Wall clock time and date at job start Tue Mar 31 2020 14:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29488 * 1 3 3 Si 1.86804 * 120.00204 * 2 1 4 4 H 1.48502 * 109.46657 * 239.99827 * 3 2 1 5 5 H 1.48501 * 109.46979 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47468 * 119.99778 * 3 2 1 7 7 C 1.46613 * 119.99878 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00165 * 196.82362 * 7 2 1 9 9 C 1.39389 * 119.99989 * 16.82902 * 7 2 1 10 10 C 1.41694 * 120.66918 * 25.11012 * 9 7 2 11 11 C 1.35814 * 119.84830 * 179.97438 * 10 9 7 12 12 C 1.39302 * 121.35421 * 0.02651 * 11 10 9 13 13 C 1.37642 * 121.42146 * 359.97438 * 12 11 10 14 14 C 1.39301 * 120.00975 * 359.97438 * 13 12 11 15 15 N 1.37472 * 120.64542 * 180.02562 * 14 13 12 16 16 C 1.39562 * 119.99708 * 256.18667 * 15 14 13 17 17 C 1.38763 * 120.00750 * 183.67818 * 16 15 14 18 18 C 1.39477 * 119.76091 * 179.75332 * 17 16 15 19 19 C 1.47741 * 120.10836 * 180.30156 * 18 17 16 20 20 O 1.21465 * 120.00425 * 0.24233 * 19 18 17 21 21 O 1.34712 * 119.99840 * 180.24619 * 19 18 17 22 22 C 1.39690 * 119.78031 * 0.54072 * 18 17 16 23 23 C 1.38004 * 120.00939 * 359.70980 * 22 18 17 24 24 N 1.48015 * 119.87309 * 180.02562 * 23 22 18 25 25 O 1.31708 * 119.99818 * 179.97438 * 24 23 22 26 26 O 1.31700 * 120.00376 * 359.97438 * 24 23 22 27 27 C 1.38216 * 120.24430 * 0.02562 * 23 22 18 28 28 H 0.97005 * 119.99601 * 0.02562 * 1 2 3 29 29 H 1.08000 * 120.07406 * 0.25608 * 10 9 7 30 30 H 1.08001 * 119.31808 * 179.97438 * 11 10 9 31 31 H 1.08007 * 119.28910 * 179.97438 * 12 11 10 32 32 H 1.07999 * 119.99461 * 180.02562 * 13 12 11 33 33 H 0.96996 * 120.00210 * 76.19130 * 15 14 13 34 34 H 1.07999 * 120.11345 * 0.02562 * 17 16 15 35 35 H 0.96697 * 117.00203 * 179.97438 * 21 19 18 36 36 H 1.07989 * 119.99627 * 179.72938 * 22 18 17 37 37 H 1.08004 * 119.88850 * 179.97438 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2949 0.0000 0.0000 3 14 2.2290 1.6177 0.0000 4 1 3.0827 1.6962 -1.2125 5 1 1.2640 2.7465 -0.0006 6 1 3.0826 1.6965 1.2124 7 6 2.0279 -1.2697 0.0006 8 1 3.0732 -1.2897 0.2713 9 6 1.3757 -2.4512 -0.3484 10 6 0.2320 -2.4256 -1.1844 11 6 -0.3903 -3.5868 -1.5143 12 6 0.0717 -4.8149 -1.0466 13 6 1.1774 -4.9026 -0.2316 14 6 1.8607 -3.7476 0.1421 15 7 2.9669 -3.8200 0.9551 16 6 2.8671 -3.4684 2.3021 17 6 3.9989 -3.4680 3.1049 18 6 3.8942 -3.1108 4.4491 19 6 5.0953 -3.1013 5.3092 20 8 6.1772 -3.4006 4.8450 21 8 4.9908 -2.7607 6.6083 22 6 2.6489 -2.7669 4.9806 23 6 1.5284 -2.7755 4.1750 24 7 0.2106 -2.4101 4.7412 25 8 -0.8603 -2.4170 3.9745 26 8 0.1088 -2.0781 6.0116 27 6 1.6323 -3.1241 2.8415 28 1 -0.4850 0.8401 -0.0004 29 1 -0.1414 -1.4852 -1.5621 30 1 -1.2616 -3.5573 -2.1518 31 1 -0.4491 -5.7179 -1.3295 32 1 1.5158 -5.8669 0.1174 33 1 3.8167 -4.1153 0.5927 34 1 4.9582 -3.7390 2.6892 35 1 5.8041 -2.7694 7.1313 36 1 2.5631 -2.4941 6.0219 37 1 0.7516 -3.1293 2.2164 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176680755.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:43 Heat of formation + Delta-G solvation = -27.266781 kcal Electronic energy + Delta-G solvation = -27291.805025 eV Core-core repulsion = 23195.696167 eV Total energy + Delta-G solvation = -4096.108858 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.89216 -40.80024 -39.91638 -38.83698 -37.15721 -36.37778 -35.62560 -35.56511 -33.10963 -31.76660 -31.66203 -29.39451 -27.88850 -26.73161 -26.00027 -23.55375 -22.86639 -22.66171 -21.51389 -20.04850 -19.48440 -19.33129 -18.84105 -18.06719 -17.59362 -17.32827 -17.20195 -17.10656 -16.73744 -16.70184 -16.07164 -15.67647 -15.59680 -14.49314 -14.48241 -14.32430 -14.25395 -13.52736 -13.39913 -13.24268 -13.12562 -12.92669 -12.66306 -12.62835 -12.54979 -12.35976 -12.23003 -12.16840 -11.92748 -11.90168 -11.54903 -11.25678 -11.17703 -10.73673 -9.45375 -9.34948 -8.95513 -8.48762 -6.34722 -1.87326 -0.60513 -0.02254 0.11913 0.84882 1.10833 1.29392 1.33773 1.39522 1.50690 1.80798 2.04863 2.34295 2.53789 2.60369 3.40547 3.55729 3.64069 3.69378 3.70887 3.85342 4.29349 4.41120 4.46004 4.56276 4.56385 4.79343 4.82547 4.88144 4.93259 5.08661 5.26298 5.31640 5.48172 5.54983 5.56802 5.83809 6.02552 6.14060 6.25903 6.40214 6.64770 6.67897 6.87888 6.90674 7.19684 8.01392 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.009643 B = 0.004880 C = 0.004694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2902.827508 B = 5735.745176 C = 5963.277280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.038 3.962 3 Si 0.973 3.027 4 H -0.251 1.251 5 H -0.266 1.266 6 H -0.259 1.259 7 C -0.464 4.464 8 H 0.084 0.916 9 C 0.099 3.901 10 C -0.206 4.206 11 C -0.092 4.092 12 C -0.270 4.270 13 C -0.067 4.067 14 C -0.057 4.057 15 N -0.631 5.631 16 C 0.227 3.773 17 C -0.071 4.071 18 C -0.081 4.081 19 C 0.551 3.449 20 O -0.527 6.527 21 O -0.497 6.497 22 C -0.056 4.056 23 C 0.016 3.984 24 N -0.013 5.013 25 O -0.239 6.239 26 O -0.137 6.137 27 C -0.089 4.089 28 H 0.300 0.700 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.108 0.892 32 H 0.113 0.887 33 H 0.413 0.587 34 H 0.176 0.824 35 H 0.440 0.560 36 H 0.181 0.819 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.144 -2.789 8.100 13.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.187 4.187 3 Si 0.793 3.207 4 H -0.175 1.175 5 H -0.190 1.190 6 H -0.183 1.183 7 C -0.490 4.490 8 H 0.102 0.898 9 C 0.095 3.905 10 C -0.225 4.225 11 C -0.111 4.111 12 C -0.290 4.290 13 C -0.087 4.087 14 C -0.152 4.152 15 N -0.252 5.252 16 C 0.119 3.881 17 C -0.095 4.095 18 C -0.084 4.084 19 C 0.395 3.605 20 O -0.418 6.418 21 O -0.312 6.312 22 C -0.078 4.078 23 C -0.071 4.071 24 N 0.464 4.536 25 O -0.416 6.416 26 O -0.346 6.346 27 C -0.113 4.113 28 H 0.112 0.888 29 H 0.115 0.885 30 H 0.118 0.882 31 H 0.126 0.874 32 H 0.131 0.869 33 H 0.252 0.748 34 H 0.194 0.806 35 H 0.304 0.696 36 H 0.198 0.802 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 10.183 -2.907 7.235 12.825 hybrid contribution -0.154 0.854 -0.039 0.869 sum 10.029 -2.053 7.196 12.513 Atomic orbital electron populations 1.69165 1.10105 1.32222 1.27548 1.28301 0.95114 1.04824 0.90507 0.85378 0.79296 0.75407 0.80631 1.17487 1.18984 1.18313 1.20606 0.97489 0.90589 1.40285 0.89833 1.19020 0.91251 0.91983 0.88234 1.20947 1.01059 0.96888 1.03650 1.20580 0.98294 0.93316 0.98884 1.20337 1.02299 0.96492 1.09861 1.20907 0.94412 0.96370 0.96979 1.18177 0.98046 0.92543 1.06437 1.40631 1.11347 1.69669 1.03505 1.17544 0.91000 0.93260 0.86246 1.21250 0.98660 0.97943 0.91600 1.18532 0.90784 1.05952 0.93159 1.20054 0.86799 0.72406 0.81210 1.90914 1.29309 1.46147 1.75421 1.84518 1.45411 1.80336 1.20887 1.21087 0.88269 0.96777 1.01672 1.19984 0.80635 1.12032 0.94438 1.50682 1.04917 0.95908 1.02085 1.96374 1.25483 1.62815 1.56950 1.96159 1.94664 1.49393 0.94342 1.20657 0.99732 0.98536 0.92424 0.88796 0.88487 0.88248 0.87426 0.86880 0.74807 0.80628 0.69620 0.80175 0.85375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -37.51 11.10 23.23 0.26 -37.25 16 2 C 0.04 1.76 5.32 87.23 0.46 2.23 16 3 Si 0.97 35.12 29.67 68.60 2.04 37.16 16 4 H -0.25 -8.74 7.11 99.48 0.71 -8.03 16 5 H -0.27 -9.18 7.11 99.48 0.71 -8.48 16 6 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 7 C -0.46 -22.07 8.74 24.73 0.22 -21.86 16 8 H 0.08 3.81 7.78 -2.91 -0.02 3.79 16 9 C 0.10 4.79 5.30 -19.89 -0.11 4.68 16 10 C -0.21 -10.21 8.71 22.56 0.20 -10.02 16 11 C -0.09 -4.16 9.91 21.96 0.22 -3.94 16 12 C -0.27 -11.27 9.98 22.38 0.22 -11.04 16 13 C -0.07 -2.69 9.97 22.38 0.22 -2.47 16 14 C -0.06 -2.39 4.68 40.77 0.19 -2.20 16 15 N -0.63 -21.18 4.80 -175.54 -0.84 -22.02 16 16 C 0.23 7.37 6.30 38.24 0.24 7.62 16 17 C -0.07 -1.81 9.44 22.69 0.21 -1.60 16 18 C -0.08 -1.97 5.87 -20.12 -0.12 -2.08 16 19 C 0.55 11.24 8.27 70.33 0.58 11.83 16 20 O -0.53 -12.93 17.13 19.95 0.34 -12.59 16 21 O -0.50 -6.73 12.68 -56.21 -0.71 -7.44 16 22 C -0.06 -1.50 9.14 22.57 0.21 -1.30 16 23 C 0.02 0.56 6.87 36.32 0.25 0.81 16 24 N -0.01 -0.52 4.98 -46.61 -0.23 -0.75 16 25 O -0.24 -11.26 19.14 3.50 0.07 -11.19 16 26 O -0.14 -5.02 19.14 3.51 0.07 -4.95 16 27 C -0.09 -3.41 8.73 22.47 0.20 -3.22 16 28 H 0.30 13.24 8.27 -92.70 -0.77 12.47 16 29 H 0.10 5.05 6.25 -2.91 -0.02 5.03 16 30 H 0.10 4.05 8.06 -2.91 -0.02 4.02 16 31 H 0.11 3.95 8.06 -2.91 -0.02 3.92 16 32 H 0.11 3.91 8.06 -2.91 -0.02 3.89 16 33 H 0.41 11.18 8.83 -92.71 -0.82 10.36 16 34 H 0.18 3.63 7.65 -2.91 -0.02 3.61 16 35 H 0.44 1.48 9.11 -74.06 -0.67 0.81 16 36 H 0.18 4.08 7.11 -2.92 -0.02 4.05 16 37 H 0.13 6.07 6.23 -2.91 -0.02 6.05 16 Total: -1.00 -62.48 342.60 3.87 -58.61 By element: Atomic # 1 Polarization: 33.31 SS G_CDS: -0.31 Total: 33.00 kcal Atomic # 6 Polarization: -35.77 SS G_CDS: 3.20 Total: -32.57 kcal Atomic # 7 Polarization: -59.20 SS G_CDS: -0.82 Total: -60.02 kcal Atomic # 8 Polarization: -35.93 SS G_CDS: -0.24 Total: -36.17 kcal Atomic # 14 Polarization: 35.12 SS G_CDS: 2.04 Total: 37.16 kcal Total: -62.48 3.87 -58.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176680755.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.341 kcal (2) G-P(sol) polarization free energy of solvation -62.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds