Wall clock time and date at job start Tue Mar 31 2020 15:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00189 * 2 1 4 4 H 1.48496 * 109.47221 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46744 * 299.99848 * 3 2 1 6 6 H 1.48499 * 109.47258 * 59.99962 * 3 2 1 7 7 C 1.37874 * 119.99691 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99739 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00352 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.47267 * 180.02562 * 9 7 2 11 11 C 1.46893 * 110.99725 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.47062 * 179.97438 * 11 10 9 13 13 N 1.30983 * 126.43988 * 89.95029 * 12 11 10 14 14 C 1.35218 * 105.58034 * 180.02562 * 13 12 11 15 15 C 1.48416 * 126.41169 * 180.26239 * 14 13 12 16 16 C 1.39323 * 120.53893 * 359.71625 * 15 14 13 17 17 N 1.31715 * 120.60348 * 180.02562 * 16 15 14 18 18 C 1.31920 * 121.84837 * 0.02562 * 17 16 15 19 19 C 1.38277 * 121.02634 * 0.02562 * 18 17 16 20 20 C 1.38454 * 119.28024 * 359.67961 * 19 18 17 21 21 C 1.50704 * 120.84187 * 180.29445 * 20 19 18 22 22 F 1.39902 * 109.46978 * 0.29456 * 21 20 19 23 23 F 1.39902 * 109.47095 * 120.29312 * 21 20 19 24 24 F 1.39897 * 109.47038 * 240.29692 * 21 20 19 25 25 N 1.30764 * 107.17073 * 0.02562 * 14 13 12 26 26 O 1.21285 * 110.09997 * 359.97438 * 25 14 13 27 27 H 0.97008 * 119.99871 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47113 * 59.99706 * 9 7 2 29 29 H 1.08999 * 109.46796 * 300.00112 * 9 7 2 30 30 H 1.00893 * 110.99669 * 303.95282 * 10 9 7 31 31 H 1.09009 * 109.47280 * 60.00069 * 11 10 9 32 32 H 1.08997 * 109.47572 * 299.99722 * 11 10 9 33 33 H 1.08003 * 119.69712 * 359.97438 * 16 15 14 34 34 H 1.07998 * 119.48736 * 179.97438 * 18 17 16 35 35 H 1.07999 * 120.35362 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8905 2.3965 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 1.5052 -4.9070 0.0001 12 6 2.5146 -6.0259 -0.0006 13 7 3.0372 -6.6029 1.0528 14 6 3.8834 -7.5411 0.5708 15 6 4.7169 -8.4711 1.3727 16 6 4.6829 -8.4309 2.7649 17 7 5.4225 -9.2553 3.4778 18 6 6.2176 -10.1431 2.9123 19 6 6.3080 -10.2447 1.5362 20 6 5.5453 -9.4038 0.7436 21 6 5.6114 -9.4887 -0.7596 22 9 6.5077 -10.4968 -1.1308 23 9 4.3413 -9.7841 -1.2663 24 9 6.0467 -8.2640 -1.2771 25 7 3.8259 -7.4789 -0.7341 26 8 3.0457 -6.6156 -1.0763 27 1 -0.4850 0.8401 0.0004 28 1 0.6239 -2.5567 -0.8902 29 1 0.6246 -2.5571 0.8897 30 1 2.8403 -3.5487 -0.7819 31 1 0.8799 -4.9817 -0.8897 32 1 0.8806 -4.9812 0.8903 33 1 4.0449 -7.7166 3.2641 34 1 6.8078 -10.8003 3.5337 35 1 6.9623 -10.9758 1.0847 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211454731.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:48 Heat of formation + Delta-G solvation = -42.629939 kcal Electronic energy + Delta-G solvation = -27202.162335 eV Core-core repulsion = 22595.823290 eV Total energy + Delta-G solvation = -4606.339044 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.089 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -51.33396 -48.86598 -48.76922 -46.78599 -41.55482 -37.69486 -37.11928 -35.22859 -34.58363 -33.51675 -32.30573 -29.71392 -28.17221 -26.87778 -26.32615 -24.36628 -24.01923 -23.54828 -22.44557 -19.98794 -19.69726 -19.64961 -19.35787 -19.02735 -18.42704 -17.48927 -17.19647 -16.96287 -16.53943 -16.42698 -15.79433 -15.75721 -15.43308 -15.29098 -15.20510 -15.15737 -15.06705 -14.92992 -14.84448 -14.41121 -13.98926 -13.56948 -13.38814 -13.31450 -13.27732 -13.12115 -12.68686 -12.65458 -12.34071 -12.11065 -11.78778 -11.36259 -11.25385 -10.98102 -10.65395 -10.23517 -9.30169 -8.21855 -6.31172 -0.94904 -0.39665 0.04334 1.13422 1.31407 1.43144 1.44808 1.55066 1.57982 2.06944 2.35607 2.41854 2.43779 2.57913 2.75539 3.13145 3.16623 3.23632 3.41426 3.55248 3.59615 3.80523 3.95396 4.22372 4.26989 4.34836 4.47604 4.55477 4.68343 4.70947 5.05857 5.24536 5.25799 5.59258 5.97863 6.29125 6.53518 6.53648 6.83252 6.85534 7.38936 8.89448 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.020157 B = 0.002608 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.734172 B =10731.850437 C =11181.705726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.007 3.993 3 Si 0.967 3.033 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.536 4.536 8 H 0.061 0.939 9 C 0.210 3.790 10 N -0.686 5.686 11 C 0.151 3.849 12 C 0.216 3.784 13 N -0.469 5.469 14 C 0.188 3.812 15 C -0.044 4.044 16 C 0.149 3.851 17 N -0.472 5.472 18 C 0.133 3.867 19 C -0.112 4.112 20 C -0.124 4.124 21 C 0.511 3.489 22 F -0.165 7.165 23 F -0.174 7.174 24 F -0.176 7.176 25 N -0.379 5.379 26 O 0.087 5.913 27 H 0.266 0.734 28 H -0.018 1.018 29 H 0.016 0.984 30 H 0.340 0.660 31 H 0.088 0.912 32 H 0.123 0.877 33 H 0.179 0.821 34 H 0.222 0.778 35 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.195 -24.637 2.408 27.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.192 4.192 3 Si 0.792 3.208 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.574 4.574 8 H 0.079 0.921 9 C 0.084 3.916 10 N -0.319 5.319 11 C 0.020 3.980 12 C -0.005 4.005 13 N -0.202 5.202 14 C -0.083 4.083 15 C -0.048 4.048 16 C -0.009 4.009 17 N -0.179 5.179 18 C -0.024 4.024 19 C -0.132 4.132 20 C -0.135 4.135 21 C 0.456 3.544 22 F -0.147 7.147 23 F -0.155 7.155 24 F -0.157 7.157 25 N -0.085 5.085 26 O 0.025 5.975 27 H 0.075 0.925 28 H 0.000 1.000 29 H 0.034 0.966 30 H 0.158 0.842 31 H 0.106 0.894 32 H 0.141 0.859 33 H 0.196 0.804 34 H 0.238 0.762 35 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 12.590 -25.046 3.854 28.296 hybrid contribution -0.416 1.217 -2.362 2.690 sum 12.174 -23.830 1.491 26.801 Atomic orbital electron populations 1.70056 1.07468 1.27973 1.51373 1.25807 0.95743 1.02942 0.94682 0.85368 0.78871 0.78843 0.77718 1.19102 1.20356 1.20493 1.21510 0.93767 0.91427 1.50723 0.92084 1.19280 0.90250 0.87221 0.94899 1.60564 1.21021 1.00277 1.50057 1.20559 0.89327 0.82430 1.05638 1.28986 0.95817 0.96160 0.79554 1.71980 1.10737 1.08485 1.28955 1.23914 0.98858 0.97676 0.87815 1.18164 0.97118 0.94898 0.94650 1.23089 0.94707 0.95481 0.87593 1.67948 1.05424 1.04163 1.40387 1.23906 0.92824 0.93511 0.92198 1.22486 0.97498 0.97962 0.95227 1.20619 1.00905 0.99839 0.92102 1.18068 0.74124 0.74041 0.88132 1.93188 1.68061 1.60582 1.92820 1.93229 1.40407 1.92956 1.88925 1.93240 1.89418 1.44453 1.88571 1.75004 1.10237 1.08387 1.14867 1.85275 1.40739 1.35391 1.36062 0.92536 0.99993 0.96571 0.84235 0.89422 0.85923 0.80400 0.76196 0.79088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.50 13.29 21.45 0.28 -53.22 16 2 C 0.01 0.39 5.46 84.65 0.46 0.85 16 3 Si 0.97 43.15 29.54 68.60 2.03 45.17 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 6 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.54 -29.10 9.32 25.60 0.24 -28.86 16 8 H 0.06 3.28 7.81 -2.91 -0.02 3.26 16 9 C 0.21 10.24 5.44 85.56 0.47 10.71 16 10 N -0.69 -26.92 6.48 -521.99 -3.38 -30.30 16 11 C 0.15 4.60 6.31 85.56 0.54 5.14 16 12 C 0.22 6.59 8.01 88.36 0.71 7.30 16 13 N -0.47 -14.76 11.28 -302.50 -3.41 -18.17 16 14 C 0.19 5.64 7.47 137.29 1.03 6.66 16 15 C -0.04 -1.08 5.87 -19.95 -0.12 -1.19 16 16 C 0.15 3.20 10.87 84.97 0.92 4.12 16 17 N -0.47 -8.29 10.35 -194.96 -2.02 -10.31 16 18 C 0.13 1.38 11.17 84.69 0.95 2.32 16 19 C -0.11 -1.31 9.49 22.33 0.21 -1.09 16 20 C -0.12 -2.50 5.42 -19.45 -0.11 -2.61 16 21 C 0.51 11.79 2.78 71.24 0.20 11.99 16 22 F -0.17 -3.07 16.08 44.97 0.72 -2.35 16 23 F -0.17 -4.62 15.14 44.97 0.68 -3.94 16 24 F -0.18 -4.88 15.12 44.97 0.68 -4.20 16 25 N -0.38 -11.93 7.24 -59.13 -0.43 -12.36 16 26 O 0.09 2.68 11.29 74.60 0.84 3.52 16 27 H 0.27 14.40 8.31 -92.70 -0.77 13.63 16 28 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 29 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.34 12.88 8.71 -89.70 -0.78 12.10 16 31 H 0.09 2.31 8.14 -2.38 -0.02 2.29 16 32 H 0.12 3.59 8.14 -2.39 -0.02 3.57 16 33 H 0.18 3.81 7.89 -2.91 -0.02 3.78 16 34 H 0.22 0.19 8.06 -2.91 -0.02 0.16 16 35 H 0.19 0.91 7.26 -2.91 -0.02 0.89 16 Total: -1.00 -66.87 325.36 1.89 -64.97 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: 0.40 Total: 5.87 kcal Atomic # 6 Polarization: 9.83 SS G_CDS: 5.50 Total: 15.33 kcal Atomic # 7 Polarization: -115.41 SS G_CDS: -8.96 Total: -124.37 kcal Atomic # 8 Polarization: 2.68 SS G_CDS: 0.84 Total: 3.52 kcal Atomic # 9 Polarization: -12.58 SS G_CDS: 2.08 Total: -10.49 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Total: -66.87 1.89 -64.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211454731.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.343 kcal (2) G-P(sol) polarization free energy of solvation -66.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds