Wall clock time and date at job start Tue Mar 31 2020 15:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 120.00132 * 2 1 4 4 H 1.48497 * 109.46900 * 239.99900 * 3 2 1 5 5 H 1.48500 * 109.46773 * 359.97438 * 3 2 1 6 6 H 1.48487 * 109.47178 * 119.99659 * 3 2 1 7 7 C 1.37884 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99900 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99584 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46903 * 180.02562 * 9 7 2 11 11 C 1.46903 * 111.00018 * 180.02562 * 10 9 7 12 12 C 1.50700 * 109.46978 * 179.97438 * 11 10 9 13 13 N 1.30974 * 126.44125 * 89.99713 * 12 11 10 14 14 C 1.35207 * 105.57678 * 179.97438 * 13 12 11 15 15 C 1.48481 * 126.40874 * 179.97438 * 14 13 12 16 16 C 1.39250 * 119.72131 * 179.72971 * 15 14 13 17 17 C 1.38474 * 119.07230 * 179.72726 * 16 15 14 18 18 C 1.38728 * 118.49596 * 0.53869 * 17 16 15 19 19 C 1.38314 * 119.35320 * 359.72328 * 18 17 16 20 20 C 1.50702 * 119.55960 * 180.02562 * 19 18 17 21 21 F 1.39899 * 109.47534 * 184.97670 * 20 19 18 22 22 F 1.39906 * 109.46955 * 304.97768 * 20 19 18 23 23 F 1.39905 * 109.47063 * 64.97310 * 20 19 18 24 24 N 1.31708 * 120.88794 * 359.97438 * 19 18 17 25 25 N 1.30719 * 107.18374 * 0.02562 * 14 13 12 26 26 O 1.21295 * 110.09908 * 359.97438 * 25 14 13 27 27 H 0.97005 * 119.99992 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47054 * 60.00371 * 9 7 2 29 29 H 1.08999 * 109.47306 * 299.99916 * 9 7 2 30 30 H 1.00900 * 110.99907 * 303.95067 * 10 9 7 31 31 H 1.08997 * 109.47313 * 59.99855 * 11 10 9 32 32 H 1.09001 * 109.46756 * 299.99326 * 11 10 9 33 33 H 1.07998 * 120.46304 * 359.97438 * 16 15 14 34 34 H 1.07995 * 120.75059 * 180.27920 * 17 16 15 35 35 H 1.08004 * 120.32163 * 179.70492 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2056 -3.6157 0.0018 11 6 1.5053 -4.9071 0.0012 12 6 2.5149 -6.0259 0.0019 13 7 3.0353 -6.6036 1.0558 14 6 3.8816 -7.5420 0.5748 15 6 4.7180 -8.4692 1.3781 16 6 5.5407 -9.3901 0.7346 17 6 6.3194 -10.2446 1.4969 18 6 6.2401 -10.1564 2.8791 19 6 5.3968 -9.2214 3.4515 20 6 5.3075 -9.1213 4.9526 21 9 4.3181 -8.1953 5.3002 22 9 4.9819 -10.3735 5.4849 23 9 6.5395 -8.7023 5.4662 24 7 4.6716 -8.4167 2.7025 25 7 3.8264 -7.4795 -0.7297 26 8 3.0473 -6.6156 -1.0730 27 1 -0.4850 0.8401 -0.0004 28 1 0.6247 -2.5571 -0.8897 29 1 0.6240 -2.5567 0.8903 30 1 2.8411 -3.5490 -0.7792 31 1 0.8814 -4.9817 -0.8894 32 1 0.8795 -4.9814 0.8906 33 1 5.5741 -9.4345 -0.3440 34 1 6.9705 -10.9661 1.0260 35 1 6.8308 -10.8118 3.5020 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211454852.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:02 Heat of formation + Delta-G solvation = -56.744908 kcal Electronic energy + Delta-G solvation = -26213.943802 eV Core-core repulsion = 21606.992687 eV Total energy + Delta-G solvation = -4606.951115 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.089 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -51.27873 -48.79869 -48.74955 -46.76679 -41.63572 -37.68877 -37.00559 -35.01418 -34.19828 -33.91371 -32.66200 -29.72722 -27.98650 -26.81487 -26.54951 -24.52142 -23.82592 -23.56749 -22.49087 -19.84556 -19.67462 -19.62526 -19.32615 -18.93684 -18.50341 -17.42344 -17.30262 -16.98166 -16.59151 -16.43272 -15.86321 -15.54395 -15.45122 -15.37756 -15.18515 -15.15682 -14.90055 -14.88986 -14.57060 -14.44050 -14.03163 -13.88790 -13.36213 -13.22088 -13.14027 -13.04359 -12.71883 -12.61676 -12.25440 -12.08991 -11.63531 -11.35366 -11.29413 -11.04957 -10.64662 -10.37537 -9.29782 -8.21849 -6.31694 -0.85374 -0.34361 0.06878 1.08758 1.22648 1.43679 1.46379 1.52444 1.55013 1.95241 2.27204 2.36776 2.41944 2.59837 2.91124 3.12759 3.23951 3.48346 3.58250 3.62742 3.65219 3.76316 3.97167 4.11483 4.27786 4.30827 4.54515 4.71664 4.73086 4.82816 5.05146 5.18413 5.24795 5.58247 5.97214 6.27330 6.29951 6.54516 6.84389 6.87201 7.38247 8.89122 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.014976 B = 0.002452 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.244549 B =11417.419901 C =12505.532353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.007 3.993 3 Si 0.968 3.032 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.539 4.539 8 H 0.061 0.939 9 C 0.211 3.789 10 N -0.688 5.688 11 C 0.152 3.848 12 C 0.213 3.787 13 N -0.472 5.472 14 C 0.200 3.800 15 C 0.175 3.825 16 C -0.097 4.097 17 C -0.047 4.047 18 C -0.093 4.093 19 C 0.021 3.979 20 C 0.524 3.476 21 F -0.178 7.178 22 F -0.164 7.164 23 F -0.168 7.168 24 N -0.449 5.449 25 N -0.365 5.365 26 O 0.088 5.912 27 H 0.266 0.734 28 H -0.015 1.015 29 H 0.012 0.988 30 H 0.342 0.658 31 H 0.093 0.907 32 H 0.115 0.885 33 H 0.172 0.828 34 H 0.211 0.789 35 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.027 -26.545 2.470 30.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.192 4.192 3 Si 0.792 3.208 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.198 1.198 7 C -0.578 4.578 8 H 0.080 0.920 9 C 0.084 3.916 10 N -0.321 5.321 11 C 0.021 3.979 12 C -0.008 4.008 13 N -0.205 5.205 14 C -0.071 4.071 15 C 0.037 3.963 16 C -0.119 4.119 17 C -0.072 4.072 18 C -0.113 4.113 19 C -0.120 4.120 20 C 0.469 3.531 21 F -0.159 7.159 22 F -0.145 7.145 23 F -0.149 7.149 24 N -0.159 5.159 25 N -0.072 5.072 26 O 0.026 5.974 27 H 0.075 0.925 28 H 0.002 0.998 29 H 0.030 0.970 30 H 0.160 0.840 31 H 0.110 0.890 32 H 0.133 0.867 33 H 0.189 0.811 34 H 0.228 0.772 35 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 13.902 -26.386 3.509 30.030 hybrid contribution -0.135 0.888 -0.796 1.200 sum 13.767 -25.498 2.713 29.104 Atomic orbital electron populations 1.70044 1.07511 1.28140 1.51171 1.25827 0.95758 1.02992 0.94593 0.85459 0.78195 0.78100 0.78998 1.19088 1.20726 1.19837 1.21461 0.93788 0.91443 1.51065 0.92038 1.19265 0.90251 0.87236 0.94809 1.60550 1.21095 1.00284 1.50208 1.20523 0.89404 0.82516 1.05465 1.28997 0.95992 0.96316 0.79538 1.72201 1.10710 1.08567 1.28989 1.23730 0.98407 0.97202 0.87749 1.17872 0.96214 0.94719 0.87498 1.22568 0.92971 0.92541 1.03771 1.22203 0.96080 0.97023 0.91862 1.22492 0.95391 0.95727 0.97732 1.21055 0.99884 0.98272 0.92761 1.17894 0.74062 0.74112 0.87048 1.93241 1.62558 1.66816 1.93268 1.93240 1.92517 1.41001 1.87758 1.93243 1.43068 1.90154 1.88454 1.66708 1.20098 1.22433 1.06699 1.74759 1.10314 1.08344 1.13745 1.85269 1.40875 1.35412 1.35820 0.92498 0.99768 0.96973 0.84046 0.88950 0.86683 0.81067 0.77203 0.79025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.33 13.29 21.45 0.28 -54.05 16 2 C 0.01 0.40 5.46 84.66 0.46 0.87 16 3 Si 0.97 43.68 29.54 68.60 2.03 45.70 16 4 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.54 -29.85 9.32 25.60 0.24 -29.62 16 8 H 0.06 3.35 7.81 -2.91 -0.02 3.33 16 9 C 0.21 10.57 5.44 85.56 0.47 11.04 16 10 N -0.69 -28.05 6.48 -521.98 -3.38 -31.43 16 11 C 0.15 4.88 6.31 85.56 0.54 5.42 16 12 C 0.21 6.79 8.01 88.36 0.71 7.50 16 13 N -0.47 -16.86 11.56 -302.61 -3.50 -20.36 16 14 C 0.20 6.20 7.90 137.33 1.09 7.29 16 15 C 0.18 4.52 6.76 42.00 0.28 4.80 16 16 C -0.10 -1.45 9.73 22.57 0.22 -1.23 16 17 C -0.05 -0.34 10.17 22.44 0.23 -0.11 16 18 C -0.09 -0.97 9.61 22.41 0.22 -0.75 16 19 C 0.02 0.44 6.26 42.60 0.27 0.71 16 20 C 0.52 11.15 3.31 71.24 0.24 11.38 16 21 F -0.18 -5.01 16.85 44.97 0.76 -4.25 16 22 F -0.16 -2.98 17.16 44.97 0.77 -2.20 16 23 F -0.17 -3.34 17.28 44.97 0.78 -2.57 16 24 N -0.45 -12.70 9.66 -172.97 -1.67 -14.38 16 25 N -0.36 -10.47 11.83 -59.22 -0.70 -11.17 16 26 O 0.09 2.57 11.29 74.66 0.84 3.41 16 27 H 0.27 14.69 8.31 -92.70 -0.77 13.92 16 28 H -0.02 -0.79 8.14 -2.39 -0.02 -0.81 16 29 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.34 13.11 8.71 -89.69 -0.78 12.33 16 31 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.12 3.73 8.14 -2.39 -0.02 3.71 16 33 H 0.17 1.95 7.86 -2.91 -0.02 1.93 16 34 H 0.21 -0.62 8.06 -2.91 -0.02 -0.64 16 35 H 0.19 0.48 8.06 -2.91 -0.02 0.46 16 Total: -1.00 -72.13 335.92 1.55 -70.57 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: 0.40 Total: 3.43 kcal Atomic # 6 Polarization: 12.34 SS G_CDS: 4.95 Total: 17.29 kcal Atomic # 7 Polarization: -122.41 SS G_CDS: -8.97 Total: -131.38 kcal Atomic # 8 Polarization: 2.57 SS G_CDS: 0.84 Total: 3.41 kcal Atomic # 9 Polarization: -11.33 SS G_CDS: 2.31 Total: -9.02 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Total: -72.13 1.55 -70.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211454852.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.827 kcal (2) G-P(sol) polarization free energy of solvation -72.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds