Wall clock time and date at job start Tue Mar 31 2020 15:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 120.00132 * 2 1 4 4 H 1.48497 * 109.46900 * 239.99900 * 3 2 1 5 5 H 1.48500 * 109.46773 * 359.97438 * 3 2 1 6 6 H 1.48487 * 109.47178 * 119.99659 * 3 2 1 7 7 C 1.37884 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99900 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99584 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46903 * 180.02562 * 9 7 2 11 11 C 1.46903 * 111.00018 * 180.02562 * 10 9 7 12 12 C 1.50700 * 109.46978 * 179.97438 * 11 10 9 13 13 N 1.30974 * 126.44125 * 89.99713 * 12 11 10 14 14 C 1.35207 * 105.57678 * 179.97438 * 13 12 11 15 15 C 1.48481 * 126.40874 * 179.97438 * 14 13 12 16 16 C 1.39250 * 119.72131 * 179.72971 * 15 14 13 17 17 C 1.38474 * 119.07230 * 179.72726 * 16 15 14 18 18 C 1.38728 * 118.49596 * 0.53869 * 17 16 15 19 19 C 1.38314 * 119.35320 * 359.72328 * 18 17 16 20 20 C 1.50702 * 119.55960 * 180.02562 * 19 18 17 21 21 F 1.39899 * 109.47534 * 184.97670 * 20 19 18 22 22 F 1.39906 * 109.46955 * 304.97768 * 20 19 18 23 23 F 1.39905 * 109.47063 * 64.97310 * 20 19 18 24 24 N 1.31708 * 120.88794 * 359.97438 * 19 18 17 25 25 N 1.30719 * 107.18374 * 0.02562 * 14 13 12 26 26 O 1.21295 * 110.09908 * 359.97438 * 25 14 13 27 27 H 0.97005 * 119.99992 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47054 * 60.00371 * 9 7 2 29 29 H 1.08999 * 109.47306 * 299.99916 * 9 7 2 30 30 H 1.00900 * 110.99907 * 303.95067 * 10 9 7 31 31 H 1.08997 * 109.47313 * 59.99855 * 11 10 9 32 32 H 1.09001 * 109.46756 * 299.99326 * 11 10 9 33 33 H 1.07998 * 120.46304 * 359.97438 * 16 15 14 34 34 H 1.07995 * 120.75059 * 180.27920 * 17 16 15 35 35 H 1.08004 * 120.32163 * 179.70492 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2056 -3.6157 0.0018 11 6 1.5053 -4.9071 0.0012 12 6 2.5149 -6.0259 0.0019 13 7 3.0353 -6.6036 1.0558 14 6 3.8816 -7.5420 0.5748 15 6 4.7180 -8.4692 1.3781 16 6 5.5407 -9.3901 0.7346 17 6 6.3194 -10.2446 1.4969 18 6 6.2401 -10.1564 2.8791 19 6 5.3968 -9.2214 3.4515 20 6 5.3075 -9.1213 4.9526 21 9 4.3181 -8.1953 5.3002 22 9 4.9819 -10.3735 5.4849 23 9 6.5395 -8.7023 5.4662 24 7 4.6716 -8.4167 2.7025 25 7 3.8264 -7.4795 -0.7297 26 8 3.0473 -6.6156 -1.0730 27 1 -0.4850 0.8401 -0.0004 28 1 0.6247 -2.5571 -0.8897 29 1 0.6240 -2.5567 0.8903 30 1 2.8411 -3.5490 -0.7792 31 1 0.8814 -4.9817 -0.8894 32 1 0.8795 -4.9814 0.8906 33 1 5.5741 -9.4345 -0.3440 34 1 6.9705 -10.9661 1.0260 35 1 6.8308 -10.8118 3.5020 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211454852.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:02 Heat of formation + Delta-G solvation = -32.888354 kcal Electronic energy + Delta-G solvation = -26212.909304 eV Core-core repulsion = 21606.992687 eV Total energy + Delta-G solvation = -4605.916617 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.089 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.43242 -47.99711 -47.82872 -45.59682 -40.90767 -36.23850 -35.71408 -33.59722 -33.34324 -32.49740 -31.52505 -28.04274 -27.11224 -25.70477 -25.11343 -23.39628 -23.05778 -21.75558 -21.36364 -18.95657 -18.84385 -18.76135 -18.13880 -17.77999 -16.86929 -16.69560 -16.33447 -15.70949 -15.25605 -15.04697 -14.65334 -14.63363 -14.56184 -14.34357 -14.21418 -14.02108 -13.98432 -13.82219 -13.49683 -13.24041 -12.97692 -12.43833 -12.21272 -12.02977 -11.67455 -11.42732 -11.03665 -10.87784 -10.76918 -10.68675 -10.49414 -10.29367 -10.02703 -9.50841 -9.33218 -8.55910 -7.62234 -6.10507 -4.13054 -0.09480 0.36864 1.18149 2.02037 2.13810 2.74590 2.89719 3.07166 3.22588 3.31664 3.35683 3.39139 3.50945 3.83358 4.04446 4.20324 4.28552 4.35486 4.39947 4.53388 4.63820 4.92997 5.13414 5.19073 5.26426 5.33111 5.47236 5.58567 5.70120 5.84834 5.97866 6.98138 7.02767 7.21213 7.62097 7.97375 8.04355 8.10925 8.37559 8.94020 9.52106 11.00451 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.014976 B = 0.002452 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.244549 B =11417.419901 C =12505.532353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.059 3.941 3 Si 0.902 3.098 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.519 4.519 8 H 0.063 0.937 9 C 0.196 3.804 10 N -0.680 5.680 11 C 0.146 3.854 12 C 0.210 3.790 13 N -0.437 5.437 14 C 0.202 3.798 15 C 0.215 3.785 16 C -0.106 4.106 17 C -0.069 4.069 18 C -0.112 4.112 19 C 0.043 3.957 20 C 0.524 3.476 21 F -0.155 7.155 22 F -0.171 7.171 23 F -0.170 7.170 24 N -0.403 5.403 25 N -0.368 5.368 26 O 0.086 5.914 27 H 0.264 0.736 28 H -0.005 1.005 29 H 0.036 0.964 30 H 0.336 0.664 31 H 0.065 0.935 32 H 0.116 0.884 33 H 0.156 0.844 34 H 0.158 0.842 35 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.706 -24.712 3.139 27.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.143 4.143 3 Si 0.729 3.271 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.557 4.557 8 H 0.082 0.918 9 C 0.071 3.929 10 N -0.314 5.314 11 C 0.015 3.985 12 C -0.011 4.011 13 N -0.169 5.169 14 C -0.068 4.068 15 C 0.076 3.924 16 C -0.128 4.128 17 C -0.095 4.095 18 C -0.133 4.133 19 C -0.098 4.098 20 C 0.468 3.532 21 F -0.136 7.136 22 F -0.153 7.153 23 F -0.151 7.151 24 N -0.113 5.113 25 N -0.075 5.075 26 O 0.022 5.978 27 H 0.073 0.927 28 H 0.013 0.987 29 H 0.054 0.946 30 H 0.152 0.848 31 H 0.083 0.917 32 H 0.134 0.866 33 H 0.174 0.826 34 H 0.176 0.824 35 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 11.572 -24.533 4.195 27.448 hybrid contribution 0.515 0.483 -1.055 1.270 sum 12.087 -24.051 3.140 27.100 Atomic orbital electron populations 1.69935 1.06070 1.27168 1.50344 1.24962 0.94906 0.99406 0.95071 0.86499 0.79415 0.82417 0.78742 1.20216 1.21268 1.20061 1.21068 0.93588 0.89901 1.51175 0.91845 1.19647 0.90298 0.86421 0.96566 1.60794 1.21412 0.99599 1.49551 1.20577 0.89393 0.84393 1.04143 1.29284 0.96104 0.96390 0.79347 1.72215 1.09529 1.07303 1.27898 1.23198 0.98803 0.97447 0.87394 1.17718 0.94167 0.92969 0.87539 1.22303 0.94066 0.93595 1.02794 1.21600 0.97329 0.97854 0.92674 1.21992 0.97301 0.97374 0.96639 1.20903 0.98529 0.96979 0.93387 1.17784 0.74566 0.74364 0.86464 1.93295 1.61471 1.65794 1.93001 1.93233 1.92568 1.41705 1.87761 1.93246 1.43375 1.90118 1.88377 1.66948 1.18160 1.20425 1.05746 1.74805 1.10288 1.08328 1.14059 1.85286 1.40831 1.35338 1.36307 0.92671 0.98683 0.94601 0.84760 0.91740 0.86597 0.82602 0.82395 0.82833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.90 13.29 55.43 0.74 -25.17 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -14.19 9.32 -34.44 -0.32 -14.51 16 8 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 9 C 0.20 4.80 5.44 -4.98 -0.03 4.77 16 10 N -0.68 -13.66 6.48 -116.34 -0.75 -14.42 16 11 C 0.15 2.33 6.31 -4.97 -0.03 2.30 16 12 C 0.21 3.31 8.01 -12.99 -0.10 3.21 16 13 N -0.44 -7.61 11.56 -9.90 -0.11 -7.72 16 14 C 0.20 3.11 7.90 -156.14 -1.23 1.88 16 15 C 0.22 2.82 6.76 -82.93 -0.56 2.26 16 16 C -0.11 -0.93 9.73 -39.12 -0.38 -1.31 16 17 C -0.07 -0.41 10.17 -39.31 -0.40 -0.81 16 18 C -0.11 -0.79 9.61 -39.37 -0.38 -1.17 16 19 C 0.04 0.47 6.26 -82.62 -0.52 -0.04 16 20 C 0.52 5.68 3.31 36.01 0.12 5.80 16 21 F -0.15 -2.09 16.85 2.25 0.04 -2.05 16 22 F -0.17 -1.65 17.16 2.25 0.04 -1.61 16 23 F -0.17 -1.76 17.28 2.25 0.04 -1.72 16 24 N -0.40 -5.66 9.66 -6.02 -0.06 -5.72 16 25 N -0.37 -5.36 11.83 30.96 0.37 -4.99 16 26 O 0.09 1.26 11.29 18.05 0.20 1.46 16 27 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 28 H 0.00 -0.12 8.14 -51.93 -0.42 -0.54 16 29 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.34 6.39 8.71 -39.29 -0.34 6.05 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.12 1.83 8.14 -51.93 -0.42 1.40 16 33 H 0.16 1.12 7.86 -52.49 -0.41 0.71 16 34 H 0.16 0.32 8.06 -52.49 -0.42 -0.10 16 35 H 0.15 0.59 8.06 -52.48 -0.42 0.17 16 LS Contribution 335.92 15.07 5.06 5.06 Total: -1.00 -31.99 335.92 -6.23 -38.22 By element: Atomic # 1 Polarization: 1.32 SS G_CDS: -2.84 Total: -1.51 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: -3.93 Total: 3.90 kcal Atomic # 7 Polarization: -58.19 SS G_CDS: 0.18 Total: -58.02 kcal Atomic # 8 Polarization: 1.26 SS G_CDS: 0.20 Total: 1.46 kcal Atomic # 9 Polarization: -5.50 SS G_CDS: 0.12 Total: -5.39 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.99 -6.23 -38.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211454852.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.332 kcal (2) G-P(sol) polarization free energy of solvation -31.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds