Wall clock time and date at job start Tue Mar 31 2020 14:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29488 * 1 3 3 Si 1.86804 * 120.00204 * 2 1 4 4 H 1.48502 * 109.46657 * 239.99827 * 3 2 1 5 5 H 1.48501 * 109.46979 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47468 * 119.99778 * 3 2 1 7 7 C 1.46613 * 119.99878 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00165 * 196.82362 * 7 2 1 9 9 C 1.39389 * 119.99989 * 16.82902 * 7 2 1 10 10 C 1.41694 * 120.66918 * 25.11012 * 9 7 2 11 11 C 1.35814 * 119.84830 * 179.97438 * 10 9 7 12 12 C 1.39302 * 121.35421 * 0.02651 * 11 10 9 13 13 C 1.37642 * 121.42146 * 359.97438 * 12 11 10 14 14 C 1.39301 * 120.00975 * 359.97438 * 13 12 11 15 15 N 1.37472 * 120.64542 * 180.02562 * 14 13 12 16 16 C 1.39562 * 119.99708 * 256.18667 * 15 14 13 17 17 C 1.38763 * 120.00750 * 183.67818 * 16 15 14 18 18 C 1.39477 * 119.76091 * 179.75332 * 17 16 15 19 19 C 1.47741 * 120.10836 * 180.30156 * 18 17 16 20 20 O 1.21465 * 120.00425 * 0.24233 * 19 18 17 21 21 O 1.34712 * 119.99840 * 180.24619 * 19 18 17 22 22 C 1.39690 * 119.78031 * 0.54072 * 18 17 16 23 23 C 1.38004 * 120.00939 * 359.70980 * 22 18 17 24 24 N 1.48015 * 119.87309 * 180.02562 * 23 22 18 25 25 O 1.31708 * 119.99818 * 179.97438 * 24 23 22 26 26 O 1.31700 * 120.00376 * 359.97438 * 24 23 22 27 27 C 1.38216 * 120.24430 * 0.02562 * 23 22 18 28 28 H 0.97005 * 119.99601 * 0.02562 * 1 2 3 29 29 H 1.08000 * 120.07406 * 0.25608 * 10 9 7 30 30 H 1.08001 * 119.31808 * 179.97438 * 11 10 9 31 31 H 1.08007 * 119.28910 * 179.97438 * 12 11 10 32 32 H 1.07999 * 119.99461 * 180.02562 * 13 12 11 33 33 H 0.96996 * 120.00210 * 76.19130 * 15 14 13 34 34 H 1.07999 * 120.11345 * 0.02562 * 17 16 15 35 35 H 0.96697 * 117.00203 * 179.97438 * 21 19 18 36 36 H 1.07989 * 119.99627 * 179.72938 * 22 18 17 37 37 H 1.08004 * 119.88850 * 179.97438 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2949 0.0000 0.0000 3 14 2.2290 1.6177 0.0000 4 1 3.0827 1.6962 -1.2125 5 1 1.2640 2.7465 -0.0006 6 1 3.0826 1.6965 1.2124 7 6 2.0279 -1.2697 0.0006 8 1 3.0732 -1.2897 0.2713 9 6 1.3757 -2.4512 -0.3484 10 6 0.2320 -2.4256 -1.1844 11 6 -0.3903 -3.5868 -1.5143 12 6 0.0717 -4.8149 -1.0466 13 6 1.1774 -4.9026 -0.2316 14 6 1.8607 -3.7476 0.1421 15 7 2.9669 -3.8200 0.9551 16 6 2.8671 -3.4684 2.3021 17 6 3.9989 -3.4680 3.1049 18 6 3.8942 -3.1108 4.4491 19 6 5.0953 -3.1013 5.3092 20 8 6.1772 -3.4006 4.8450 21 8 4.9908 -2.7607 6.6083 22 6 2.6489 -2.7669 4.9806 23 6 1.5284 -2.7755 4.1750 24 7 0.2106 -2.4101 4.7412 25 8 -0.8603 -2.4170 3.9745 26 8 0.1088 -2.0781 6.0116 27 6 1.6323 -3.1241 2.8415 28 1 -0.4850 0.8401 -0.0004 29 1 -0.1414 -1.4852 -1.5621 30 1 -1.2616 -3.5573 -2.1518 31 1 -0.4491 -5.7179 -1.3295 32 1 1.5158 -5.8669 0.1174 33 1 3.8167 -4.1153 0.5927 34 1 4.9582 -3.7390 2.6892 35 1 5.8041 -2.7694 7.1313 36 1 2.5631 -2.4941 6.0219 37 1 0.7516 -3.1293 2.2164 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176680755.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:44 Heat of formation + Delta-G solvation = -12.791820 kcal Electronic energy + Delta-G solvation = -27291.177344 eV Core-core repulsion = 23195.696167 eV Total energy + Delta-G solvation = -4095.481177 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.72068 -39.61340 -38.37669 -37.31970 -36.26371 -34.91894 -34.04463 -33.91256 -31.78662 -30.30608 -29.99147 -27.82851 -26.41739 -25.17303 -24.74309 -22.18081 -21.46029 -21.03592 -20.09314 -18.76608 -18.19450 -17.68171 -17.55339 -16.66103 -16.27653 -16.05426 -15.87533 -15.59401 -15.54386 -15.32797 -14.55321 -14.16408 -14.05993 -13.52031 -12.92460 -12.87633 -12.69030 -12.16739 -11.99794 -11.78111 -11.76396 -11.49441 -11.36305 -11.05842 -11.01135 -10.93416 -10.74477 -10.70934 -10.63614 -10.31733 -9.87589 -9.69697 -9.54205 -9.42677 -7.74927 -7.72370 -7.36782 -6.98690 -4.62671 -0.35781 0.60277 1.42495 1.49099 2.40713 2.50171 2.71795 2.80356 2.83840 2.84013 3.07345 3.59031 3.60804 3.89638 4.25514 4.61315 4.90346 4.92954 5.00481 5.13599 5.33884 5.39714 5.86270 5.88943 5.99623 6.01429 6.20178 6.23637 6.26591 6.45062 6.52785 6.56414 6.90906 7.02204 7.11736 7.23113 7.50141 7.67826 7.69610 7.84620 7.89050 7.97867 8.19491 8.34979 8.48540 8.82876 9.63787 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.009643 B = 0.004880 C = 0.004694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2902.827508 B = 5735.745176 C = 5963.277280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.735 5.735 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.257 1.257 5 H -0.272 1.272 6 H -0.260 1.260 7 C -0.441 4.441 8 H 0.083 0.917 9 C 0.124 3.876 10 C -0.175 4.175 11 C -0.083 4.083 12 C -0.264 4.264 13 C -0.060 4.060 14 C -0.074 4.074 15 N -0.631 5.631 16 C 0.234 3.766 17 C -0.102 4.102 18 C -0.085 4.085 19 C 0.538 3.462 20 O -0.510 6.510 21 O -0.508 6.508 22 C -0.079 4.079 23 C 0.029 3.971 24 N -0.017 5.017 25 O -0.150 6.150 26 O -0.186 6.186 27 C -0.065 4.065 28 H 0.295 0.705 29 H 0.115 0.885 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.397 0.603 34 H 0.149 0.851 35 H 0.415 0.585 36 H 0.158 0.842 37 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.973 -2.415 5.928 9.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.354 5.354 2 C -0.154 4.154 3 Si 0.734 3.266 4 H -0.181 1.181 5 H -0.197 1.197 6 H -0.184 1.184 7 C -0.467 4.467 8 H 0.101 0.899 9 C 0.119 3.881 10 C -0.194 4.194 11 C -0.102 4.102 12 C -0.283 4.283 13 C -0.079 4.079 14 C -0.168 4.168 15 N -0.248 5.248 16 C 0.125 3.875 17 C -0.126 4.126 18 C -0.088 4.088 19 C 0.382 3.618 20 O -0.399 6.399 21 O -0.319 6.319 22 C -0.102 4.102 23 C -0.057 4.057 24 N 0.464 4.536 25 O -0.349 6.349 26 O -0.377 6.377 27 C -0.089 4.089 28 H 0.108 0.892 29 H 0.133 0.867 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.234 0.766 34 H 0.167 0.833 35 H 0.274 0.726 36 H 0.176 0.824 37 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 7.104 -2.495 5.214 9.159 hybrid contribution 0.643 0.840 0.335 1.109 sum 7.747 -1.656 5.550 9.673 Atomic orbital electron populations 1.69105 1.08717 1.31271 1.26317 1.27536 0.94557 1.02076 0.91277 0.86288 0.80523 0.79079 0.80681 1.18102 1.19677 1.18430 1.20485 0.97397 0.89803 1.38973 0.89895 1.18693 0.90921 0.90531 0.87914 1.20954 0.99564 0.96951 1.01964 1.20348 0.97904 0.93233 0.98666 1.20021 1.02006 0.96191 1.10119 1.20588 0.94680 0.95348 0.97305 1.18128 0.97810 0.93324 1.07491 1.40784 1.11580 1.68894 1.03533 1.17564 0.90976 0.92650 0.86285 1.20973 0.98779 1.01116 0.91755 1.18329 0.90357 1.07166 0.92974 1.20563 0.88134 0.72699 0.80446 1.90895 1.28992 1.45234 1.74778 1.84582 1.43551 1.81399 1.22415 1.20823 0.89207 0.98940 1.01183 1.19824 0.80967 1.10659 0.94281 1.50432 1.04242 0.96562 1.02340 1.96339 1.24450 1.57561 1.56542 1.96222 1.94621 1.52663 0.94179 1.20949 1.00157 0.95773 0.92048 0.89240 0.86684 0.89620 0.89585 0.89408 0.76642 0.83290 0.72590 0.82419 0.81315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -16.88 11.10 55.99 0.62 -16.26 16 2 C 0.07 1.66 5.32 -15.16 -0.08 1.58 16 3 Si 0.91 16.94 29.67 -169.99 -5.04 11.89 16 4 H -0.26 -4.72 7.11 56.52 0.40 -4.31 16 5 H -0.27 -4.93 7.11 56.52 0.40 -4.52 16 6 H -0.26 -4.90 7.11 56.52 0.40 -4.49 16 7 C -0.44 -10.13 8.74 -35.78 -0.31 -10.44 16 8 H 0.08 1.86 7.78 -52.49 -0.41 1.45 16 9 C 0.12 2.85 5.30 -104.66 -0.55 2.30 16 10 C -0.17 -4.09 8.71 -39.13 -0.34 -4.43 16 11 C -0.08 -1.80 9.91 -40.05 -0.40 -2.20 16 12 C -0.26 -5.46 9.98 -39.40 -0.39 -5.85 16 13 C -0.06 -1.20 9.97 -39.40 -0.39 -1.59 16 14 C -0.07 -1.51 4.68 -81.46 -0.38 -1.89 16 15 N -0.63 -10.83 4.80 -6.83 -0.03 -10.86 16 16 C 0.23 3.92 6.30 -83.83 -0.53 3.39 16 17 C -0.10 -1.47 9.44 -38.93 -0.37 -1.83 16 18 C -0.09 -1.20 5.87 -105.01 -0.62 -1.81 16 19 C 0.54 6.76 8.27 34.61 0.29 7.05 16 20 O -0.51 -7.41 17.13 -19.24 -0.33 -7.74 16 21 O -0.51 -4.78 12.68 -40.52 -0.51 -5.30 16 22 C -0.08 -1.19 9.14 -39.13 -0.36 -1.54 16 23 C 0.03 0.52 6.87 -80.04 -0.55 -0.03 16 24 N -0.02 -0.33 4.98 33.92 0.17 -0.16 16 25 O -0.15 -3.26 19.14 -31.57 -0.60 -3.86 16 26 O -0.19 -3.56 19.14 -31.57 -0.60 -4.16 16 27 C -0.07 -1.23 8.73 -39.28 -0.34 -1.57 16 28 H 0.29 6.16 8.27 -40.82 -0.34 5.82 16 29 H 0.12 2.77 6.25 -52.49 -0.33 2.45 16 30 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 31 H 0.09 1.61 8.06 -52.48 -0.42 1.19 16 32 H 0.09 1.58 8.06 -52.49 -0.42 1.16 16 33 H 0.40 5.74 8.83 -40.82 -0.36 5.38 16 34 H 0.15 1.87 7.65 -52.49 -0.40 1.47 16 35 H 0.42 1.83 9.11 45.56 0.42 2.24 16 36 H 0.16 2.15 7.11 -52.49 -0.37 1.77 16 37 H 0.17 3.70 6.23 -52.48 -0.33 3.37 16 LS Contribution 342.60 15.07 5.16 5.16 Total: -1.00 -27.25 342.60 -8.69 -35.94 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -2.18 Total: 14.24 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: -5.33 Total: -18.88 kcal Atomic # 7 Polarization: -28.05 SS G_CDS: 0.76 Total: -27.29 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -2.05 Total: -21.07 kcal Atomic # 14 Polarization: 16.94 SS G_CDS: -5.04 Total: 11.89 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -27.25 -8.69 -35.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176680755.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.152 kcal (2) G-P(sol) polarization free energy of solvation -27.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds