Wall clock time and date at job start Tue Mar 31 2020 14:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29518 * 1 3 3 Si 1.86802 * 120.00176 * 2 1 4 4 H 1.48498 * 109.47423 * 270.00426 * 3 2 1 5 5 H 1.48506 * 109.46933 * 30.00108 * 3 2 1 6 6 H 1.48503 * 109.47330 * 149.99961 * 3 2 1 7 7 C 1.46550 * 120.00266 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00115 * 192.45334 * 7 2 1 9 9 C 1.39488 * 119.99621 * 12.45615 * 7 2 1 10 10 C 1.41746 * 120.18274 * 25.87588 * 9 7 2 11 11 C 1.35783 * 119.81064 * 180.02562 * 10 9 7 12 12 C 1.40218 * 120.18569 * 359.97438 * 11 10 9 13 13 N 1.37586 * 119.81445 * 179.97438 * 12 11 10 14 14 C 1.39567 * 119.99825 * 28.03566 * 13 12 11 15 15 C 1.38752 * 120.01288 * 31.59296 * 14 13 12 16 16 C 1.39476 * 119.76145 * 180.30056 * 15 14 13 17 17 C 1.47746 * 120.11005 * 179.70456 * 16 15 14 18 18 O 1.21464 * 120.00234 * 359.72555 * 17 16 15 19 19 O 1.34716 * 119.99917 * 179.72437 * 17 16 15 20 20 C 1.39688 * 119.77931 * 359.42962 * 16 15 14 21 21 C 1.37996 * 120.01196 * 0.29275 * 20 16 15 22 22 N 1.48016 * 119.87846 * 179.97438 * 21 20 16 23 23 O 1.31694 * 120.00217 * 0.02562 * 22 21 20 24 24 O 1.31699 * 119.99756 * 179.97438 * 22 21 20 25 25 C 1.38228 * 120.24143 * 0.02562 * 21 20 16 26 26 C 1.40213 * 120.36553 * 0.27718 * 12 11 10 27 27 C 1.35783 * 120.18724 * 359.43931 * 26 12 11 28 28 H 0.97006 * 119.99708 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.09705 * 359.97438 * 10 9 7 30 30 H 1.07994 * 119.90992 * 179.97438 * 11 10 9 31 31 H 0.96998 * 119.99911 * 208.02267 * 13 12 11 32 32 H 1.08002 * 120.12327 * 0.02720 * 15 14 13 33 33 H 0.96692 * 117.00171 * 179.97438 * 19 17 16 34 34 H 1.08001 * 119.99524 * 180.27829 * 20 16 15 35 35 H 1.07995 * 119.88674 * 179.97438 * 25 21 20 36 36 H 1.08000 * 119.89910 * 179.70430 * 26 12 11 37 37 H 1.08002 * 120.09317 * 180.29799 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2952 0.0000 0.0000 3 14 2.2292 1.6177 0.0000 4 1 2.4767 2.0465 -1.4000 5 1 1.4267 2.6527 0.7001 6 1 3.5268 1.4402 0.7000 7 6 2.0280 -1.2691 -0.0006 8 1 3.0889 -1.2802 0.2011 9 6 1.3552 -2.4628 -0.2617 10 6 0.1678 -2.4569 -1.0358 11 6 -0.4814 -3.6232 -1.2849 12 6 0.0200 -4.8311 -0.7792 13 7 -0.6443 -6.0084 -1.0359 14 6 -1.4087 -6.1396 -2.1962 15 6 -1.0376 -5.4668 -3.3515 16 6 -1.8088 -5.5968 -4.5064 17 6 -1.4245 -4.8787 -5.7390 18 8 -0.4382 -4.1697 -5.7465 19 8 -2.1679 -5.0102 -6.8548 20 6 -2.9426 -6.4127 -4.4953 21 6 -3.2999 -7.0822 -3.3428 22 7 -4.5022 -7.9456 -3.3342 23 8 -5.2284 -8.0741 -4.4252 24 8 -4.8451 -8.5860 -2.2356 25 6 -2.5398 -6.9487 -2.1960 26 6 1.1910 -4.8450 -0.0081 27 6 1.8553 -3.6883 0.2454 28 1 -0.4850 0.8401 0.0004 29 1 -0.2199 -1.5274 -1.4258 30 1 -1.3864 -3.6206 -1.8742 31 1 -0.5811 -6.7471 -0.4105 32 1 -0.1572 -4.8412 -3.3554 33 1 -1.8771 -4.5207 -7.6363 34 1 -3.5398 -6.5194 -5.3888 35 1 -2.8249 -7.4750 -1.2971 36 1 1.5678 -5.7791 0.3816 37 1 2.7598 -3.7014 0.8354 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176677410.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:37 Heat of formation + Delta-G solvation = -25.131997 kcal Electronic energy + Delta-G solvation = -26304.618081 eV Core-core repulsion = 22208.601793 eV Total energy + Delta-G solvation = -4096.016287 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.07296 -40.90524 -40.16659 -39.01261 -37.23953 -36.87183 -35.66042 -35.10019 -33.25605 -32.04442 -31.49528 -30.06293 -27.95653 -26.45216 -26.11214 -23.65943 -23.19047 -22.31538 -21.99138 -19.82712 -19.53731 -19.43212 -18.94626 -18.28239 -17.75300 -17.51849 -17.23079 -17.04742 -16.91850 -16.79645 -16.14714 -15.79712 -15.10412 -14.66130 -14.59233 -14.31551 -13.94230 -13.74577 -13.54671 -13.38486 -13.31554 -13.02539 -12.83344 -12.70845 -12.58443 -12.46973 -12.36557 -11.98465 -11.93632 -11.75712 -11.71930 -11.31917 -11.11597 -10.85094 -9.97324 -9.52425 -8.81428 -8.39909 -6.15063 -1.93432 -0.76574 -0.13492 -0.08392 0.90063 1.15896 1.22623 1.37017 1.48888 1.53023 1.73085 2.15007 2.17651 2.33581 2.62758 3.27504 3.50474 3.53411 3.60008 3.64619 3.70442 4.16049 4.30027 4.33943 4.39235 4.44732 4.71445 4.75772 4.90245 4.95031 5.00949 5.15444 5.27792 5.42354 5.50411 5.59009 5.67979 5.86591 6.07802 6.19002 6.39135 6.65725 6.80577 6.81819 6.83715 7.10889 8.14347 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.014397 B = 0.003161 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.422342 B = 8855.621718 C = 9874.049889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.034 3.966 3 Si 0.988 3.012 4 H -0.261 1.261 5 H -0.264 1.264 6 H -0.255 1.255 7 C -0.500 4.500 8 H 0.079 0.921 9 C 0.071 3.929 10 C -0.183 4.183 11 C -0.120 4.120 12 C 0.007 3.993 13 N -0.647 5.647 14 C 0.201 3.799 15 C -0.056 4.056 16 C -0.091 4.091 17 C 0.540 3.460 18 O -0.532 6.532 19 O -0.494 6.494 20 C -0.034 4.034 21 C 0.017 3.983 22 N -0.012 5.012 23 O -0.173 6.173 24 O -0.187 6.187 25 C -0.081 4.081 26 C -0.100 4.100 27 C -0.233 4.233 28 H 0.297 0.703 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.420 0.580 32 H 0.141 0.859 33 H 0.440 0.560 34 H 0.183 0.817 35 H 0.176 0.824 36 H 0.126 0.874 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.908 -8.450 -8.161 12.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.188 4.188 3 Si 0.808 3.192 4 H -0.186 1.186 5 H -0.188 1.188 6 H -0.178 1.178 7 C -0.527 4.527 8 H 0.097 0.903 9 C 0.068 3.932 10 C -0.203 4.203 11 C -0.141 4.141 12 C -0.088 4.088 13 N -0.268 5.268 14 C 0.096 3.904 15 C -0.079 4.079 16 C -0.093 4.093 17 C 0.384 3.616 18 O -0.423 6.423 19 O -0.308 6.308 20 C -0.056 4.056 21 C -0.070 4.070 22 N 0.466 4.534 23 O -0.368 6.368 24 O -0.378 6.378 25 C -0.105 4.105 26 C -0.121 4.121 27 C -0.253 4.253 28 H 0.109 0.891 29 H 0.118 0.882 30 H 0.113 0.887 31 H 0.258 0.742 32 H 0.159 0.841 33 H 0.303 0.697 34 H 0.200 0.800 35 H 0.193 0.807 36 H 0.144 0.856 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.412 -7.833 -7.779 11.554 hybrid contribution 0.145 0.724 -0.068 0.742 sum -3.266 -7.109 -7.847 11.080 Atomic orbital electron populations 1.69156 1.10057 1.31719 1.30544 1.28291 0.95280 1.04814 0.90378 0.85111 0.79311 0.75014 0.79748 1.18589 1.18834 1.17824 1.20836 0.96321 0.91076 1.44499 0.90266 1.17924 0.92493 0.93268 0.89484 1.20907 0.99735 0.96654 1.02971 1.20323 0.98767 0.92140 1.02852 1.17034 0.96835 0.84646 1.10253 1.41012 1.50470 1.14884 1.20450 1.17175 0.90720 0.95447 0.87054 1.21623 0.98764 0.97758 0.89721 1.18546 0.97251 1.01323 0.92225 1.20345 0.79704 0.77829 0.83757 1.90984 1.27894 1.38331 1.85086 1.84484 1.54825 1.69266 1.22265 1.21142 0.95140 0.91554 0.97764 1.19812 0.88556 1.00650 0.97975 1.50534 1.01926 0.99016 1.01926 1.96268 1.51511 1.70366 1.18667 1.96282 1.76885 1.46879 1.17776 1.20873 0.90900 1.00397 0.98375 1.20256 0.93320 0.97830 1.00660 1.20754 1.03474 0.93158 1.07937 0.89094 0.88205 0.88732 0.74163 0.84082 0.69669 0.79999 0.80679 0.85609 0.88063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -38.95 10.86 23.22 0.25 -38.69 16 2 C 0.03 1.63 5.40 87.20 0.47 2.10 16 3 Si 0.99 35.78 29.66 68.60 2.03 37.81 16 4 H -0.26 -9.26 7.11 99.48 0.71 -8.55 16 5 H -0.26 -8.98 7.11 99.48 0.71 -8.27 16 6 H -0.25 -9.00 7.11 99.48 0.71 -8.29 16 7 C -0.50 -25.73 9.27 24.74 0.23 -25.50 16 8 H 0.08 3.93 7.96 -2.91 -0.02 3.91 16 9 C 0.07 3.64 5.61 -21.24 -0.12 3.52 16 10 C -0.18 -9.19 8.68 22.57 0.20 -8.99 16 11 C -0.12 -5.19 7.81 22.18 0.17 -5.02 16 12 C 0.01 0.27 5.99 39.20 0.23 0.51 16 13 N -0.65 -17.95 5.37 -180.26 -0.97 -18.92 16 14 C 0.20 5.19 5.85 38.23 0.22 5.41 16 15 C -0.06 -1.57 7.35 22.69 0.17 -1.40 16 16 C -0.09 -2.17 5.87 -20.12 -0.12 -2.29 16 17 C 0.54 12.78 8.27 70.34 0.58 13.36 16 18 O -0.53 -16.83 17.13 19.95 0.34 -16.48 16 19 O -0.49 -7.40 12.68 -56.26 -0.71 -8.11 16 20 C -0.03 -0.73 9.14 22.56 0.21 -0.52 16 21 C 0.02 0.39 6.87 36.32 0.25 0.64 16 22 N -0.01 -0.33 4.98 -46.61 -0.23 -0.56 16 23 O -0.17 -4.76 19.14 3.53 0.07 -4.70 16 24 O -0.19 -5.33 19.14 3.52 0.07 -5.26 16 25 C -0.08 -1.82 9.48 22.47 0.21 -1.60 16 26 C -0.10 -3.86 9.87 22.18 0.22 -3.64 16 27 C -0.23 -10.57 9.75 22.57 0.22 -10.35 16 28 H 0.30 13.00 8.27 -92.70 -0.77 12.24 16 29 H 0.10 5.35 6.08 -2.91 -0.02 5.33 16 30 H 0.09 3.83 6.47 -2.91 -0.02 3.81 16 31 H 0.42 9.05 8.88 -92.71 -0.82 8.23 16 32 H 0.14 4.79 6.24 -2.91 -0.02 4.77 16 33 H 0.44 2.53 9.11 -74.06 -0.67 1.86 16 34 H 0.18 3.22 7.11 -2.91 -0.02 3.20 16 35 H 0.18 3.32 7.56 -2.91 -0.02 3.30 16 36 H 0.13 3.91 8.06 -2.91 -0.02 3.88 16 37 H 0.10 4.34 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -62.65 339.28 3.69 -58.96 By element: Atomic # 1 Polarization: 30.04 SS G_CDS: -0.31 Total: 29.73 kcal Atomic # 6 Polarization: -36.92 SS G_CDS: 3.15 Total: -33.78 kcal Atomic # 7 Polarization: -57.23 SS G_CDS: -0.95 Total: -58.17 kcal Atomic # 8 Polarization: -34.32 SS G_CDS: -0.24 Total: -34.55 kcal Atomic # 14 Polarization: 35.78 SS G_CDS: 2.03 Total: 37.81 kcal Total: -62.65 3.69 -58.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176677410.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.830 kcal (2) G-P(sol) polarization free energy of solvation -62.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds