Wall clock time and date at job start Tue Mar 31 2020 15:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00040 * 2 1 4 4 H 1.48495 * 109.47405 * 240.00267 * 3 2 1 5 5 H 1.48506 * 109.47027 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47090 * 120.00272 * 3 2 1 7 7 C 1.37880 * 119.99924 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99703 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99722 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.46800 * 180.02562 * 9 7 2 11 11 C 1.46899 * 111.00029 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.47107 * 179.97438 * 11 10 9 13 13 N 1.30968 * 126.44426 * 89.99667 * 12 11 10 14 14 C 1.35206 * 105.58374 * 179.97438 * 13 12 11 15 15 C 1.48480 * 126.41396 * 180.02562 * 14 13 12 16 16 C 1.39253 * 119.72127 * 180.02562 * 15 14 13 17 17 C 1.38467 * 119.07306 * 179.97438 * 16 15 14 18 18 C 1.50696 * 120.74972 * 179.97438 * 17 16 15 19 19 F 1.39898 * 109.47014 * 89.99993 * 18 17 16 20 20 F 1.39900 * 109.47093 * 210.00023 * 18 17 16 21 21 F 1.39895 * 109.47222 * 329.99734 * 18 17 16 22 22 C 1.38734 * 118.49647 * 359.97438 * 17 16 15 23 23 C 1.38318 * 119.35177 * 359.97438 * 22 17 16 24 24 N 1.31714 * 120.88723 * 359.72554 * 23 22 17 25 25 N 1.30727 * 107.17607 * 0.02562 * 14 13 12 26 26 O 1.21296 * 110.10435 * 359.74878 * 25 14 13 27 27 H 0.96998 * 120.00185 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.47455 * 60.00159 * 9 7 2 29 29 H 1.09003 * 109.47449 * 299.99392 * 9 7 2 30 30 H 1.00908 * 110.99583 * 303.94914 * 10 9 7 31 31 H 1.09002 * 109.47043 * 299.99792 * 11 10 9 32 32 H 1.09001 * 109.47354 * 59.99854 * 11 10 9 33 33 H 1.08003 * 120.46226 * 359.97398 * 16 15 14 34 34 H 1.08000 * 120.32277 * 179.97438 * 22 17 16 35 35 H 1.07995 * 119.55946 * 180.02562 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5053 -4.9070 -0.0011 12 6 2.5148 -6.0259 -0.0018 13 7 3.0361 -6.6041 1.0515 14 6 3.8820 -7.5423 0.5695 15 6 4.7182 -8.4706 1.3717 16 6 5.5452 -9.3870 0.7270 17 6 6.3197 -10.2460 1.4883 18 6 7.2275 -11.2528 0.8300 19 9 8.4880 -10.6811 0.6263 20 9 7.3527 -12.3765 1.6539 21 9 6.6845 -11.6354 -0.4011 22 6 6.2411 -10.1588 2.8706 23 6 5.3987 -9.2237 3.4442 24 7 4.6772 -8.4146 2.6960 25 7 3.8257 -7.4792 -0.7350 26 8 3.0431 -6.6181 -1.0774 27 1 -0.4850 0.8400 0.0004 28 1 0.6240 -2.5567 -0.8902 29 1 0.6247 -2.5571 0.8897 30 1 2.8404 -3.5486 -0.7820 31 1 0.8801 -4.9817 0.8886 32 1 0.8807 -4.9812 -0.8913 33 1 5.5819 -9.4271 -0.3516 34 1 6.8320 -10.8147 3.4928 35 1 5.3352 -9.1526 4.5199 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211454668.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:44 Heat of formation + Delta-G solvation = -58.127164 kcal Electronic energy + Delta-G solvation = -25986.923264 eV Core-core repulsion = 21379.912210 eV Total energy + Delta-G solvation = -4607.011054 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.089 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -51.35545 -48.86146 -48.81811 -46.78141 -41.60625 -37.67984 -36.99673 -34.98389 -34.70734 -33.87679 -32.22103 -29.69746 -28.05088 -26.82814 -26.43004 -24.90690 -23.70481 -23.50534 -22.47944 -20.01145 -19.68172 -19.67104 -19.34211 -18.82828 -18.37129 -17.41705 -17.24018 -16.97672 -16.78263 -16.42330 -15.78345 -15.66770 -15.48399 -15.41400 -15.28021 -15.20714 -15.07134 -14.95115 -14.85831 -14.44498 -14.02997 -13.55817 -13.35421 -13.31619 -13.19043 -13.06000 -12.71240 -12.60795 -12.26812 -12.08320 -11.70242 -11.48341 -11.32456 -10.97693 -10.63556 -10.28830 -9.28866 -8.20794 -6.30425 -0.87114 -0.45073 0.03356 1.07943 1.30090 1.44707 1.46997 1.53609 1.55996 1.95205 2.35446 2.37116 2.42517 2.57792 2.78574 3.13793 3.17723 3.37481 3.46583 3.53493 3.60407 3.73215 3.94467 4.21108 4.24624 4.35028 4.40049 4.56176 4.59041 4.76018 5.06519 5.18166 5.26319 5.59385 5.98409 6.30707 6.49057 6.55137 6.85502 6.87720 7.39389 8.90051 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.024556 B = 0.002032 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.977269 B =13774.617301 C =13894.819846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.007 3.993 3 Si 0.967 3.033 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.538 4.538 8 H 0.061 0.939 9 C 0.211 3.789 10 N -0.687 5.687 11 C 0.152 3.848 12 C 0.211 3.789 13 N -0.463 5.463 14 C 0.200 3.800 15 C 0.181 3.819 16 C -0.091 4.091 17 C -0.143 4.143 18 C 0.521 3.479 19 F -0.173 7.173 20 F -0.164 7.164 21 F -0.176 7.176 22 C -0.086 4.086 23 C 0.117 3.883 24 N -0.455 5.455 25 N -0.373 5.373 26 O 0.088 5.912 27 H 0.266 0.734 28 H -0.016 1.016 29 H 0.014 0.986 30 H 0.341 0.659 31 H 0.119 0.881 32 H 0.091 0.909 33 H 0.156 0.844 34 H 0.196 0.804 35 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.357 -25.870 4.015 29.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.192 4.192 3 Si 0.792 3.208 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.576 4.576 8 H 0.079 0.921 9 C 0.084 3.916 10 N -0.321 5.321 11 C 0.021 3.979 12 C -0.010 4.010 13 N -0.195 5.195 14 C -0.071 4.071 15 C 0.045 3.955 16 C -0.113 4.113 17 C -0.153 4.153 18 C 0.467 3.533 19 F -0.154 7.154 20 F -0.145 7.145 21 F -0.157 7.157 22 C -0.107 4.107 23 C -0.043 4.043 24 N -0.165 5.165 25 N -0.080 5.080 26 O 0.026 5.974 27 H 0.075 0.925 28 H 0.001 0.999 29 H 0.032 0.968 30 H 0.159 0.841 31 H 0.137 0.863 32 H 0.109 0.891 33 H 0.173 0.827 34 H 0.213 0.787 35 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 13.268 -25.735 4.963 29.376 hybrid contribution 0.319 0.402 -1.622 1.701 sum 13.587 -25.334 3.342 28.941 Atomic orbital electron populations 1.70042 1.07469 1.28108 1.51189 1.25820 0.95763 1.02961 0.94653 0.85465 0.78183 0.78155 0.78971 1.19245 1.20787 1.19753 1.21452 0.93766 0.91431 1.50992 0.92064 1.19269 0.90246 0.87212 0.94857 1.60566 1.21094 1.00292 1.50117 1.20538 0.89338 0.82441 1.05561 1.29062 0.96078 0.96313 0.79533 1.72156 1.10446 1.08207 1.28734 1.23697 0.98509 0.97332 0.87566 1.17703 0.95055 0.93416 0.89350 1.21735 0.93780 0.93183 1.02573 1.20396 0.99879 0.98631 0.96358 1.17879 0.78855 0.80100 0.76483 1.93263 1.42546 1.84582 1.95006 1.93235 1.96024 1.53495 1.71775 1.93229 1.85683 1.91854 1.44982 1.22679 0.97171 0.98094 0.92729 1.23666 0.89672 0.88637 1.02278 1.67525 1.20755 1.23284 1.04889 1.74806 1.10272 1.08598 1.14322 1.85279 1.40708 1.35445 1.35938 0.92525 0.99870 0.96777 0.84130 0.86335 0.89112 0.82670 0.78652 0.76696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.70 13.29 21.45 0.28 -53.41 16 2 C 0.01 0.39 5.46 84.66 0.46 0.85 16 3 Si 0.97 43.23 29.54 68.60 2.03 45.26 16 4 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 5 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.54 -29.40 9.32 25.60 0.24 -29.16 16 8 H 0.06 3.29 7.81 -2.91 -0.02 3.27 16 9 C 0.21 10.38 5.44 85.55 0.47 10.85 16 10 N -0.69 -27.45 6.48 -521.98 -3.38 -30.83 16 11 C 0.15 4.75 6.31 85.56 0.54 5.29 16 12 C 0.21 6.63 8.01 88.36 0.71 7.34 16 13 N -0.46 -15.89 11.56 -302.55 -3.50 -19.39 16 14 C 0.20 6.23 7.90 137.33 1.09 7.32 16 15 C 0.18 4.70 6.75 42.00 0.28 4.98 16 16 C -0.09 -1.84 9.10 22.57 0.21 -1.63 16 17 C -0.14 -2.14 5.47 -19.69 -0.11 -2.24 16 18 C 0.52 7.35 3.39 71.23 0.24 7.59 16 19 F -0.17 -2.70 17.30 44.97 0.78 -1.92 16 20 F -0.16 -2.00 16.55 44.97 0.74 -1.25 16 21 F -0.18 -2.91 16.55 44.97 0.74 -2.17 16 22 C -0.09 -0.86 9.49 22.41 0.21 -0.65 16 23 C 0.12 1.55 11.18 84.73 0.95 2.50 16 24 N -0.45 -10.91 10.29 -184.80 -1.90 -12.82 16 25 N -0.37 -11.30 11.83 -59.17 -0.70 -12.00 16 26 O 0.09 2.64 11.29 74.59 0.84 3.48 16 27 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 28 H -0.02 -0.83 8.14 -2.39 -0.02 -0.85 16 29 H 0.01 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.34 12.94 8.71 -89.69 -0.78 12.16 16 31 H 0.12 3.66 8.14 -2.39 -0.02 3.64 16 32 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.16 3.07 7.49 -2.91 -0.02 3.04 16 34 H 0.20 0.38 7.69 -2.91 -0.02 0.36 16 35 H 0.22 1.10 8.06 -2.91 -0.02 1.07 16 Total: -1.00 -67.72 334.47 1.62 -66.10 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: 0.40 Total: 5.93 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: 5.28 Total: 13.03 kcal Atomic # 7 Polarization: -119.26 SS G_CDS: -9.20 Total: -128.46 kcal Atomic # 8 Polarization: 2.64 SS G_CDS: 0.84 Total: 3.48 kcal Atomic # 9 Polarization: -7.60 SS G_CDS: 2.27 Total: -5.34 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -67.72 1.62 -66.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211454668.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.973 kcal (2) G-P(sol) polarization free energy of solvation -67.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds