Wall clock time and date at job start Tue Mar 31 2020 15:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00189 * 2 1 4 4 H 1.48496 * 109.47221 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46744 * 299.99848 * 3 2 1 6 6 H 1.48499 * 109.47258 * 59.99962 * 3 2 1 7 7 C 1.37874 * 119.99691 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99739 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00352 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.47267 * 180.02562 * 9 7 2 11 11 C 1.46893 * 110.99725 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.47062 * 179.97438 * 11 10 9 13 13 N 1.30983 * 126.43988 * 89.95029 * 12 11 10 14 14 C 1.35218 * 105.58034 * 180.02562 * 13 12 11 15 15 C 1.48416 * 126.41169 * 180.26239 * 14 13 12 16 16 C 1.39323 * 120.53893 * 359.71625 * 15 14 13 17 17 N 1.31715 * 120.60348 * 180.02562 * 16 15 14 18 18 C 1.31920 * 121.84837 * 0.02562 * 17 16 15 19 19 C 1.38277 * 121.02634 * 0.02562 * 18 17 16 20 20 C 1.38454 * 119.28024 * 359.67961 * 19 18 17 21 21 C 1.50704 * 120.84187 * 180.29445 * 20 19 18 22 22 F 1.39902 * 109.46978 * 0.29456 * 21 20 19 23 23 F 1.39902 * 109.47095 * 120.29312 * 21 20 19 24 24 F 1.39897 * 109.47038 * 240.29692 * 21 20 19 25 25 N 1.30764 * 107.17073 * 0.02562 * 14 13 12 26 26 O 1.21285 * 110.09997 * 359.97438 * 25 14 13 27 27 H 0.97008 * 119.99871 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47113 * 59.99706 * 9 7 2 29 29 H 1.08999 * 109.46796 * 300.00112 * 9 7 2 30 30 H 1.00893 * 110.99669 * 303.95282 * 10 9 7 31 31 H 1.09009 * 109.47280 * 60.00069 * 11 10 9 32 32 H 1.08997 * 109.47572 * 299.99722 * 11 10 9 33 33 H 1.08003 * 119.69712 * 359.97438 * 16 15 14 34 34 H 1.07998 * 119.48736 * 179.97438 * 18 17 16 35 35 H 1.07999 * 120.35362 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8905 2.3965 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 1.5052 -4.9070 0.0001 12 6 2.5146 -6.0259 -0.0006 13 7 3.0372 -6.6029 1.0528 14 6 3.8834 -7.5411 0.5708 15 6 4.7169 -8.4711 1.3727 16 6 4.6829 -8.4309 2.7649 17 7 5.4225 -9.2553 3.4778 18 6 6.2176 -10.1431 2.9123 19 6 6.3080 -10.2447 1.5362 20 6 5.5453 -9.4038 0.7436 21 6 5.6114 -9.4887 -0.7596 22 9 6.5077 -10.4968 -1.1308 23 9 4.3413 -9.7841 -1.2663 24 9 6.0467 -8.2640 -1.2771 25 7 3.8259 -7.4789 -0.7341 26 8 3.0457 -6.6156 -1.0763 27 1 -0.4850 0.8401 0.0004 28 1 0.6239 -2.5567 -0.8902 29 1 0.6246 -2.5571 0.8897 30 1 2.8403 -3.5487 -0.7819 31 1 0.8799 -4.9817 -0.8897 32 1 0.8806 -4.9812 0.8903 33 1 4.0449 -7.7166 3.2641 34 1 6.8078 -10.8003 3.5337 35 1 6.9623 -10.9758 1.0847 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211454731.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:49 Heat of formation + Delta-G solvation = -20.862629 kcal Electronic energy + Delta-G solvation = -27201.218433 eV Core-core repulsion = 22595.823290 eV Total energy + Delta-G solvation = -4605.395143 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.089 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.40061 -47.96456 -47.77211 -45.62052 -40.81443 -36.32030 -35.85068 -34.13519 -33.06599 -32.22285 -31.30845 -28.05383 -27.29955 -25.51885 -25.08566 -23.27565 -23.14848 -21.77364 -21.34013 -19.11256 -18.79607 -18.69490 -18.16937 -17.79581 -16.82953 -16.51804 -16.22827 -15.79815 -15.30813 -14.88812 -14.85977 -14.64000 -14.46450 -14.36467 -14.23975 -14.03026 -13.94880 -13.90909 -13.53362 -12.94219 -12.73990 -12.57879 -12.26167 -12.22238 -11.72810 -11.46779 -11.16706 -10.94062 -10.83267 -10.73488 -10.40899 -10.25029 -10.04945 -9.38893 -9.31809 -8.59649 -7.66747 -6.13613 -4.16084 -0.10951 0.32958 1.19321 2.19326 2.20384 2.74441 3.05289 3.11845 3.26912 3.31806 3.34720 3.39774 3.56611 3.66760 3.89635 4.09634 4.27491 4.36103 4.39928 4.53501 4.84111 5.05285 5.06952 5.11851 5.23659 5.28219 5.43886 5.54168 5.78431 5.84722 5.94073 6.94018 7.17863 7.24033 7.59215 7.94045 7.99019 8.06258 8.34007 8.91652 9.49446 10.97400 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.020157 B = 0.002608 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.734172 B =10731.850437 C =11181.705726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.901 3.099 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.517 4.517 8 H 0.064 0.936 9 C 0.195 3.805 10 N -0.681 5.681 11 C 0.146 3.854 12 C 0.216 3.784 13 N -0.457 5.457 14 C 0.184 3.816 15 C -0.013 4.013 16 C 0.151 3.849 17 N -0.457 5.457 18 C 0.116 3.884 19 C -0.128 4.128 20 C -0.115 4.115 21 C 0.513 3.487 22 F -0.177 7.177 23 F -0.162 7.162 24 F -0.160 7.160 25 N -0.365 5.365 26 O 0.092 5.908 27 H 0.263 0.737 28 H -0.004 1.004 29 H 0.036 0.964 30 H 0.336 0.664 31 H 0.065 0.935 32 H 0.116 0.884 33 H 0.184 0.816 34 H 0.175 0.825 35 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.359 -23.207 1.641 25.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.729 3.271 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.556 4.556 8 H 0.083 0.917 9 C 0.070 3.930 10 N -0.314 5.314 11 C 0.014 3.986 12 C -0.005 4.005 13 N -0.189 5.189 14 C -0.086 4.086 15 C -0.017 4.017 16 C -0.008 4.008 17 N -0.165 5.165 18 C -0.042 4.042 19 C -0.148 4.148 20 C -0.126 4.126 21 C 0.459 3.541 22 F -0.158 7.158 23 F -0.143 7.143 24 F -0.141 7.141 25 N -0.069 5.069 26 O 0.028 5.972 27 H 0.072 0.928 28 H 0.013 0.987 29 H 0.054 0.946 30 H 0.153 0.847 31 H 0.083 0.917 32 H 0.134 0.866 33 H 0.201 0.799 34 H 0.192 0.808 35 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 10.759 -23.613 3.101 26.133 hybrid contribution 0.056 0.963 -2.175 2.379 sum 10.816 -22.650 0.926 25.117 Atomic orbital electron populations 1.69956 1.06072 1.26969 1.50493 1.24966 0.94908 0.99447 0.95075 0.86391 0.80067 0.83088 0.77588 1.19613 1.21012 1.20894 1.21139 0.93660 0.89852 1.50952 0.91734 1.19658 0.90304 0.86459 0.96584 1.60794 1.21439 0.99571 1.49593 1.20586 0.89385 0.84415 1.04189 1.29158 0.95847 0.96133 0.79396 1.71981 1.10294 1.07982 1.28660 1.23461 0.99337 0.97942 0.87850 1.18084 0.95579 0.93749 0.94259 1.23164 0.94389 0.95111 0.88126 1.67871 1.04811 1.03547 1.40237 1.23095 0.94470 0.94772 0.91851 1.22042 0.98688 0.98851 0.95241 1.20536 1.00164 0.99141 0.92748 1.17897 0.74461 0.74378 0.87412 1.93173 1.68579 1.61248 1.92805 1.93258 1.39498 1.92925 1.88634 1.93276 1.89293 1.43313 1.88219 1.75015 1.09669 1.07873 1.14356 1.85295 1.40571 1.35215 1.36110 0.92773 0.98656 0.94612 0.84662 0.91697 0.86594 0.79904 0.80779 0.82428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.57 13.29 55.43 0.74 -24.83 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -13.92 9.32 -34.44 -0.32 -14.24 16 8 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 9 C 0.20 4.67 5.44 -4.97 -0.03 4.64 16 10 N -0.68 -13.23 6.48 -116.34 -0.75 -13.99 16 11 C 0.15 2.22 6.31 -4.98 -0.03 2.18 16 12 C 0.22 3.26 8.01 -12.98 -0.10 3.16 16 13 N -0.46 -7.10 11.28 -9.88 -0.11 -7.21 16 14 C 0.18 2.74 7.47 -156.12 -1.17 1.57 16 15 C -0.01 -0.16 5.87 -104.75 -0.61 -0.77 16 16 C 0.15 1.67 10.87 -17.20 -0.19 1.48 16 17 N -0.46 -4.54 10.35 -12.98 -0.13 -4.68 16 18 C 0.12 0.82 11.17 -17.50 -0.20 0.63 16 19 C -0.13 -0.97 9.49 -39.49 -0.37 -1.34 16 20 C -0.11 -1.25 5.42 -103.99 -0.56 -1.81 16 21 C 0.51 6.14 2.78 36.01 0.10 6.24 16 22 F -0.18 -1.81 16.08 2.25 0.04 -1.77 16 23 F -0.16 -2.16 15.14 2.25 0.03 -2.13 16 24 F -0.16 -2.23 15.12 2.25 0.03 -2.19 16 25 N -0.36 -5.66 7.24 30.97 0.22 -5.44 16 26 O 0.09 1.40 11.29 18.03 0.20 1.60 16 27 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.00 -0.11 8.14 -51.93 -0.42 -0.53 16 29 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.34 6.31 8.71 -39.30 -0.34 5.97 16 31 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 32 H 0.12 1.69 8.14 -51.93 -0.42 1.27 16 33 H 0.18 1.93 7.89 -52.48 -0.41 1.51 16 34 H 0.18 0.58 8.06 -52.49 -0.42 0.16 16 35 H 0.16 0.76 7.26 -52.49 -0.38 0.37 16 LS Contribution 325.36 15.07 4.90 4.90 Total: -1.00 -30.70 325.36 -6.23 -36.93 By element: Atomic # 1 Polarization: 2.35 SS G_CDS: -2.80 Total: -0.45 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: -3.58 Total: 3.23 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: -0.04 Total: -56.15 kcal Atomic # 8 Polarization: 1.40 SS G_CDS: 0.20 Total: 1.60 kcal Atomic # 9 Polarization: -6.20 SS G_CDS: 0.10 Total: -6.10 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.70 -6.23 -36.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211454731.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.066 kcal (2) G-P(sol) polarization free energy of solvation -30.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds