 * 20 19 18 22 22 O 1.34756 * 119.99779 * 311.69062 * 20 19 18 23 23 C 1.39807 * 119.86756 * 0.02562 * 19 18 17 24 24 N 1.48020 * 120.03711 * 180.02562 * 23 19 18 25 25 O 1.31698 * 120.00228 * 142.31468 * 24 23 19 26 26 O 1.31699 * 119.99645 * 322.31831 * 24 23 19 27 27 C 1.37627 * 119.93410 * 359.73530 * 23 19 18 28 28 H 0.96993 * 120.00384 * 359.97438 * 1 2 3 29 29 H 1.08002 * 120.07931 * 359.97438 * 10 9 7 30 30 H 1.07994 * 119.32967 * 179.97438 * 11 10 9 31 31 H 1.08005 * 119.29592 * 179.97438 * 12 11 10 32 32 H 1.08003 * 119.99505 * 179.97438 * 13 12 11 33 33 H 0.97002 * 120.00000 * 85.16365 * 15 14 13 34 34 H 1.08000 * 119.96539 * 359.97438 * 17 16 15 35 35 H 1.07999 * 120.03505 * 179.97438 * 18 17 16 36 36 H 0.96703 * 116.99609 * 179.97438 * 22 20 19 37 37 H 1.07991 * 119.97223 * 180.25834 * 27 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2948 0.0000 0.0000 3 14 2.2288 1.6178 0.0000 4 1 2.3708 2.1073 1.3947 5 1 3.5751 1.4121 -0.5920 6 1 1.4829 2.6199 -0.8029 7 6 2.0279 -1.2697 -0.0006 8 1 3.1027 -1.2728 0.1055 9 6 1.3376 -2.4734 -0.1379 10 6 0.1783 -2.5529 -0.9483 11 6 -0.4819 -3.7339 -1.0701 12 6 -0.0430 -4.8802 -0.4121 13 6 1.0768 -4.8637 0.3888 14 6 1.8012 -3.6852 0.5491 15 7 2.9260 -3.6556 1.3410 16 6 2.8307 -3.2560 2.6691 17 6 1.5792 -3.0563 3.2468 18 6 1.4816 -2.6612 4.5611 19 6 2.6409 -2.4608 5.3173 20 6 2.5399 -2.0380 6.7263 21 8 3.1799 -2.6169 7.5816 22 8 1.7377 -1.0096 7.0653 23 6 3.8957 -2.6621 4.7346 24 7 5.1251 -2.4515 5.5317 25 8 6.1597 -3.2502 5.3699 26 8 5.1843 -1.4655 6.4027 27 6 3.9867 -3.0620 3.4209 28 1 -0.4850 0.8400 0.0004 29 1 -0.1804 -1.6765 -1.4676 30 1 -1.3649 -3.7848 -1.6897 31 1 -0.5934 -5.8017 -0.5319 32 1 1.3964 -5.7661 0.8887 33 1 3.7854 -3.9137 0.9726 34 1 0.6843 -3.2116 2.6624 35 1 0.5109 -2.5061 5.0083 36 1 1.7041 -0.7692 8.0013 37 1 4.9556 -3.2217 2.9714 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001174507299.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:32 Heat of formation + Delta-G solvation = -24.512652 kcal Electronic energy + Delta-G solvation = -27174.337599 eV Core-core repulsion = 23078.348168 eV Total energy + Delta-G solvation = -4095.989430 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.00203 -40.70691 -40.01178 -38.88063 -37.20230 -36.39593 -35.69195 -35.49516 -32.99607 -31.99852 -31.63627 -29.58811 -28.11787 -26.70827 -25.13768 -23.99797 -22.85515 -22.70299 -21.73631 -19.79721 -19.50283 -19.39118 -19.27065 -18.37547 -18.26900 -17.38426 -17.23087 -16.91901 -16.69112 -15.99257 -15.70979 -15.66780 -15.43317 -14.88315 -14.46362 -14.31998 -14.25468 -13.79753 -13.51864 -13.12659 -13.06293 -12.96522 -12.79212 -12.68318 -12.56565 -12.34819 -12.24124 -12.13259 -11.98371 -11.92195 -11.56941 -11.22709 -11.17148 -10.68445 -9.36971 -9.22590 -8.89329 -8.60118 -6.35411 -1.87215 -0.35248 -0.16644 -0.07448 0.82732 1.07109 1.11367 1.35148 1.43380 1.49159 1.81902 2.09879 2.28862 2.50640 2.64249 3.26212 3.57479 3.68261 3.71338 3.76401 3.91055 4.18525 4.44378 4.48210 4.57630 4.60254 4.81650 4.89695 4.95328 4.97634 5.16320 5.27617 5.34347 5.39037 5.39855 5.58348 5.86337 6.03753 6.20203 6.25576 6.37151 6.60778 6.69616 6.79801 6.83429 7.15905 8.10316 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.011475 B = 0.004454 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.414075 B = 6285.202325 C = 7137.517705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.047 3.953 3 Si 0.966 3.034 4 H -0.267 1.267 5 H -0.259 1.259 6 H -0.261 1.261 7 C -0.478 4.478 8 H 0.076 0.924 9 C 0.107 3.893 10 C -0.191 4.191 11 C -0.091 4.091 12 C -0.254 4.254 13 C -0.066 4.066 14 C -0.049 4.049 15 N -0.622 5.622 16 C 0.274 3.726 17 C -0.140 4.140 18 C -0.002 4.002 19 C -0.158 4.158 20 C 0.543 3.457 21 O -0.535 6.535 22 O -0.493 6.493 23 C 0.081 3.919 24 N -0.020 5.020 25 O -0.154 6.154 26 O -0.185 6.185 27 C -0.147 4.147 28 H 0.298 0.702 29 H 0.095 0.905 30 H 0.103 0.897 31 H 0.112 0.888 32 H 0.114 0.886 33 H 0.409 0.591 34 H 0.145 0.855 35 H 0.179 0.821 36 H 0.436 0.564 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.783 -1.670 4.122 4.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.177 4.177 3 Si 0.788 3.212 4 H -0.192 1.192 5 H -0.183 1.183 6 H -0.186 1.186 7 C -0.505 4.505 8 H 0.094 0.906 9 C 0.103 3.897 10 C -0.211 4.211 11 C -0.109 4.109 12 C -0.274 4.274 13 C -0.085 4.085 14 C -0.143 4.143 15 N -0.238 5.238 16 C 0.162 3.838 17 C -0.163 4.163 18 C -0.022 4.022 19 C -0.164 4.164 20 C 0.387 3.613 21 O -0.426 6.426 22 O -0.306 6.306 23 C -0.004 4.004 24 N 0.464 4.536 25 O -0.356 6.356 26 O -0.378 6.378 27 C -0.171 4.171 28 H 0.111 0.889 29 H 0.113 0.887 30 H 0.121 0.879 31 H 0.130 0.870 32 H 0.132 0.868 33 H 0.247 0.753 34 H 0.163 0.837 35 H 0.197 0.803 36 H 0.298 0.702 37 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -1.569 -1.848 3.432 4.202 hybrid contribution 0.964 0.999 0.562 1.498 sum -0.605 -0.850 3.994 4.128 Atomic orbital electron populations 1.69081 1.09479 1.31816 1.29848 1.28005 0.95151 1.03852 0.90670 0.85401 0.79709 0.76663 0.79457 1.19196 1.18292 1.18554 1.20523 0.94669 0.89903 1.45368 0.90607 1.18999 0.91353 0.91641 0.87666 1.20945 1.00300 0.96794 1.03022 1.20628 0.98334 0.93365 0.98597 1.20420 1.01414 0.97989 1.07533 1.20940 0.94337 0.95912 0.97310 1.18300 0.96382 0.94919 1.04709 1.40795 1.10031 1.67341 1.05621 1.17951 0.92063 0.88402 0.85373 1.21173 0.97529 1.02642 0.94979 1.21216 0.97196 0.91925 0.91874 1.18478 0.91960 1.12514 0.93429 1.20380 0.75364 0.77258 0.88308 1.90928 1.44218 1.55479 1.52001 1.84577 1.61531 1.47077 1.37448 1.19861 0.80339 1.08399 0.91836 1.50587 1.03530 0.99657 0.99804 1.96226 1.26313 1.40208 1.72898 1.96262 1.90836 1.20764 1.29942 1.20232 1.00579 1.05468 0.90868 0.88925 0.88674 0.87871 0.86998 0.86791 0.75305 0.83727 0.80349 0.70194 0.81439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -34.41 11.18 23.23 0.26 -34.15 16 2 C 0.05 2.03 5.47 87.23 0.48 2.51 16 3 Si 0.97 33.90 29.65 68.60 2.03 35.93 16 4 H -0.27 -9.44 7.11 99.48 0.71 -8.73 16 5 H -0.26 -9.12 7.11 99.48 0.71 -8.41 16 6 H -0.26 -8.68 7.11 99.48 0.71 -7.97 16 7 C -0.48 -21.36 8.92 24.75 0.22 -21.14 16 8 H 0.08 3.36 7.90 -2.91 -0.02 3.34 16 9 C 0.11 4.69 5.69 -19.90 -0.11 4.58 16 10 C -0.19 -8.44 8.65 22.56 0.20 -8.25 16 11 C -0.09 -3.55 9.91 21.96 0.22 -3.33 16 12 C -0.25 -9.06 9.98 22.39 0.22 -8.83 16 13 C -0.07 -2.28 9.94 22.38 0.22 -2.05 16 14 C -0.05 -1.82 4.51 40.73 0.18 -1.64 16 15 N -0.62 -19.51 4.83 -175.40 -0.85 -20.36 16 16 C 0.27 8.41 6.61 38.50 0.25 8.67 16 17 C -0.14 -4.29 9.28 22.37 0.21 -4.08 16 18 C 0.00 -0.06 9.73 22.51 0.22 0.16 16 19 C -0.16 -4.89 5.77 -20.08 -0.12 -5.01 16 20 C 0.54 16.51 6.50 70.25 0.46 16.96 16 21 O -0.54 -19.37 16.18 26.37 0.43 -18.95 16 22 O -0.49 -11.11 13.39 -56.66 -0.76 -11.86 16 23 C 0.08 2.67 6.54 36.61 0.24 2.90 16 24 N -0.02 -0.75 4.49 -45.90 -0.21 -0.95 16 25 O -0.15 -5.63 19.69 3.52 0.07 -5.56 16 26 O -0.18 -7.28 17.26 10.27 0.18 -7.11 16 27 C -0.15 -4.35 9.52 22.37 0.21 -4.14 16 28 H 0.30 11.86 8.27 -92.71 -0.77 11.09 16 29 H 0.10 4.49 6.59 -2.91 -0.02 4.47 16 30 H 0.10 3.59 8.06 -2.91 -0.02 3.57 16 31 H 0.11 3.44 8.06 -2.91 -0.02 3.42 16 32 H 0.11 3.42 8.06 -2.91 -0.02 3.40 16 33 H 0.41 10.92 8.83 -92.71 -0.82 10.10 16 34 H 0.15 4.82 6.98 -2.91 -0.02 4.80 16 35 H 0.18 3.71 8.06 -2.91 -0.02 3.68 16 36 H 0.44 5.39 9.11 -74.06 -0.67 4.71 16 37 H 0.17 4.27 8.02 -2.91 -0.02 4.25 16 Total: -1.00 -57.93 342.94 3.94 -53.99 By element: Atomic # 1 Polarization: 32.03 SS G_CDS: -0.32 Total: 31.72 kcal Atomic # 6 Polarization: -25.80 SS G_CDS: 3.10 Total: -22.70 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: -0.79 Total: -55.46 kcal Atomic # 8 Polarization: -43.39 SS G_CDS: -0.09 Total: -43.48 kcal Atomic # 14 Polarization: 33.90 SS G_CDS: 2.03 Total: 35.93 kcal Total: -57.93 3.94 -53.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174507299.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.481 kcal (2) G-P(sol) polarization free energy of solvation -57.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds