Wall clock time and date at job start Tue Mar 31 2020 14:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29518 * 1 3 3 Si 1.86802 * 120.00176 * 2 1 4 4 H 1.48498 * 109.47423 * 270.00426 * 3 2 1 5 5 H 1.48506 * 109.46933 * 30.00108 * 3 2 1 6 6 H 1.48503 * 109.47330 * 149.99961 * 3 2 1 7 7 C 1.46550 * 120.00266 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00115 * 192.45334 * 7 2 1 9 9 C 1.39488 * 119.99621 * 12.45615 * 7 2 1 10 10 C 1.41746 * 120.18274 * 25.87588 * 9 7 2 11 11 C 1.35783 * 119.81064 * 180.02562 * 10 9 7 12 12 C 1.40218 * 120.18569 * 359.97438 * 11 10 9 13 13 N 1.37586 * 119.81445 * 179.97438 * 12 11 10 14 14 C 1.39567 * 119.99825 * 28.03566 * 13 12 11 15 15 C 1.38752 * 120.01288 * 31.59296 * 14 13 12 16 16 C 1.39476 * 119.76145 * 180.30056 * 15 14 13 17 17 C 1.47746 * 120.11005 * 179.70456 * 16 15 14 18 18 O 1.21464 * 120.00234 * 359.72555 * 17 16 15 19 19 O 1.34716 * 119.99917 * 179.72437 * 17 16 15 20 20 C 1.39688 * 119.77931 * 359.42962 * 16 15 14 21 21 C 1.37996 * 120.01196 * 0.29275 * 20 16 15 22 22 N 1.48016 * 119.87846 * 179.97438 * 21 20 16 23 23 O 1.31694 * 120.00217 * 0.02562 * 22 21 20 24 24 O 1.31699 * 119.99756 * 179.97438 * 22 21 20 25 25 C 1.38228 * 120.24143 * 0.02562 * 21 20 16 26 26 C 1.40213 * 120.36553 * 0.27718 * 12 11 10 27 27 C 1.35783 * 120.18724 * 359.43931 * 26 12 11 28 28 H 0.97006 * 119.99708 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.09705 * 359.97438 * 10 9 7 30 30 H 1.07994 * 119.90992 * 179.97438 * 11 10 9 31 31 H 0.96998 * 119.99911 * 208.02267 * 13 12 11 32 32 H 1.08002 * 120.12327 * 0.02720 * 15 14 13 33 33 H 0.96692 * 117.00171 * 179.97438 * 19 17 16 34 34 H 1.08001 * 119.99524 * 180.27829 * 20 16 15 35 35 H 1.07995 * 119.88674 * 179.97438 * 25 21 20 36 36 H 1.08000 * 119.89910 * 179.70430 * 26 12 11 37 37 H 1.08002 * 120.09317 * 180.29799 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2952 0.0000 0.0000 3 14 2.2292 1.6177 0.0000 4 1 2.4767 2.0465 -1.4000 5 1 1.4267 2.6527 0.7001 6 1 3.5268 1.4402 0.7000 7 6 2.0280 -1.2691 -0.0006 8 1 3.0889 -1.2802 0.2011 9 6 1.3552 -2.4628 -0.2617 10 6 0.1678 -2.4569 -1.0358 11 6 -0.4814 -3.6232 -1.2849 12 6 0.0200 -4.8311 -0.7792 13 7 -0.6443 -6.0084 -1.0359 14 6 -1.4087 -6.1396 -2.1962 15 6 -1.0376 -5.4668 -3.3515 16 6 -1.8088 -5.5968 -4.5064 17 6 -1.4245 -4.8787 -5.7390 18 8 -0.4382 -4.1697 -5.7465 19 8 -2.1679 -5.0102 -6.8548 20 6 -2.9426 -6.4127 -4.4953 21 6 -3.2999 -7.0822 -3.3428 22 7 -4.5022 -7.9456 -3.3342 23 8 -5.2284 -8.0741 -4.4252 24 8 -4.8451 -8.5860 -2.2356 25 6 -2.5398 -6.9487 -2.1960 26 6 1.1910 -4.8450 -0.0081 27 6 1.8553 -3.6883 0.2454 28 1 -0.4850 0.8401 0.0004 29 1 -0.2199 -1.5274 -1.4258 30 1 -1.3864 -3.6206 -1.8742 31 1 -0.5811 -6.7471 -0.4105 32 1 -0.1572 -4.8412 -3.3554 33 1 -1.8771 -4.5207 -7.6363 34 1 -3.5398 -6.5194 -5.3888 35 1 -2.8249 -7.4750 -1.2971 36 1 1.5678 -5.7791 0.3816 37 1 2.7598 -3.7014 0.8354 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176677410.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:38 Heat of formation + Delta-G solvation = -10.054543 kcal Electronic energy + Delta-G solvation = -26303.964273 eV Core-core repulsion = 22208.601793 eV Total energy + Delta-G solvation = -4095.362480 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 2.27 seconds Orbital eigenvalues (eV) -40.95247 -39.81707 -38.85274 -37.60865 -36.29178 -35.46667 -34.46960 -33.51131 -32.11277 -30.64702 -29.82429 -28.59044 -26.77463 -25.22439 -24.68099 -22.35265 -21.77120 -20.99052 -20.54006 -18.66930 -18.39682 -17.92188 -17.73434 -16.95597 -16.57408 -16.39812 -16.10022 -15.76658 -15.68786 -15.47228 -14.92226 -14.22210 -13.64480 -13.60432 -13.19153 -12.86017 -12.51533 -12.34329 -12.28157 -12.02255 -11.80452 -11.72811 -11.44022 -11.39229 -11.33548 -11.24834 -10.91004 -10.86939 -10.73821 -10.33134 -10.10414 -9.78506 -9.59460 -9.46300 -8.55234 -7.83279 -7.17683 -6.86693 -4.40984 -0.75058 0.31698 1.01890 1.08012 2.18943 2.56088 2.66787 2.88406 2.90388 2.91436 2.99751 3.33674 3.53995 3.67019 4.28859 4.33080 4.60436 4.65750 4.75202 4.77403 5.16116 5.42643 5.46843 5.52999 5.81111 5.84862 5.93810 6.01677 6.14687 6.23563 6.60714 6.62764 6.69232 6.71791 6.94135 7.22238 7.35245 7.48098 7.64975 7.80665 7.87245 7.97871 8.12912 8.35820 8.56647 8.80740 9.76228 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.014397 B = 0.003161 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.422342 B = 8855.621718 C = 9874.049889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.757 5.757 2 C 0.071 3.929 3 Si 0.919 3.081 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.452 4.452 8 H 0.084 0.916 9 C 0.103 3.897 10 C -0.158 4.158 11 C -0.113 4.113 12 C -0.027 4.027 13 N -0.645 5.645 14 C 0.207 3.793 15 C -0.050 4.050 16 C -0.090 4.090 17 C 0.531 3.469 18 O -0.493 6.493 19 O -0.510 6.510 20 C -0.063 4.063 21 C 0.026 3.974 22 N -0.014 5.014 23 O -0.171 6.171 24 O -0.172 6.172 25 C -0.109 4.109 26 C -0.095 4.095 27 C -0.221 4.221 28 H 0.290 0.710 29 H 0.122 0.878 30 H 0.087 0.913 31 H 0.403 0.597 32 H 0.165 0.835 33 H 0.418 0.582 34 H 0.163 0.837 35 H 0.157 0.843 36 H 0.090 0.910 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.835 -6.784 -7.247 10.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.378 5.378 2 C -0.154 4.154 3 Si 0.742 3.258 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.180 1.180 7 C -0.479 4.479 8 H 0.102 0.898 9 C 0.100 3.900 10 C -0.178 4.178 11 C -0.133 4.133 12 C -0.120 4.120 13 N -0.262 5.262 14 C 0.100 3.900 15 C -0.072 4.072 16 C -0.092 4.092 17 C 0.373 3.627 18 O -0.381 6.381 19 O -0.322 6.322 20 C -0.085 4.085 21 C -0.060 4.060 22 N 0.466 4.534 23 O -0.365 6.365 24 O -0.366 6.366 25 C -0.133 4.133 26 C -0.115 4.115 27 C -0.241 4.241 28 H 0.103 0.897 29 H 0.139 0.861 30 H 0.105 0.895 31 H 0.239 0.761 32 H 0.183 0.817 33 H 0.277 0.723 34 H 0.180 0.820 35 H 0.174 0.826 36 H 0.109 0.891 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.285 -6.101 -6.836 9.443 hybrid contribution 0.019 0.517 -0.122 0.532 sum -2.266 -5.584 -6.958 9.205 Atomic orbital electron populations 1.69116 1.08781 1.30610 1.29279 1.27519 0.94575 1.02089 0.91251 0.86127 0.80660 0.79171 0.79801 1.18799 1.19946 1.18049 1.20651 0.96201 0.89661 1.41383 0.89795 1.17618 0.91730 0.92134 0.88523 1.21000 0.98745 0.96415 1.01611 1.20237 0.98601 0.91998 1.02454 1.17048 0.97917 0.83861 1.13198 1.41256 1.50039 1.15653 1.19291 1.17236 0.90451 0.94745 0.87542 1.21716 0.99053 0.97867 0.88586 1.18553 0.97239 1.01133 0.92323 1.20466 0.80262 0.78784 0.83143 1.90979 1.26087 1.36597 1.84402 1.84538 1.55984 1.69378 1.22316 1.20959 0.96310 0.93756 0.97489 1.19732 0.88624 1.00249 0.97439 1.50429 1.01808 0.99112 1.02081 1.96266 1.51269 1.70319 1.18683 1.96273 1.76475 1.46211 1.17688 1.20756 0.92399 1.02303 0.97881 1.19942 0.93572 0.97189 1.00819 1.20537 1.02902 0.92852 1.07799 0.89748 0.86054 0.89483 0.76126 0.81710 0.72303 0.81970 0.82577 0.89141 0.88589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.70 10.86 55.99 0.61 -17.09 16 2 C 0.07 1.62 5.40 -15.18 -0.08 1.54 16 3 Si 0.92 16.90 29.66 -169.99 -5.04 11.86 16 4 H -0.26 -4.82 7.11 56.52 0.40 -4.41 16 5 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 6 H -0.26 -4.68 7.11 56.52 0.40 -4.28 16 7 C -0.45 -10.98 9.27 -35.77 -0.33 -11.31 16 8 H 0.08 1.95 7.96 -52.49 -0.42 1.54 16 9 C 0.10 2.51 5.61 -106.75 -0.60 1.91 16 10 C -0.16 -3.78 8.68 -39.12 -0.34 -4.12 16 11 C -0.11 -2.39 7.81 -39.72 -0.31 -2.70 16 12 C -0.03 -0.51 5.99 -83.80 -0.50 -1.01 16 13 N -0.65 -9.71 5.37 -8.33 -0.04 -9.75 16 14 C 0.21 2.93 5.85 -83.84 -0.49 2.43 16 15 C -0.05 -0.73 7.35 -38.93 -0.29 -1.02 16 16 C -0.09 -1.17 5.87 -105.01 -0.62 -1.79 16 17 C 0.53 6.75 8.27 34.62 0.29 7.04 16 18 O -0.49 -7.88 17.13 -19.24 -0.33 -8.21 16 19 O -0.51 -4.59 12.68 -40.54 -0.51 -5.11 16 20 C -0.06 -0.77 9.14 -39.13 -0.36 -1.13 16 21 C 0.03 0.35 6.87 -80.04 -0.55 -0.20 16 22 N -0.01 -0.21 4.98 33.92 0.17 -0.05 16 23 O -0.17 -2.62 19.14 -31.56 -0.60 -3.22 16 24 O -0.17 -2.69 19.14 -31.57 -0.60 -3.29 16 25 C -0.11 -1.39 9.48 -39.28 -0.37 -1.76 16 26 C -0.09 -1.87 9.87 -39.72 -0.39 -2.26 16 27 C -0.22 -4.90 9.75 -39.12 -0.38 -5.28 16 28 H 0.29 6.08 8.27 -40.82 -0.34 5.75 16 29 H 0.12 3.03 6.08 -52.49 -0.32 2.72 16 30 H 0.09 1.75 6.47 -52.49 -0.34 1.41 16 31 H 0.40 5.00 8.88 -40.82 -0.36 4.64 16 32 H 0.17 2.78 6.24 -52.49 -0.33 2.45 16 33 H 0.42 1.83 9.11 45.56 0.42 2.25 16 34 H 0.16 1.78 7.11 -52.49 -0.37 1.41 16 35 H 0.16 1.79 7.56 -52.49 -0.40 1.39 16 36 H 0.09 1.53 8.06 -52.49 -0.42 1.10 16 37 H 0.10 2.00 8.06 -52.49 -0.42 1.58 16 LS Contribution 339.28 15.07 5.11 5.11 Total: -1.00 -27.73 339.28 -8.67 -36.40 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -2.10 Total: 13.02 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: -5.32 Total: -19.67 kcal Atomic # 7 Polarization: -27.62 SS G_CDS: 0.73 Total: -26.89 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: -2.05 Total: -19.83 kcal Atomic # 14 Polarization: 16.90 SS G_CDS: -5.04 Total: 11.86 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -27.73 -8.67 -36.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176677410.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.346 kcal (2) G-P(sol) polarization free energy of solvation -27.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.27 seconds