Wall clock time and date at job start Tue Mar 31 2020 15:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99810 * 2 1 4 4 H 1.48500 * 109.46787 * 239.99746 * 3 2 1 5 5 H 1.48499 * 109.47210 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46861 * 119.99920 * 3 2 1 7 7 C 1.37876 * 119.99685 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99630 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00203 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47099 * 180.02562 * 9 7 2 11 11 C 1.46900 * 111.00111 * 180.02562 * 10 9 7 12 12 C 1.50701 * 109.47287 * 180.02562 * 11 10 9 13 13 N 1.30972 * 126.44515 * 89.99811 * 12 11 10 14 14 C 1.35197 * 105.57919 * 180.02562 * 13 12 11 15 15 C 1.48484 * 126.40794 * 180.02562 * 14 13 12 16 16 N 1.32644 * 119.71957 * 0.26977 * 15 14 13 17 17 C 1.31687 * 121.62984 * 180.31254 * 16 15 14 18 18 C 1.38362 * 120.88157 * 359.68034 * 17 16 15 19 19 C 1.38680 * 119.35416 * 0.02562 * 18 17 16 20 20 C 1.38513 * 118.49801 * 0.02562 * 19 18 17 21 21 C 1.50703 * 120.46403 * 179.97438 * 20 19 18 22 22 F 1.39905 * 109.47157 * 359.97438 * 21 20 19 23 23 F 1.39900 * 109.47159 * 240.00259 * 21 20 19 24 24 F 1.39897 * 109.47274 * 119.99950 * 21 20 19 25 25 N 1.30718 * 107.18144 * 0.26046 * 14 13 12 26 26 O 1.21288 * 110.10795 * 359.54482 * 25 14 13 27 27 H 0.97010 * 119.99970 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47210 * 59.99994 * 9 7 2 29 29 H 1.09002 * 109.47121 * 300.00134 * 9 7 2 30 30 H 1.00902 * 110.99807 * 303.95050 * 10 9 7 31 31 H 1.09007 * 109.47338 * 59.99791 * 11 10 9 32 32 H 1.09004 * 109.47035 * 299.99986 * 11 10 9 33 33 H 1.07995 * 119.55637 * 179.70195 * 17 16 15 34 34 H 1.08001 * 120.32126 * 180.02562 * 18 17 16 35 35 H 1.08006 * 120.75258 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 7 2.2056 -3.6157 0.0027 11 6 1.5053 -4.9070 0.0032 12 6 2.5148 -6.0259 0.0049 13 7 3.0352 -6.6028 1.0593 14 6 3.8822 -7.5408 0.5792 15 6 4.7182 -8.4678 1.3833 16 7 4.6659 -8.4192 2.7078 17 6 5.3953 -9.2193 3.4575 18 6 6.2438 -10.1506 2.8855 19 6 6.3243 -10.2387 1.5038 20 6 5.5464 -9.3837 0.7407 21 6 5.5995 -9.4409 -0.7643 22 9 6.5033 -10.4322 -1.1617 23 9 6.0172 -8.2026 -1.2636 24 9 4.3280 -9.7408 -1.2649 25 7 3.8313 -7.4755 -0.7254 26 8 3.0478 -6.6160 -1.0696 27 1 -0.4850 0.8401 -0.0004 28 1 0.6240 -2.5574 -0.8880 29 1 0.6247 -2.5562 0.8920 30 1 2.8404 -3.5493 -0.7788 31 1 0.8806 -4.9820 -0.8869 32 1 0.8801 -4.9809 0.8931 33 1 5.3301 -9.1478 4.5331 34 1 6.8376 -10.8026 3.5090 35 1 6.9794 -10.9571 1.0335 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211454990.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:00 Heat of formation + Delta-G solvation = -13.542735 kcal Electronic energy + Delta-G solvation = -27244.679793 eV Core-core repulsion = 22639.602065 eV Total energy + Delta-G solvation = -4605.077728 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.089 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.32561 -47.89683 -47.68469 -45.56445 -40.83320 -36.20302 -35.66784 -33.78484 -33.33941 -32.41204 -31.37475 -27.97695 -26.96918 -25.63892 -25.04566 -23.22761 -23.07738 -21.76117 -21.37405 -18.90665 -18.75947 -18.61931 -18.13105 -17.92636 -16.85633 -16.75277 -16.39731 -15.28829 -15.17697 -14.90840 -14.67494 -14.60490 -14.43554 -14.20570 -14.16235 -13.97851 -13.86708 -13.75472 -13.44425 -13.39947 -12.86257 -12.28038 -12.17461 -11.96989 -11.64419 -11.41202 -11.01141 -10.85656 -10.76035 -10.71868 -10.44103 -10.18049 -10.01031 -9.47779 -9.31865 -8.54909 -7.60263 -6.09583 -4.12027 -0.11808 0.41363 1.24737 2.22007 2.30744 2.75956 2.91822 3.15443 3.32391 3.34651 3.36196 3.39709 3.59121 3.69120 4.18520 4.20462 4.29537 4.40025 4.41124 4.52598 4.72222 4.95060 5.15835 5.18411 5.27343 5.34798 5.49256 5.60235 5.78521 5.87262 5.99917 6.99795 7.21138 7.23051 7.63536 7.98521 8.06169 8.12698 8.39110 8.95159 9.53077 11.01374 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.020283 B = 0.002624 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.129198 B =10667.535598 C =11104.878082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.058 3.942 3 Si 0.902 3.098 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.518 4.518 8 H 0.063 0.937 9 C 0.196 3.804 10 N -0.681 5.681 11 C 0.147 3.853 12 C 0.207 3.793 13 N -0.432 5.432 14 C 0.183 3.817 15 C 0.266 3.734 16 N -0.441 5.441 17 C 0.137 3.863 18 C -0.165 4.165 19 C -0.027 4.027 20 C -0.214 4.214 21 C 0.519 3.481 22 F -0.179 7.179 23 F -0.161 7.161 24 F -0.163 7.163 25 N -0.358 5.358 26 O 0.095 5.905 27 H 0.264 0.736 28 H -0.005 1.005 29 H 0.036 0.964 30 H 0.336 0.664 31 H 0.065 0.935 32 H 0.116 0.884 33 H 0.177 0.823 34 H 0.155 0.845 35 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.577 -24.520 2.788 27.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.729 3.271 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.557 4.557 8 H 0.082 0.918 9 C 0.071 3.929 10 N -0.314 5.314 11 C 0.016 3.984 12 C -0.015 4.015 13 N -0.164 5.164 14 C -0.087 4.087 15 C 0.127 3.873 16 N -0.150 5.150 17 C -0.021 4.021 18 C -0.185 4.185 19 C -0.053 4.053 20 C -0.220 4.220 21 C 0.463 3.537 22 F -0.161 7.161 23 F -0.142 7.142 24 F -0.144 7.144 25 N -0.062 5.062 26 O 0.029 5.971 27 H 0.073 0.927 28 H 0.013 0.987 29 H 0.054 0.946 30 H 0.153 0.847 31 H 0.083 0.917 32 H 0.134 0.866 33 H 0.194 0.806 34 H 0.173 0.827 35 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 11.456 -24.353 3.768 27.176 hybrid contribution 0.602 0.386 -1.497 1.659 sum 12.058 -23.967 2.271 26.925 Atomic orbital electron populations 1.69942 1.06062 1.27143 1.50404 1.24962 0.94906 0.99399 0.95094 0.86501 0.79407 0.82420 0.78743 1.20195 1.21282 1.20088 1.21071 0.93598 0.89909 1.51097 0.91842 1.19643 0.90303 0.86435 0.96557 1.60792 1.21433 0.99598 1.49570 1.20565 0.89370 0.84359 1.04127 1.29281 0.96342 0.96493 0.79349 1.72133 1.09340 1.07005 1.27883 1.23262 0.99668 0.98277 0.87501 1.17512 0.90640 0.89792 0.89334 1.67770 1.20892 1.22720 1.03570 1.23213 0.89142 0.88736 1.01008 1.22386 1.00682 1.00608 0.94825 1.21464 0.94535 0.95198 0.94076 1.20996 1.04596 1.03037 0.93362 1.17791 0.74319 0.74257 0.87305 1.93160 1.68188 1.62497 1.92212 1.93269 1.89798 1.42251 1.88900 1.93248 1.39478 1.92810 1.88904 1.75025 1.09347 1.07903 1.13951 1.85298 1.40204 1.35301 1.36274 0.92690 0.98674 0.94629 0.84703 0.91716 0.86633 0.80599 0.82746 0.82477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.96 13.29 55.43 0.74 -25.22 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.35 29.54 -169.99 -5.02 16.32 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -14.23 9.32 -34.44 -0.32 -14.55 16 8 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 9 C 0.20 4.82 5.44 -4.98 -0.03 4.79 16 10 N -0.68 -13.84 6.48 -116.34 -0.75 -14.59 16 11 C 0.15 2.39 6.31 -4.98 -0.03 2.36 16 12 C 0.21 3.39 8.01 -12.99 -0.10 3.29 16 13 N -0.43 -7.68 11.56 -9.89 -0.11 -7.79 16 14 C 0.18 3.04 7.52 -156.14 -1.17 1.86 16 15 C 0.27 3.74 6.73 -82.93 -0.56 3.18 16 16 N -0.44 -5.71 10.29 -9.76 -0.10 -5.81 16 17 C 0.14 1.09 11.18 -17.57 -0.20 0.89 16 18 C -0.16 -0.93 10.11 -39.37 -0.40 -1.33 16 19 C -0.03 -0.20 9.53 -39.32 -0.37 -0.58 16 20 C -0.21 -2.45 5.41 -104.16 -0.56 -3.01 16 21 C 0.52 6.42 2.78 36.01 0.10 6.52 16 22 F -0.18 -1.87 16.05 2.25 0.04 -1.83 16 23 F -0.16 -2.31 14.96 2.25 0.03 -2.28 16 24 F -0.16 -2.25 15.03 2.25 0.03 -2.21 16 25 N -0.36 -5.87 6.95 30.95 0.22 -5.65 16 26 O 0.10 1.52 11.29 18.02 0.20 1.73 16 27 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 28 H 0.00 -0.11 8.14 -51.93 -0.42 -0.54 16 29 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.34 6.55 8.71 -39.29 -0.34 6.20 16 31 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 32 H 0.12 1.83 8.14 -51.93 -0.42 1.41 16 33 H 0.18 0.78 8.06 -52.49 -0.42 0.35 16 34 H 0.15 0.28 8.06 -52.49 -0.42 -0.15 16 35 H 0.16 0.74 7.26 -52.48 -0.38 0.36 16 LS Contribution 325.34 15.07 4.90 4.90 Total: -1.00 -32.67 325.34 -6.38 -39.05 By element: Atomic # 1 Polarization: 1.24 SS G_CDS: -2.80 Total: -1.56 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: -3.75 Total: 4.96 kcal Atomic # 7 Polarization: -59.05 SS G_CDS: -0.02 Total: -59.07 kcal Atomic # 8 Polarization: 1.52 SS G_CDS: 0.20 Total: 1.73 kcal Atomic # 9 Polarization: -6.43 SS G_CDS: 0.10 Total: -6.33 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.67 -6.38 -39.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211454990.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.503 kcal (2) G-P(sol) polarization free energy of solvation -32.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds